View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5393-Insertion-2 (Length: 1063)
Name: NF5393-Insertion-2
Description: NF5393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5393-Insertion-2 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 545; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 8 - 693
Target Start/End: Complemental strand, 31328429 - 31327739
Alignment:
| Q |
8 |
tatagaagtaactcaactggttcggcgnnnnnnntgagttcaaacaagcaaacatcatcagcaacaacaaaatcatcatcatggtctaacataaatttgt |
107 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31328429 |
tatagaagtaactcaactggttcggcgaaaaaaatgagttcaaacaagcaaacatcatcagcaacaacaaaatcatcatcatggtctaacataaatttgt |
31328330 |
T |
|
| Q |
108 |
atcctatgcaaaaatctaattcaggtaagagttatggaggatcttatggaaatggtcattggattagtcctgttctaaatgtaccaactccttgtgtttc |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31328329 |
atcctatgcaaaaatctaattcaggtaagagttatggaggatcttatggaaatggtcattggattagtcctgttctaaatgtaccaactccttgtgtttc |
31328230 |
T |
|
| Q |
208 |
aaagggaagtgcaaatttctttaggtttggttcgtttttaagtattggaaaggttaagaagaataagaagtgattttgttcatatgtatcacaatcatat |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31328229 |
aaagggaagtgcaaatttctttaggtttggttcgtttttaagtattggaaaggttaagaagaataagaagtgattttgttcatatgtatcacaatcatat |
31328130 |
T |
|
| Q |
308 |
cataacatattataatgtaatagtttcatctttcttgttatcatatttannnnnnngttctgaacaatgaagttaattagattggtttgttatgattatt |
407 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
31328129 |
cataacatattataatgtaatagtttcatctttcttgttatcatatttatttttttgttctgaacaatgaagttaattagattggtttgttttgattatt |
31328030 |
T |
|
| Q |
408 |
tcatgtattcatcttggcttgttattttgtcatagaggtttggttagcatagtaataggctcggtttggataaacaatttaactaagtgttaatagcata |
507 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31328029 |
tcatgtattcatcttggcttgttattatgtcatagagg-ttagttagcatagtaataggctcagtttggataaacaatttaactaagtgttaatagcata |
31327931 |
T |
|
| Q |
508 |
atctctgttacaccaacacttctgattgaatgtgtgtttcagtgtccgacgctgac-----acgacacttgtgattgcattaaattacgtcannnnnnna |
602 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||| || | | |
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| T |
31327930 |
atctctgttacaccaacacttctgattgaatgtgtgttccactgtccgacgctgacacgatacgacacttgtgattgcattaaattatgtaattttctta |
31327831 |
T |
|
| Q |
603 |
aaa-ttttatcggtgttgacgtgtcagtattgtgtctgatgtccatgtttgtcctacatagagcataattgcttaccatataagtatttatg |
693 |
Q |
| |
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||| |||||| | ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31327830 |
aaatttttattgatgttgacgtgtcagtattgtgtctgatgtccgtgtttgtcctgcatagagcataattgcttaccatataagtatttatg |
31327739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 759 - 1055
Target Start/End: Complemental strand, 31327673 - 31327364
Alignment:
| Q |
759 |
gttatttccagaagctatcttggagaacttatgaaagcaaactaaag-cgagttatggatat--gtcataagctttttccataaactttcacaaatagtt |
855 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
31327673 |
gttatttccaaaagctatcttggagaacttatgaaagcaaactaaaatcaagttatggatattggtcataagctttttccataaactttcacaaatagtt |
31327574 |
T |
|
| Q |
856 |
tc-caagtgtttaggctagtaa-taagcttacataagtcaattcaa-tagattattggt-gatgaagttaatta-gcagctatattaataaa-tgattaa |
949 |
Q |
| |
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|| ||||||||||||||||||| |||||||| |||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||| ||||||| |
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|
| T |
31327573 |
tcacaagtgtttaggctagtaaataagcttaaataagtcaattcaaatagattattggttgatgaagttaattaagcagctatattaataaaatgattaa |
31327474 |
T |
|
| Q |
950 |
aaagaaatggattatagagcttctgaatgccatggtctta-gagacatcaaaatggaaatgcatgttt-atg-tttgt-ctattttgcattatatttggg |
1045 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||| ||||| ||||||||||||||||||||| |
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| T |
31327473 |
aaagaaatggtttatagagcttctgaatgccatggtcttaggagacatcaaaatggaaatccatgtttaatgttttgtcctattttgcattatatttggg |
31327374 |
T |
|
| Q |
1046 |
attcctcata |
1055 |
Q |
| |
|
|||||||||| |
|
|
| T |
31327373 |
attcctcata |
31327364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 510 - 565
Target Start/End: Complemental strand, 13484127 - 13484072
Alignment:
| Q |
510 |
ctctgttacaccaacacttctgattgaatgtgtgtttcagtgtccgacgctgacac |
565 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||| ||||||||||| ||||||| |
|
|
| T |
13484127 |
ctctgttgcaccaacacttctgattgaatgcatgttccagtgtccgacactgacac |
13484072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 471 - 513
Target Start/End: Complemental strand, 17125818 - 17125776
Alignment:
| Q |
471 |
gtttggataaacaatttaactaagtgttaatagcataatctct |
513 |
Q |
| |
|
||||||||||||||||| | |||||| |||||||||||||||| |
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|
| T |
17125818 |
gtttggataaacaattttattaagtgctaatagcataatctct |
17125776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 272
Target Start/End: Complemental strand, 43918240 - 43918139
Alignment:
| Q |
171 |
ttagtcctgttctaaatgtaccaactccttgtgtttcaaagggaagtgcaaatttctttaggtttggttcgtttttaagtattggaaaggttaagaagaa |
270 |
Q |
| |
|
||||||||||| | |||||||||||||||||| |||| || |||||| || ||| ||| |||| ||||| ||||| || |||| |||| ||||||||| |
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| T |
43918240 |
ttagtcctgttttgaatgtaccaactccttgtttttcgaaaggaagtttaagtttatttgggttcggttcatttttgcgtgttgggaaggctaagaagaa |
43918141 |
T |
|
| Q |
271 |
ta |
272 |
Q |
| |
|
|| |
|
|
| T |
43918140 |
ta |
43918139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 549 - 626
Target Start/End: Original strand, 26915230 - 26915307
Alignment:
| Q |
549 |
gtgtccgacgctgacacgacacttgtgattgcattaaattacgtcannnnnnnaaaattttatcggtgttgacgtgtc |
626 |
Q |
| |
|
||||||||| | |||||||||||||||||| |||||||||| |||| ||||||||||| |||| |||||||| |
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|
| T |
26915230 |
gtgtccgacaccgacacgacacttgtgattacattaaattatgtcattttctcaaaattttatccgtgtcgacgtgtc |
26915307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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