View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5390_low_2 (Length: 654)

Name: NF5390_low_2
Description: NF5390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5390_low_2
NF5390_low_2
[»] chr5 (7 HSPs)
chr5 (18-499)||(37430534-37431015)
chr5 (515-562)||(32872785-32872832)
chr5 (511-563)||(36562936-36562988)
chr5 (513-553)||(16971985-16972025)
chr5 (515-553)||(11954577-11954615)
chr5 (513-562)||(31748473-31748522)
chr5 (519-563)||(32284713-32284757)
[»] chr7 (13 HSPs)
chr7 (512-563)||(29723809-29723860)
chr7 (514-563)||(2008718-2008767)
chr7 (515-563)||(12007073-12007121)
chr7 (515-563)||(15325527-15325575)
chr7 (512-563)||(37352246-37352297)
chr7 (518-563)||(28249460-28249505)
chr7 (515-563)||(33845178-33845226)
chr7 (514-550)||(46881051-46881087)
chr7 (513-563)||(32777592-32777642)
chr7 (518-563)||(21103148-21103193)
chr7 (514-563)||(43807699-43807748)
chr7 (515-563)||(26749140-26749188)
chr7 (515-563)||(27570479-27570527)
[»] chr4 (13 HSPs)
chr4 (515-563)||(39158241-39158289)
chr4 (515-563)||(51255882-51255930)
chr4 (515-563)||(18316073-18316121)
chr4 (515-563)||(38519929-38519977)
chr4 (516-553)||(21014143-21014180)
chr4 (512-553)||(55266171-55266212)
chr4 (515-563)||(29227130-29227178)
chr4 (515-562)||(22813609-22813656)
chr4 (514-563)||(26600085-26600134)
chr4 (515-563)||(5386508-5386556)
chr4 (515-563)||(14443334-14443382)
chr4 (515-563)||(50506524-50506572)
chr4 (519-563)||(54000834-54000878)
[»] chr3 (8 HSPs)
chr3 (515-563)||(29525999-29526047)
chr3 (513-563)||(34307426-34307476)
chr3 (515-563)||(4494124-4494172)
chr3 (518-553)||(27168572-27168607)
chr3 (518-563)||(39713927-39713972)
chr3 (515-563)||(31104800-31104848)
chr3 (515-559)||(32145873-32145917)
chr3 (515-563)||(53681187-53681235)
[»] chr8 (11 HSPs)
chr8 (515-562)||(33451452-33451499)
chr8 (515-563)||(1068742-1068790)
chr8 (514-553)||(42652739-42652778)
chr8 (515-563)||(15716863-15716911)
chr8 (515-563)||(33107754-33107802)
chr8 (515-563)||(34435624-34435672)
chr8 (515-563)||(44091022-44091070)
chr8 (516-547)||(36874001-36874032)
chr8 (513-562)||(11134720-11134769)
chr8 (515-563)||(26027032-26027080)
chr8 (515-563)||(28772013-28772061)
[»] chr2 (10 HSPs)
chr2 (515-553)||(26480977-26481015)
chr2 (302-348)||(41265762-41265808)
chr2 (513-563)||(44239172-44239222)
chr2 (514-563)||(2427885-2427934)
chr2 (510-563)||(11965929-11965982)
chr2 (514-563)||(37731086-37731135)
chr2 (519-563)||(14877125-14877169)
chr2 (515-563)||(31578570-31578618)
chr2 (515-563)||(37316702-37316750)
chr2 (515-563)||(36587358-36587406)
[»] chr1 (9 HSPs)
chr1 (515-553)||(4213218-4213256)
chr1 (519-563)||(7918953-7918997)
chr1 (515-563)||(47642494-47642542)
chr1 (515-563)||(48983555-48983603)
chr1 (512-563)||(38878785-38878836)
chr1 (515-563)||(27742745-27742793)
chr1 (515-563)||(40439727-40439775)
chr1 (515-563)||(42468728-42468776)
chr1 (514-563)||(48858959-48859008)
[»] chr6 (7 HSPs)
chr6 (513-553)||(17182244-17182284)
chr6 (302-353)||(34260975-34261026)
chr6 (515-553)||(1287059-1287097)
chr6 (515-563)||(33712456-33712504)
chr6 (515-562)||(5739651-5739698)
chr6 (513-563)||(8645444-8645494)
chr6 (518-563)||(18064980-18065025)
[»] scaffold0201 (1 HSPs)
scaffold0201 (514-563)||(8608-8657)
[»] scaffold0618 (1 HSPs)
scaffold0618 (515-563)||(8840-8888)
[»] scaffold0184 (1 HSPs)
scaffold0184 (515-563)||(13444-13492)
[»] scaffold0078 (1 HSPs)
scaffold0078 (515-563)||(59352-59400)
[»] scaffold0034 (1 HSPs)
scaffold0034 (517-557)||(101790-101830)


Alignment Details
Target: chr5 (Bit Score: 462; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 18 - 499
Target Start/End: Original strand, 37430534 - 37431015
Alignment:
Q  18 gttatgaagaggtttgaaagatgcagaagcatgacctacaaagcattgattgcaaacatatagtagttgataagaagaatgaataagggaaaagaatatt 117  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||    
T  37430534 gttatgaagaggtttgaaagatgcagaagcatgacctactaagcattgattgcaaccatatagtagttgataagcagaatgaatcagggaaaagaatatt 37430633  T
Q  118 gcatatatgtcttattctctttgtatttgaaattgtggtagtcttgtcttgtgcattggactattagtgttttcctgtcctggtttgacaaatcttttct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37430634 gcatatatgtcttattctctttgtatttgaaattgtggtagtcttgtcttgtgcattggactattagtgttttcctgtcctggtttgacaaatcttttct 37430733  T
