View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5390_low_4 (Length: 441)
Name: NF5390_low_4
Description: NF5390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5390_low_4 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 427; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 7 - 441
Target Start/End: Original strand, 44566201 - 44566635
Alignment:
| Q |
7 |
gcagcacagatattagtgtttattgttttttgtcttgtaagtttgttgaattcagattcctactttgtctatggtattaatcgttgcagtgtgctgatat |
106 |
Q |
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| T |
44566201 |
gcagtacagatattagtgtttattgttttttgtcttgtaagtttgttgaattcagattcctactttgtctatggtattaatcgttgcagtgtgctgatat |
44566300 |
T |
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| Q |
107 |
attttattatatattgcttttggcagtatcttcgtaagatatctgtttttggacatcacatatttcagatatatgcagtaagtctaatgccacattattc |
206 |
Q |
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| T |
44566301 |
attttattatatattgctttttgcagtatcttcgtaagatatctgtttttggacatcacatatttcagatatatgcagtaagtctaatgccacattattc |
44566400 |
T |
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| Q |
207 |
ttctgagttgctcttcagaagagaaaataaatttctgtggtgtaaaaaatgatttttgttaagtgatattattttctttacctaatttacaggtgccttt |
306 |
Q |
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| T |
44566401 |
ttctgagttgctcttcagaagagaaaataaatttctgtggtgtaaaaaatgatttttgttaagtgatattattttctttacctaatttacaggtgccttt |
44566500 |
T |
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| Q |
307 |
gggtttggcagtcacatggacatttgcttttttgctgactgaaaacggccggatgaaacattgtcaagttaatacttctgatacaatgacatcaccccca |
406 |
Q |
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| T |
44566501 |
gggtttggcagtcacatggacatttgcttttttgctgactgaaaacggccggatgaaacattgtcaagttaatacttctgatacaatgacatcaccccca |
44566600 |
T |
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| Q |
407 |
tggtttagatttccctatccactgcaatggggtac |
441 |
Q |
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| T |
44566601 |
tggtttagatttccctatccactgcaatggggtac |
44566635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 118 - 349
Target Start/End: Complemental strand, 36032874 - 36032639
Alignment:
| Q |
118 |
tattgcttttggcagtatcttcgtaagatatctgtttttggacatcacatatttcagatatatgcagtaagtctaatgccacattattcttctgagttgc |
217 |
Q |
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| T |
36032874 |
tattgctttctgcagtatcttcgtaagatatctgttcttggacaccgcatatttctaatatatgcagtaagtgcaatgccataatatccttccgagttac |
36032775 |
T |
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| Q |
218 |
tcttcagaagagaaaataaatttctgtggtgtaaaaaatgatttttgttaagtgatat----tattttctttacctaatttacaggtgcctttgggtttg |
313 |
Q |
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| T |
36032774 |
tctatagcagtgaaaataaatttctgctgtgtaacaaatgatttctgttaagtgatgttatatattttttttacctaatttgcaggttcctttgggtttg |
36032675 |
T |
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| Q |
314 |
gcagtcacatggacatttgcttttttgctgactgaa |
349 |
Q |
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| T |
36032674 |
gcaattacatgggcagttgctttcttgctgactgaa |
36032639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 357 - 441
Target Start/End: Complemental strand, 36032553 - 36032469
Alignment:
| Q |
357 |
ggatgaaacattgtcaagttaatacttctgatacaatgacatcacccccatggtttagatttccctatccactgcaatggggtac |
441 |
Q |
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| T |
36032553 |
ggatgaaatattgtcgagttgatacttcgcatgcaatcaaatcatccccatggtttaaatttccctatccattgcaatggggtac |
36032469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 36032968 - 36032901
Alignment:
| Q |
16 |
atattagtgtttattgttttttgtcttgtaagtttgttgaattcagattcctactttgtctatggtattaatc |
88 |
Q |
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| T |
36032968 |
atattagtggttattgttttttcccttgtaagt-----gaattcagactcccactttgtctatggtattgatc |
36032901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 130 - 189
Target Start/End: Original strand, 20122158 - 20122217
Alignment:
| Q |
130 |
cagtatcttcgtaagatatctgtttttggacatcacatatttcagatatatgcagtaagt |
189 |
Q |
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| T |
20122158 |
cagtatcttcgtaagatatctgttcttggacatcgcatatttctaatctacgcagtaagt |
20122217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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