View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5392_low_5 (Length: 269)
Name: NF5392_low_5
Description: NF5392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5392_low_5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 22 - 269
Target Start/End: Original strand, 51742346 - 51742593
Alignment:
| Q |
22 |
gaaaccctacctccatactggtgctaccactgcgacaaacgcgtctccattgaaaccgtcgcgaatctccccgacctcatctgcggcgattgcaaaaacg |
121 |
Q |
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| T |
51742346 |
gaaaccctacctccatactggtgctaccactgcgacaaacgcgtctccgttgaaaccgtcgcgaatctccccgacctcatctgcggcgattgcaaaaacg |
51742445 |
T |
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| Q |
122 |
gcttcgttgaatcaatccccacaccttctcgctctcgttcaccttcttcctcctccgatgatcccaatttcggttcacagtttcttcaggttcttcgcct |
221 |
Q |
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| T |
51742446 |
gcttcgttgaatcaatccccacaccttctcgctctcgttcaccttcttcctcctccgatgatcccaatttcggttcacagtttcttcaggttcttcgcct |
51742545 |
T |
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| Q |
222 |
aatcgctcaatcgtcgcgtgacgacgacgcgtctccaccccctccacc |
269 |
Q |
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| T |
51742546 |
aatcgctcaatcgtcgcgtgacgacgacgcgtctccaccacctccacc |
51742593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 22 - 211
Target Start/End: Complemental strand, 1864292 - 1864103
Alignment:
| Q |
22 |
gaaaccctacctccatactggtgctaccactgcgacaaacgcgtctccattgaaaccgtcgcgaatctccccgacctcatctgcggcgattgcaaaaacg |
121 |
Q |
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||||||||||||||||| ||||||||||| ||||| |||| |||| | | ||||| || ||||||||||||||||||||||| ||||||||||||||| |
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| T |
1864292 |
gaaaccctacctccatattggtgctaccattgcgaaaaacaggtcttcgtcaaaaccatcacgaatctccccgacctcatctgcagcgattgcaaaaacg |
1864193 |
T |
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| Q |
122 |
gcttcgttgaatcaatccccacaccttctcgctctcgttcaccttcttcctcctccgatgatcccaatttcggttcacagtttcttcagg |
211 |
Q |
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| T |
1864192 |
gcttcgttgaatcaatccccacaccttctcactcccgctccccttcttcctcttccgatgatttcaattttggttcacagtttcttcagg |
1864103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 22 - 137
Target Start/End: Complemental strand, 30438613 - 30438498
Alignment:
| Q |
22 |
gaaaccctacctccatactggtgctaccactgcgacaaacgcgtctccattgaaaccgtcgcgaatctccccgacctcatctgcggcgattgcaaaaacg |
121 |
Q |
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|||||||||||||||||||||||||||||||| || |||||||||| | | ||||| || |||||||||||||||||||| |||||||| ||||||||| |
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| T |
30438613 |
gaaaccctacctccatactggtgctaccactgtgaaaaacgcgtcttcgtaaaaaccatcacgaatctccccgacctcatcagcggcgatcgcaaaaacg |
30438514 |
T |
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| Q |
122 |
gcttcgttgaatcaat |
137 |
Q |
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||||||| |||||||| |
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| T |
30438513 |
gcttcgtcgaatcaat |
30438498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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