Q  218 ggtgttctggtttgacaaatcttaatgctttacctatacagtgtttaattcgttaatagaacaattcctatgatcacaatttccaaattaatcttgtttc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  37430734 ggtgttctggtttgacaaatcttaatgctttacctatacagtgtttaattcgttaatagaataattcctatgatcacaatttccaaattaatcttgtttc 37430833  T
Q  318 gtgtataaattaagacatttacattcacattccatatttgttactgataaatttatgctgcatgctaaattttagaagtatttaatttgaataagcatat 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37430834 gtgtataaattaagacatttacattcacattccatatttgttactgataaatttatgctgcatgctaaattttagaagtatttaatttgaataagcatat 37430933  T
Q  418 gcaaatagtactttgtaaattataaaccaaatgaaataattagtcattcagtttcattgttactaatatcacaatatactgt 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37430934 gcaaatagtactttgtaaattataaaccaaatgaaataattagtcattcagtttcattgttactaatatcacaatatactgt 37431015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 515 - 562
Target Start/End: Original strand, 32872785 - 32872832
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaacttgttggacaa 562  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||    
T  32872785 gagcaatgttatttgaacaaccctttcttgtgacaacttgttggacaa 32872832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 511 - 563
Target Start/End: Original strand, 36562936 - 36562988
Alignment:
Q  511 caatgagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    ||||||| |||||||||||||||||||||| ||| ||||||||||||||||||    
T  36562936 caatgaggaatgttatttgaacaaccctttgttgggacaacttgttggacaac 36562988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 513 - 553
Target Start/End: Original strand, 16971985 - 16972025
Alignment:
Q  513 atgagcaatgttatttgaacaaccctttattgtgacaactt 553  Q
    |||||||||||||||||||||| | ||||||||||||||||    
T  16971985 atgagcaatgttatttgaacaatcatttattgtgacaactt 16972025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 515 - 553
Target Start/End: Complemental strand, 11954615 - 11954577
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaactt 553  Q
    |||||||||||||||||||||| |||||| |||||||||    
T  11954615 gagcaatgttatttgaacaaccatttattttgacaactt 11954577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 513 - 562
Target Start/End: Complemental strand, 31748522 - 31748473
Alignment:
Q  513 atgagcaatgttatttgaacaaccctttattgtgacaacttgttggacaa 562  Q
    |||||| ||||||||||||||| | ||| |||||||||||| ||||||||    
T  31748522 atgagcgatgttatttgaacaatcattttttgtgacaacttattggacaa 31748473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 519 - 563
Target Start/End: Original strand, 32284713 - 32284757
Alignment:
Q  519 aatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    |||||||||| ||||||| ||| ||| ||||||||||||||||||    
T  32284713 aatgttatttaaacaaccttttgttgagacaacttgttggacaac 32284757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 512 - 563
Target Start/End: Original strand, 29723809 - 29723860
Alignment:
Q  512 aatgagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  29723809 aatgagcaatgttatttgtacaaccatttattgtgacaacttgttggacaac 29723860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 514 - 563
Target Start/End: Original strand, 2008718 - 2008767
Alignment:
Q  514 tgagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    ||||||||||||||||||||||| |||  |||||||||||||||||||||    
T  2008718 tgagcaatgttatttgaacaaccattttatgtgacaacttgttggacaac 2008767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 515 - 563
Target Start/End: Original strand, 12007073 - 12007121
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    ||||||||||||||| |||||  ||||||||||||||||||||||||||    
T  12007073 gagcaatgttatttgtacaactatttattgtgacaacttgttggacaac 12007121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 515 - 563
Target Start/End: Original strand, 15325527 - 15325575
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    |||||||||||||||||||||| |||  |||||||||||||||||||||    
T  15325527 gagcaatgttatttgaacaacctttttatgtgacaacttgttggacaac 15325575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 512 - 563
Target Start/End: Complemental strand, 37352297 - 37352246
Alignment:
Q  512 aatgagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    ||||||||||||||||||||||||| ||| ||||  ||||||||||||||||    
T  37352297 aatgagcaatgttatttgaacaaccatttcttgtaccaacttgttggacaac 37352246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 518 - 563
Target Start/End: Original strand, 28249460 - 28249505
Alignment:
