View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5390_low_5 (Length: 425)
Name: NF5390_low_5
Description: NF5390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5390_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 7 - 410
Target Start/End: Complemental strand, 11294690 - 11294289
Alignment:
| Q |
7 |
aagaaaataatagtgtgagtaaccaaaaactctatcttgggatcaagtgatttcnnnnnnnnnnnnnataaaagtaaaaatcttggcattaagttactga |
106 |
Q |
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| T |
11294690 |
aagaaaataataatgtaagtaaccaaaaactctatcttgggatcaagtgatttcttttttcttttttttaaaagtaaaaatcttggcattaagttactga |
11294591 |
T |
|
| Q |
107 |
aagtgtcgtcactaaaggatttaagttgtttctttatctcgagttgtgtaaatcaactaattttgagctaatgagaaaacattaacctaagttggtatac |
206 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11294590 |
aagtgtcgtcactaaaggatttaagtcgtttctttatctcgagttgtgtaaatcaactaattttgagctaatgagaaaacattaacctaagttggtatac |
11294491 |
T |
|
| Q |
207 |
taatatttgtctatataaaattatatcttgcgtatgaaaaattgtttacaaaatattcaatgttatgctttgattttatagtattttttacttcgagaaa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
11294490 |
taatatttgtctatataaaattatatcttgcgtatgaaaaatcgtttacaaaatattcaatgttatgttttgattttatagtattttttacttctagaaa |
11294391 |
T |
|
| Q |
307 |
aatatagagtatcaaacacgcagtatgataatttaaaactaataattaatgacgatattttgaagttcaatggtctcctttgataaacgacataatgttt |
406 |
Q |
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| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
11294390 |
a--atagagtatcaaacatgcagtatgataacttaaaactaataattaatgacgatattttgaagttcaatggtctcctttgatcaacgacaaaatgttt |
11294293 |
T |
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| Q |
407 |
aaat |
410 |
Q |
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|||| |
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| T |
11294292 |
aaat |
11294289 |
T |
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