View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5390_low_9 (Length: 323)
Name: NF5390_low_9
Description: NF5390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5390_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 15 - 310
Target Start/End: Original strand, 40056307 - 40056602
Alignment:
| Q |
15 |
accttgttccagctcccctaactgagcacaagcagataaaaccgacaccaatgctatattatccggaacaaattccaatccaatcatctcattaaaaagt |
114 |
Q |
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| T |
40056307 |
accttgttccagctcccctaactgagcacaagcagataaaaccgacaccaatgctatattatccggaataaattccaatccaatcatctcattaaaaagt |
40056406 |
T |
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| Q |
115 |
tcaacagcttcacgacacagtttcgcctgactataacccgcaatcatagtaccccaggtaacttcattccgttgaggcatttcatcaaacagttcacgcg |
214 |
Q |
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| T |
40056407 |
tcaacagcttcccgacacagtttcgcctgactataacccgcaatcatagtaccccaggtaacttcattccgttgaggcatttcatcaaacagttcacgcg |
40056506 |
T |
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| Q |
215 |
caagatcaagcttaaaacttttaacaaacccatcaatcataacattataagaaacaatgtctctataaccactttcacaaaacaccttgtatgcat |
310 |
Q |
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|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40056507 |
cacgatcaagcttaaaatttttaacaaacccatcaatcataacattataagaaacaatgtctctataaccactttcacaaaacaccttgtatgcat |
40056602 |
T |
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