Q  518 caatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    ||||||||||||||||||| ||| |||||||||||| |||||||||    
T  28249460 caatgttatttgaacaaccatttcttgtgacaactttttggacaac 28249505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 515 - 563
Target Start/End: Complemental strand, 33845226 - 33845178
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    |||||||||||||||||||||| |||  |||||||| ||||||||||||    
T  33845226 gagcaatgttatttgaacaaccttttcatgtgacaatttgttggacaac 33845178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 514 - 550
Target Start/End: Complemental strand, 46881087 - 46881051
Alignment:
Q  514 tgagcaatgttatttgaacaaccctttattgtgacaa 550  Q
    |||||||||||||||||||||||||||||| ||||||    
T  46881087 tgagcaatgttatttgaacaaccctttattatgacaa 46881051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 513 - 563
Target Start/End: Original strand, 32777592 - 32777642
Alignment:
Q  513 atgagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    |||||||||||||||||||||| | ||| |||| | |||||||||||||||    
T  32777592 atgagcaatgttatttgaacaatcttttcttgtaataacttgttggacaac 32777642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 518 - 563
Target Start/End: Complemental strand, 21103193 - 21103148
Alignment:
Q  518 caatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    ||||| ||||||||||||| ||| |||||| |||||||||||||||    
T  21103193 caatgatatttgaacaaccatttcttgtgataacttgttggacaac 21103148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 563
Target Start/End: Original strand, 43807699 - 43807748
Alignment:
Q  514 tgagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    |||||| |||||||||||||||||||| || |||||| |||||| |||||    
T  43807699 tgagcagtgttatttgaacaaccctttcttatgacaatttgttgtacaac 43807748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 515 - 563
Target Start/End: Complemental strand, 26749188 - 26749140
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    |||||||||||||||||||||| ||| |||||||||  | |||||||||    
T  26749188 gagcaatgttatttgaacaaccattttttgtgacaatcttttggacaac 26749140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 515 - 563
Target Start/End: Complemental strand, 27570527 - 27570479
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    |||||||||||| || |||||  |||||||||||||||| |||||||||    
T  27570527 gagcaatgttatctgtacaactatttattgtgacaacttattggacaac 27570479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 515 - 563
Target Start/End: Complemental strand, 39158289 - 39158241
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||    
T  39158289 gagcaatgttatttgaacaaccatttattgtgacaacttattggacaac 39158241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 515 - 563
Target Start/End: Complemental strand, 51255930 - 51255882
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  51255930 gagcaatgttatttgtacaaccatttattgtgacaacttgttggacaac 51255882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 515 - 563
Target Start/End: Complemental strand, 18316121 - 18316073
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    |||||||||||||||||||||| ||| || |||||||||||||||||||    
T  18316121 gagcaatgttatttgaacaaccatttcttatgacaacttgttggacaac 18316073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 515 - 563
Target Start/End: Complemental strand, 38519977 - 38519929
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    ||||||||||||||| | |||| ||||||||||||||||||||||||||    
T  38519977 gagcaatgttatttgtataaccatttattgtgacaacttgttggacaac 38519929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 516 - 553
Target Start/End: Complemental strand, 21014180 - 21014143
Alignment:
Q  516 agcaatgttatttgaacaaccctttattgtgacaactt 553  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  21014180 agcaatgttatttgaacaaccttttattgtgacaactt 21014143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 512 - 553
Target Start/End: Complemental strand, 55266212 - 55266171
Alignment:
Q  512 aatgagcaatgttatttgaacaaccctttattgtgacaactt 553  Q
    ||||||||||||||||||||||| |||||||||||| |||||    
T  55266212 aatgagcaatgttatttgaacaatcctttattgtgataactt 55266171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 515 - 563
Target Start/End: Original strand, 29227130 - 29227178
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    |||||||||||||||||||||| |||  |||||||| ||||||||||||    
