View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5392_low_3 (Length: 290)
Name: NF5392_low_3
Description: NF5392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5392_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 15 - 271
Target Start/End: Original strand, 51742752 - 51743008
Alignment:
| Q |
15 |
gagaggatgaagatatgagacgaaggagacgcgatctgttacgtcatcgaattagggatttggcgacccgaacccgaagcatgcagaatcggatcttgga |
114 |
Q |
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| T |
51742752 |
gagaggatgaagatatgagacgaaggagacgcgatctgttacgtcatcgaattagggatttggcgacccgaacccgaagcatgcagaatcggatcttgga |
51742851 |
T |
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| Q |
115 |
ttgggctgaaattttgatgggacttgaagataattcgattgagtttcgtcttcaggcaccagaattggaccggtacgttggtaatccggaggattatgtt |
214 |
Q |
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| T |
51742852 |
ttgggctgaaattttgatgggacttgaagataattcgattgagtttcgtcttcaggcaccagaattggaccggtacgttggtaatccggaggattatgtt |
51742951 |
T |
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| Q |
215 |
gatgcggcggagtatgaggcgttgctgcagacgttggcggagaatgatggaaatggg |
271 |
Q |
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| T |
51742952 |
gatgcggcggagtatgaggcgttgctgcagacgttggcggagaatgatggaaatggg |
51743008 |
T |
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