View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5390_low_3 (Length: 471)

Name: NF5390_low_3
Description: NF5390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5390_low_3
NF5390_low_3
[»] chr5 (2 HSPs)
chr5 (1-455)||(13334139-13334605)
chr5 (55-85)||(22775116-22775146)
[»] chr4 (2 HSPs)
chr4 (34-102)||(30868256-30868324)
chr4 (58-99)||(41728950-41728991)
[»] scaffold0154 (1 HSPs)
scaffold0154 (59-102)||(36419-36462)
[»] chr2 (2 HSPs)
chr2 (66-97)||(25323373-25323404)
chr2 (62-102)||(25083293-25083333)
[»] chr6 (1 HSPs)
chr6 (69-102)||(17506464-17506497)
[»] chr3 (2 HSPs)
chr3 (58-102)||(21869611-21869655)
chr3 (55-95)||(54455272-54455312)


Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Complemental strand, 13334605 - 13334139
Alignment:
Q  1 tgcacatgttaagg-atttcgcagatagcaaatgtattgtacaagattaactattaactttttgataaataaattgacacaatttcaaatacataatttc 99  Q
    |||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13334605 tgcacatgttaagggatttcacagataacaaatgtattgtacaagattaactattaactttttgataaataaattgacacaatttcaaatacataatttc 13334506  T
Q  100 tataatttttatacgtattgcacaacaattttccggtaacttctttgtcaagctagtttcaacccatgaaaattaacttctttgggattaattatatttt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13334505 tataatttttatacgtattgcacaacaattttccggtaacttctttgtcaagctagtttcaacccatgaaaattaacttctttgggattaattatatttt 13334406  T
Q  200 cattttcttatccttatccgttttatgatgctcagcatcttattagcaagtgcataaacatgctgaaattaaaaatt-aactttatttatctagtgaagt 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  13334405 cattttcttatccttatccgttttatgatgctcagcatcttattagcaagtgcataaacatgctgaaattaaaaattaaactttatttatctagtgaagt 13334306  T
Q  299 acaatttgtttaataatcataacatattcatatcatccattaagttc----------aggaaacataaacattacaacaatagaaacataaaagaactta 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||| ||| |||||||||||||||||||||    
T  13334305 acaatttgtttaataatcataacatattcatatcatccattaagttcatccttattaaggaaacataaacattataactatagaaacataaaagaactta 13334206  T
Q  389 gcaatagtaatatcctttgaacacacactttattttcttcttccatatgtgatgctctctacaaatt 455  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13334205 gcaatagtaatatcctttgaacacacactttattttcttcttccatatgtgatgctctctacaaatt 13334139  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 85
Target Start/End: Complemental strand, 22775146 - 22775116
Alignment:
Q  55 aactttttgataaataaattgacacaatttc 85  Q
    |||||||||||||||||||||||||||||||    
T  22775146 aactttttgataaataaattgacacaatttc 22775116  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 30868256 - 30868324
Alignment:
Q  34 tattgtacaagattaactattaactttttgataaataaattgacacaatttcaaatacataatttctat 102  Q
    ||||||| || ||||| | |||||||||||| |||||||||||||||||||| ||||  ||||||||||    
T  30868256 tattgtagaaaattaatttttaactttttgaaaaataaattgacacaatttccaatatgtaatttctat 30868324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 41728950 - 41728991
Alignment:
Q  58 tttttgataaataaattgacacaatttcaaatacataatttc 99  Q
    ||||||| |||||||||||||||||||| |||| ||||||||    
T  41728950 tttttgagaaataaattgacacaatttccaatagataatttc 41728991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 36419 - 36462
Alignment:
Q  59 ttttgataaataaattgacacaatttcaaatacataatttctat 102  Q
    |||||| ||||||||| |||||||||| ||||||||||||||||    
T  36419 ttttgagaaataaattaacacaatttccaatacataatttctat 36462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 97
Target Start/End: Original strand, 25323373 - 25323404
Alignment:
Q  66 aaataaattgacacaatttcaaatacataatt 97  Q
    ||||||||||||||||||||||||||||||||    
T  25323373 aaataaattgacacaatttcaaatacataatt 25323404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 25083293 - 25083333
Alignment:
Q  62 tgataaataaattgacacaatttcaaatacataatttctat 102  Q
    |||||||||||||  ||||||||| ||||||||||||||||    
T  25083293 tgataaataaattatcacaatttctaatacataatttctat 25083333  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 102
Target Start/End: Complemental strand, 17506497 - 17506464
Alignment:
Q  69 taaattgacacaatttcaaatacataatttctat 102  Q
    |||||| |||||||||||||||||||||||||||    
T  17506497 taaattaacacaatttcaaatacataatttctat 17506464  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 21869611 - 21869655
Alignment:
Q  58 tttttgataaataaattgacacaatttcaaatacataatttctat 102  Q
    ||||||| |||||||| | |||||||||||||||| |||||||||    
T  21869611 tttttgagaaataaatagccacaatttcaaatacaaaatttctat 21869655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 54455272 - 54455312
Alignment:
Q  55 aactttttgataaataaattgacacaatttcaaatacataa 95  Q
    |||||||| |||| |||||||||||||||| ||||||||||    
T  54455272 aactttttaataagtaaattgacacaattttaaatacataa 54455312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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