T  29227130 gagcaatgttatttgaacaacctttttatgtgacaatttgttggacaac 29227178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 515 - 562
Target Start/End: Original strand, 22813609 - 22813656
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaacttgttggacaa 562  Q
    |||||||||||||| ||||||  ||| |||||||||||||||||||||    
T  22813609 gagcaatgttatttaaacaactttttcttgtgacaacttgttggacaa 22813656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 563
Target Start/End: Original strand, 26600085 - 26600134
Alignment:
Q  514 tgagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    ||||||||||||||||||||||  |||  |||||||| ||||||||||||    
T  26600085 tgagcaatgttatttgaacaacatttttatgtgacaatttgttggacaac 26600134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 515 - 563
Target Start/End: Complemental strand, 5386556 - 5386508
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    |||||||| ||||||||||||| ||| |||||||||||| || ||||||    
T  5386556 gagcaatgatatttgaacaaccatttcttgtgacaactttttagacaac 5386508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 515 - 563
Target Start/End: Complemental strand, 14443382 - 14443334
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    |||||||| ||||||||||||| ||| |||||||||| | |||||||||    
T  14443382 gagcaatgatatttgaacaaccattttttgtgacaaccttttggacaac 14443334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 515 - 563
Target Start/End: Complemental strand, 50506572 - 50506524
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    |||||||||||||||||||||  ||| |||||||||| | |||||||||    
T  50506572 gagcaatgttatttgaacaactatttcttgtgacaaccttttggacaac 50506524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 519 - 563
Target Start/End: Complemental strand, 54000878 - 54000834
Alignment:
Q  519 aatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    |||||||||||||||||  |||||||||||||| | |||||||||    
T  54000878 aatgttatttgaacaactatttattgtgacaaccttttggacaac 54000834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 515 - 563
Target Start/End: Complemental strand, 29526047 - 29525999
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  29526047 gagcaatgttatttgtacaaccatttattgtgacaacttgttggacaac 29525999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 513 - 563
Target Start/End: Original strand, 34307426 - 34307476
Alignment:
Q  513 atgagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    |||||||||||||||||||||| ||||| |||||||||||| |||||||||    
T  34307426 atgagcaatgttatttgaacaatcctttcttgtgacaacttattggacaac 34307476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 515 - 563
Target Start/End: Original strand, 4494124 - 4494172
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    |||||||||||||||||||||| ||| || |||||||||||||||||||    
T  4494124 gagcaatgttatttgaacaaccatttcttatgacaacttgttggacaac 4494172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 518 - 553
Target Start/End: Original strand, 27168572 - 27168607
Alignment:
Q  518 caatgttatttgaacaaccctttattgtgacaactt 553  Q
    |||||||||||||||||||||||||| |||||||||    
T  27168572 caatgttatttgaacaaccctttattatgacaactt 27168607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 518 - 563
Target Start/End: Original strand, 39713927 - 39713972
Alignment:
Q  518 caatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    ||||||||||||||||||| ||| |||||| || ||||||||||||    
T  39713927 caatgttatttgaacaaccattttttgtgataatttgttggacaac 39713972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 515 - 563
Target Start/End: Complemental strand, 31104848 - 31104800
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    |||||||||||||||||||||  ||| ||||||||| ||||| ||||||    
T  31104848 gagcaatgttatttgaacaactttttcttgtgacaatttgtttgacaac 31104800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 515 - 559
Target Start/End: Original strand, 32145873 - 32145917
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaacttgttgga 559  Q
    |||||||||||||||||||||| ||||  | ||||||||||||||    
T  32145873 gagcaatgttatttgaacaaccatttacggggacaacttgttgga 32145917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 515 - 563
Target Start/End: Complemental strand, 53681235 - 53681187
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    |||||||||||| ||||||||| ||| |||||||||| | |||||||||    
T  53681235 gagcaatgttatatgaacaaccattttttgtgacaaccttttggacaac 53681187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 515 - 562
