View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5392_low_2 (Length: 343)
Name: NF5392_low_2
Description: NF5392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5392_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 14 - 329
Target Start/End: Complemental strand, 35865705 - 35865390
Alignment:
| Q |
14 |
catcaaggttttcattttttaatttgctaaacatttcatgctggcattttatctaagcattcctatgctgactcttaaaattttcagctgatccggacaa |
113 |
Q |
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| T |
35865705 |
catcaaggttttcattttttgatttgctaaacatttcatgttggcattttatctaagcattcctatgttgactcttaaaattttcagctgatccggacaa |
35865606 |
T |
|
| Q |
114 |
tattaccttacctgaacgtttccaagctgatgcagttccacacaatcaatatgagaggttttggctttcaccatccttcttttgataatcatgttcttct |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35865605 |
tattaccttacctgaacgtttccaagctgatgcagttccacacaatcaatatgagaggttttggctttcaccatccttcttttgataatcatgttcttct |
35865506 |
T |
|
| Q |
214 |
ttctagcagtatttcttttagacattttaattttaagctttatgctatgaatatcagaattgagatgcagttgtaaattttccatgtgtcctgttagcag |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35865505 |
ttctagcagtatttcttttagacattttaattttaagctttatgctatgaatatcagaattgagatgcagttgtaaattttccatgtgtcctgttagcag |
35865406 |
T |
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| Q |
314 |
gatcaatgaaccatct |
329 |
Q |
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|||||||||||||||| |
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| T |
35865405 |
gatcaatgaaccatct |
35865390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 14 - 330
Target Start/End: Complemental strand, 34815481 - 34815158
Alignment:
| Q |
14 |
catcaaggttttcattttttaatttgctaaacattt-catgctggcattttatctaagcattcctatgctgactcttaaa-attttcagctgatccggac |
111 |
Q |
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||||||||||||||| ||| |||||||||||||||| |||| | ||||| | ||| | ||||||||||||||||| || ||| ||||||| ||| || |
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| T |
34815481 |
catcaaggttttcatctttgaatttgctaaacatttacatgtttgcattatgtctgattgttcctatgctgactctttaacattgtcagctgctcccgag |
34815382 |
T |
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| Q |
112 |
aatattaccttacctgaacgtttccaagctgatgcagttccacacaatcaatatgagaggttttggctttcaccatccttcttttgataatcatgttctt |
211 |
Q |
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||||||||| || ||||| ||||||||||||||| ||||| |||||| | ||||||||||| |||| |||||||||| | | ||||| ||||||| |
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| T |
34815381 |
aatattaccctatttgaacctttccaagctgatgcggttccttacaatcggtttgagaggtttttgcttccaccatccttttgt--ataattgtgttctt |
34815284 |
T |
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| Q |
212 |
ctttctagcagtatttct------tttagacattttaattttaagctttatgctatgaatatcagaattgagatgcagttgtaaat-tttccatgtgtcc |
304 |
Q |
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|||||||| || |||| | |||||||||||||||||||| |||||||||| | |||||||| || |||||||||||||||| ||| |||||| || |
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| T |
34815283 |
ctttctagtagaatttttacttcatttagacattttaattttaaactttatgctaagtatatcagattttagatgcagttgtaaatattttcatgtgccc |
34815184 |
T |
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| Q |
305 |
tgttagcaggatcaatgaaccatctg |
330 |
Q |
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|| |||||||| |||||||||||||| |
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| T |
34815183 |
tgctagcaggaccaatgaaccatctg |
34815158 |
T |
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