View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5392-Insertion-1 (Length: 265)
Name: NF5392-Insertion-1
Description: NF5392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5392-Insertion-1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 7 - 265
Target Start/End: Original strand, 45989855 - 45990114
Alignment:
| Q |
7 |
accaatatccacaccta-gatgacaacacggaccaaaagttaaacagttaaagaaatgtccattatcaaaaacaggttgtacacagtgaatcgtcttctt |
105 |
Q |
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| T |
45989855 |
accaatatccacacctatgatgacaacacggaccaaaagttaaacagttaaagaaatgtccattatcaaaaacaggttgtacacagtgaatcgtcttctt |
45989954 |
T |
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| Q |
106 |
cataaagtatatctttgctttataccagaagcataaaactgtatccttaaaagccaataaaggtcattataactcttcatcatttagcaacttcaatgta |
205 |
Q |
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|||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45989955 |
cataaagtatatctttactttataccataagcataaaactgtatccttaaaagccaataaaggtcattataactcttcatcatttagcaacttcaatgta |
45990054 |
T |
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| Q |
206 |
ggcaaaactttaacgataaatgacgtgaagctctcatcagcaactgcatttcctgctatg |
265 |
Q |
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||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||| |
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| T |
45990055 |
ggcaaaactttaacgataaatgatgcgaagttctcatcagcaactgcatttcctgctatg |
45990114 |
T |
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