Target Start/End: Original strand, 33451452 - 33451499
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaacttgttggacaa 562  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||    
T  33451452 gagcaatgttatttgaacaaccctttcttgtgacaacttgttagacaa 33451499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 515 - 563
Target Start/End: Complemental strand, 1068790 - 1068742
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    |||||||||||||||||||||| |||  |||||||||||||||||||||    
T  1068790 gagcaatgttatttgaacaacctttttatgtgacaacttgttggacaac 1068742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 514 - 553
Target Start/End: Complemental strand, 42652778 - 42652739
Alignment:
Q  514 tgagcaatgttatttgaacaaccctttattgtgacaactt 553  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  42652778 tgagcaatgttatttgaacaactctttattgtgacaactt 42652739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 515 - 563
Target Start/End: Original strand, 15716863 - 15716911
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    |||||||||||||||||||||  |||  |||||||||||||||||||||    
T  15716863 gagcaatgttatttgaacaacttttttatgtgacaacttgttggacaac 15716911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 515 - 563
Target Start/End: Original strand, 33107754 - 33107802
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    |||||||||||||||||||||| |||  |||||||| ||||||||||||    
T  33107754 gagcaatgttatttgaacaacctttttatgtgacaatttgttggacaac 33107802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 515 - 563
Target Start/End: Original strand, 34435624 - 34435672
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    |||||||||||||||||||||| |||  ||||||||||||||| |||||    
T  34435624 gagcaatgttatttgaacaacctttttatgtgacaacttgttgcacaac 34435672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 515 - 563
Target Start/End: Complemental strand, 44091070 - 44091022
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    |||||||||||||||||||||| |||  ||||||||||| |||||||||    
T  44091070 gagcaatgttatttgaacaaccttttcatgtgacaactttttggacaac 44091022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 516 - 547
Target Start/End: Original strand, 36874001 - 36874032
Alignment:
Q  516 agcaatgttatttgaacaaccctttattgtga 547  Q
    ||||||||||||||||||||||||||||||||    
T  36874001 agcaatgttatttgaacaaccctttattgtga 36874032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 513 - 562
Target Start/End: Complemental strand, 11134769 - 11134720
Alignment:
Q  513 atgagcaatgttatttgaacaaccctttattgtgacaacttgttggacaa 562  Q
    ||||||||||||||||||||||   ||| |||||| ||||||||||||||    
T  11134769 atgagcaatgttatttgaacaaatatttcttgtgataacttgttggacaa 11134720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 515 - 563
Target Start/End: Complemental strand, 26027080 - 26027032
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    ||||||||||||||||||| |  ||| ||||||||||||||||| ||||    
T  26027080 gagcaatgttatttgaacagctatttcttgtgacaacttgttggccaac 26027032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 515 - 563
Target Start/End: Original strand, 28772013 - 28772061
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    |||||||| ||||||||||||| ||| |||||||||| | |||||||||    
T  28772013 gagcaatgatatttgaacaaccatttcttgtgacaaccttttggacaac 28772061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 515 - 553
Target Start/End: Original strand, 26480977 - 26481015
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaactt 553  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26480977 gagcaatgttatttgaacaaccctttattgtgacaactt 26481015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 302 - 348
Target Start/End: Complemental strand, 41265808 - 41265762
Alignment:
Q  302 aaattaatcttgtttcgtgtataaattaagacatttacattcacatt 348  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||    
T  41265808 aaattaatcttgttccgtgtataaattaagacatatacattcacatt 41265762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 513 - 563
Target Start/End: Complemental strand, 44239222 - 44239172
Alignment:
Q  513 atgagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    |||||||||||||||||||||||| ||||||||||||| || |||||||||    
T  44239222 atgagcaatgttatttgaacaaccatttattgtgacaattttttggacaac 44239172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 514 - 563
