View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5392_low_1 (Length: 607)
Name: NF5392_low_1
Description: NF5392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5392_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 1 - 511
Target Start/End: Complemental strand, 33342172 - 33341662
Alignment:
| Q |
1 |
aaatcaaaagcaaaagacaaacacataccatgcaagagtgcagataagcttcccattggcatataatcatacacaacaagcttctcatctttactaaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33342172 |
aaatcaaaagcaaaagacaaacacataccatgcaagagtgcagataagcttcccattggcatataatcatacacaacaagcttctcatctttactaaaat |
33342073 |
T |
|
| Q |
101 |
aataacccctaagtgggaccaatttctcatgaaccaatttcccaacctcctcaattttctccctgaattctctttcacttgctgtaacatccttcaacct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33342072 |
aataacccctaagtgggaccaatttctcatgaaccaatttcccaacctcctcaattttctccctgaattctctttcacttgctgtaacatccttcaatct |
33341973 |
T |
|
| Q |
201 |
ctttacagccacactaattcccatttccaatgttgccttataagttgttccaaatgtccctttccccaaaacttcagctgaagcttttaacaaatcatcc |
300 |
Q |
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|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33341972 |
ctttacagccacactaattcccatctccaatgttgccttataagttgttccaaatgtccctttccccaaaacttcagctgaagcttttaacaaatcatcc |
33341873 |
T |
|
| Q |
301 |
aaactaaacttcctactcacattcccaataaatatcaaactcttctctaatgacacgccagaagctgaaaccgaagctgaagccatcgttgaagtcgatg |
400 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33341872 |
aaactaaactttctactcacattcccaataaatatcaaactcttctctaatgacacgccagaagctgaaaccgaagctgaagccatcgttgaagtcgatg |
33341773 |
T |
|
| Q |
401 |
ctatacctgaataactcccaccagcaccaccaccactctcaaaatctctagttttctcacgtgacacctcaccttcaacactcttagcacgtgctacatt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33341772 |
ctatacctgaataactcccaccagcaccaccaccactctcaaaatctctagttttctcacgtgacacctcaccttcaacactcttagcacgtgctacatt |
33341673 |
T |
|
| Q |
501 |
atcagaatcac |
511 |
Q |
| |
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||||||||||| |
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| T |
33341672 |
atcagaatcac |
33341662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 27 - 162
Target Start/End: Original strand, 25390519 - 25390654
Alignment:
| Q |
27 |
accatgcaagagtgcagataagcttcccattggcatataatcatacacaacaagcttctcatctttactaaaataataacccctaagtgggaccaatttc |
126 |
Q |
| |
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||||||||| ||||||||||| |||||||| ||| |||||||| |||| ||||||||||||| ||||| |||||||| ||||||| || |||| ||| |
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| T |
25390519 |
accatgcaaaagtgcagataaacttcccatatgcaaataatcatgaacaagaagcttctcatctctactataataataagccctaagaggtgccaaattc |
25390618 |
T |
|
| Q |
127 |
tcatgaaccaatttcccaacctcctcaattttctcc |
162 |
Q |
| |
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|||||||||| | | ||||| | |||||| |||||| |
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| T |
25390619 |
tcatgaaccattgttccaactttctcaatcttctcc |
25390654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 234 - 303
Target Start/End: Original strand, 25390729 - 25390798
Alignment:
| Q |
234 |
tgccttataagttgttccaaatgtccctttccccaaaacttcagctgaagcttttaacaaatcatccaaa |
303 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||| || || ||||| ||||| |||||||||| |||||| |
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| T |
25390729 |
tgccttataagatgtcccaaatgtccctttccctaatacctcagcagaagcccttaacaaatcctccaaa |
25390798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 45443136 - 45443198
Alignment:
| Q |
27 |
accatgcaagagtgcagataagcttcccattggcatataatcatacacaacaagcttctcatc |
89 |
Q |
| |
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||||||||| |||||||| | ||||||||||| ||| |||||||| |||| ||||||||||| |
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| T |
45443136 |
accatgcaaaagtgcagagaggcttcccattgacatgtaatcataaacaaggagcttctcatc |
45443198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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