Target Start/End: Original strand, 2427885 - 2427934
Alignment:
Q  514 tgagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    ||||||||||||||||||||||| ||| ||||||||| ||||||||||||    
T  2427885 tgagcaatgttatttgaacaaccattttttgtgacaatttgttggacaac 2427934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 510 - 563
Target Start/End: Complemental strand, 11965982 - 11965929
Alignment:
Q  510 ccaatgagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    |||| |||||||||||||||||||||| |||  |||||||||||||||||||||    
T  11965982 ccaaagagcaatgttatttgaacaacctttttatgtgacaacttgttggacaac 11965929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 514 - 563
Target Start/End: Original strand, 37731086 - 37731135
Alignment:
Q  514 tgagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    ||||||||||||||||||||||| |||  ||||||||||||||| |||||    
T  37731086 tgagcaatgttatttgaacaacctttttatgtgacaacttgttgcacaac 37731135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 519 - 563
Target Start/End: Complemental strand, 14877169 - 14877125
Alignment:
Q  519 aatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    |||||||||||||||||| ||| ||||||||||||||| ||||||    
T  14877169 aatgttatttgaacaaccatttcttgtgacaacttgttagacaac 14877125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 515 - 563
Target Start/End: Complemental strand, 31578618 - 31578570
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    |||||||| ||||||||||| | ||| ||||||||||||||||||||||    
T  31578618 gagcaatgatatttgaacaatcatttcttgtgacaacttgttggacaac 31578570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 515 - 563
Target Start/End: Original strand, 37316702 - 37316750
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    |||||||||||||||||||||| |||  | |||||||||||||||||||    
T  37316702 gagcaatgttatttgaacaacctttttctatgacaacttgttggacaac 37316750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 515 - 563
Target Start/End: Original strand, 36587358 - 36587406
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    |||||||||||||||||||||| ||| || ||||||| | |||||||||    
T  36587358 gagcaatgttatttgaacaaccatttcttctgacaaccttttggacaac 36587406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 515 - 553
Target Start/End: Complemental strand, 4213256 - 4213218
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaactt 553  Q
    |||||||||||||||||||||||||||||||||||||||    
T  4213256 gagcaatgttatttgaacaaccctttattgtgacaactt 4213218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 519 - 563
Target Start/End: Original strand, 7918953 - 7918997
Alignment:
Q  519 aatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||    
T  7918953 aatgttatttgaacaaccctttcttgtgacaacttgttagacaac 7918997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 515 - 563
Target Start/End: Original strand, 47642494 - 47642542
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    |||||||||||||||||||||| ||| ||| ||||||||||||||||||    
T  47642494 gagcaatgttatttgaacaaccattttttgggacaacttgttggacaac 47642542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 515 - 563
Target Start/End: Original strand, 48983555 - 48983603
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    ||||||||||||| | |||||| ||||||||||||||||||||||||||    
T  48983555 gagcaatgttattggtacaaccatttattgtgacaacttgttggacaac 48983603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 512 - 563
Target Start/End: Original strand, 38878785 - 38878836
Alignment:
Q  512 aatgagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    ||||||||||||||||||||||||  |||  |||||||||||||||||||||    
T  38878785 aatgagcaatgttatttgaacaacatttttatgtgacaacttgttggacaac 38878836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 515 - 563
Target Start/End: Complemental strand, 27742793 - 27742745
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    |||||||||||||||||||||| |||  ||| |||||||||||||||||    
T  27742793 gagcaatgttatttgaacaacctttttatgtaacaacttgttggacaac 27742745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 515 - 563
Target Start/End: Original strand, 40439727 - 40439775
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    |||||||||||||||||||||| |||  |||||||| ||||||||||||    
T  40439727 gagcaatgttatttgaacaacctttttatgtgacaatttgttggacaac 40439775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 515 - 563
Target Start/End: Complemental strand, 42468776 - 42468728
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    |||||||| ||||||||||||| ||| ||||||||| ||||||||||||    
T  42468776 gagcaatgatatttgaacaaccatttcttgtgacaatttgttggacaac 42468728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 563
Target Start/End: Complemental strand, 48859008 - 48858959
Alignment:
Q  514 tgagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    ||||||||||||| ||||||||| ||| |||||||||| | |||||||||    
T  48859008 tgagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaac 48858959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 513 - 553
Target Start/End: Complemental strand, 17182284 - 17182244
Alignment:
Q  513 atgagcaatgttatttgaacaaccctttattgtgacaactt 553  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  17182284 atgagcaatgttatttgaacaaccctttattatgacaactt 17182244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 302 - 353
Target Start/End: Complemental strand, 34261026 - 34260975
Alignment:
Q  302 aaattaatcttgtttcgtgtataaattaagacatttacattcacattccata 353  Q
    |||||||||||||  ||||||||||||||||||| |||||||||||| ||||    
T  34261026 aaattaatcttgtcccgtgtataaattaagacatatacattcacatttcata 34260975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 515 - 553
Target Start/End: Complemental strand, 1287097 - 1287059
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaactt 553  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  1287097 gagcaatgttatttgaacaatcctttattgtgacaactt 1287059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 515 - 563
Target Start/End: Complemental strand, 33712504 - 33712456
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    |||||||||||||||||||||| |||  ||| |||||||||||||||||    
T  33712504 gagcaatgttatttgaacaacctttttatgtaacaacttgttggacaac 33712456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 515 - 562
Target Start/End: Original strand, 5739651 - 5739698
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaacttgttggacaa 562  Q
    ||||||||||||||||||| || ||| || ||||||||||||||||||    
T  5739651 gagcaatgttatttgaacatccatttcttatgacaacttgttggacaa 5739698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 513 - 563
Target Start/End: Complemental strand, 8645494 - 8645444
Alignment:
Q  513 atgagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    |||||||||| ||||||||||||| ||| |||||||||| | |||||||||    
T  8645494 atgagcaatgatatttgaacaaccatttcttgtgacaaccttttggacaac 8645444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 518 - 563
Target Start/End: Original strand, 18064980 - 18065025
Alignment:
Q  518 caatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    ||||||||||||||||||  |||  |||||||||||||||||||||    
T  18064980 caatgttatttgaacaacttttttatgtgacaacttgttggacaac 18065025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 514 - 563
Target Start/End: Complemental strand, 8657 - 8608
Alignment:
Q  514 tgagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    ||||||||||||||||||||||  ||| ||||||||||||||| ||||||    
T  8657 tgagcaatgttatttgaacaactatttcttgtgacaacttgttagacaac 8608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 515 - 563
Target Start/End: Original strand, 8840 - 8888
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    |||||||||||||||||||||| |||  ||||||||||| |||||||||    
T  8840 gagcaatgttatttgaacaaccttttcatgtgacaactttttggacaac 8888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 515 - 563
Target Start/End: Original strand, 13444 - 13492
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    |||||||||||||| |||||| |||| |||||||||||| |||||||||    
T  13444 gagcaatgttatttaaacaactcttttttgtgacaacttattggacaac 13492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 515 - 563
Target Start/End: Complemental strand, 59400 - 59352
Alignment:
Q  515 gagcaatgttatttgaacaaccctttattgtgacaacttgttggacaac 563  Q
    |||||||||||||| |||||| |||| |||||||||||| |||||||||    
T  59400 gagcaatgttatttaaacaactcttttttgtgacaacttattggacaac 59352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 517 - 557
Target Start/End: Original strand, 101790 - 101830
Alignment:
Q  517 gcaatgttatttgaacaaccctttattgtgacaacttgttg 557  Q
    ||||||||||||| |||||||||| ||||||||||||||||    
T  101790 gcaatgttatttgcacaaccctttcttgtgacaacttgttg 101830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University