View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5393-Insertion-3 (Length: 778)

Name: NF5393-Insertion-3
Description: NF5393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5393-Insertion-3
NF5393-Insertion-3
[»] chr1 (6 HSPs)
chr1 (148-763)||(26531416-26532035)
chr1 (554-660)||(43387052-43387158)
chr1 (8-45)||(26532095-26532132)
chr1 (560-629)||(17002177-17002246)
chr1 (8-45)||(26528905-26528942)
chr1 (560-629)||(34161005-34161074)
[»] chr8 (13 HSPs)
chr8 (480-705)||(10279009-10279234)
chr8 (603-752)||(19263219-19263368)
chr8 (513-655)||(42797243-42797385)
chr8 (553-660)||(10901395-10901502)
chr8 (556-655)||(23141753-23141852)
chr8 (554-655)||(13756564-13756665)
chr8 (560-629)||(16248550-16248619)
chr8 (560-629)||(34802287-34802356)
chr8 (604-700)||(36990356-36990451)
chr8 (607-670)||(15276763-15276826)
chr8 (607-670)||(15457132-15457195)
chr8 (551-624)||(10280401-10280474)
chr8 (560-629)||(16311763-16311832)
[»] scaffold0284 (2 HSPs)
scaffold0284 (479-714)||(70-303)
scaffold0284 (479-714)||(8885-9118)
[»] chr3 (11 HSPs)
chr3 (515-629)||(32970442-32970556)
chr3 (603-752)||(50425-50574)
chr3 (513-655)||(50331916-50332058)
chr3 (515-591)||(10022506-10022582)
chr3 (539-714)||(25225223-25225401)
chr3 (601-700)||(10020181-10020280)
chr3 (73-131)||(34024754-34024812)
chr3 (560-629)||(19816367-19816436)
chr3 (209-277)||(34024877-34024945)
chr3 (477-588)||(50244310-50244419)
chr3 (482-613)||(34849817-34849942)
[»] scaffold1743 (1 HSPs)
scaffold1743 (603-752)||(103-252)
[»] chr6 (6 HSPs)
chr6 (513-650)||(1599669-1599806)
chr6 (554-660)||(31737168-31737274)
chr6 (584-705)||(18089900-18090021)
chr6 (560-615)||(9450708-9450763)
chr6 (480-579)||(20874145-20874246)
chr6 (644-705)||(27100245-27100306)
[»] chr2 (8 HSPs)
chr2 (539-660)||(3395405-3395526)
chr2 (598-761)||(14908811-14908974)
chr2 (554-673)||(39403378-39403495)
chr2 (554-629)||(36727617-36727692)
chr2 (554-681)||(24967973-24968099)
chr2 (539-660)||(5788826-5788945)
chr2 (555-629)||(29975905-29975979)
chr2 (577-655)||(41754118-41754196)
[»] chr5 (5 HSPs)
chr5 (554-694)||(38015851-38015991)
chr5 (602-705)||(24539656-24539759)
chr5 (480-674)||(19318849-19319039)
chr5 (479-612)||(9025673-9025805)
chr5 (539-705)||(42953857-42954024)
[»] chr7 (3 HSPs)
chr7 (553-639)||(4704111-4704197)
chr7 (548-675)||(4714226-4714353)
chr7 (607-660)||(6189866-6189919)
[»] chr4 (8 HSPs)
chr4 (603-696)||(22681136-22681229)
chr4 (554-629)||(13228720-13228795)
chr4 (554-708)||(14285289-14285443)
chr4 (560-656)||(3773720-3773816)
chr4 (553-629)||(14265631-14265707)
chr4 (553-706)||(6555328-6555481)
chr4 (539-660)||(13910150-13910271)
chr4 (636-697)||(28474807-28474868)
[»] scaffold0211 (1 HSPs)
scaffold0211 (479-719)||(16277-16516)
[»] scaffold1315 (1 HSPs)
scaffold1315 (601-697)||(1327-1423)
[»] scaffold1293 (1 HSPs)
scaffold1293 (601-697)||(648-744)
[»] scaffold0024 (2 HSPs)
scaffold0024 (554-697)||(47075-47218)
scaffold0024 (620-706)||(46248-46334)
[»] scaffold1737 (1 HSPs)
scaffold1737 (480-579)||(476-577)
[»] scaffold0159 (1 HSPs)
scaffold0159 (539-660)||(33199-33318)


Alignment Details
Target: chr1 (Bit Score: 457; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 148 - 763
Target Start/End: Complemental strand, 26532035 - 26531416
Alignment:
Q  148 aatgaatcgatcaacactagtgttagctcccccataaggtccaaagatggtatgatggtatcatagcctgattcgactttatggagaagcataagtggtt 247  Q
    |||| ||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  26532035 aatggatcgatcaacactagtgttagcttccccataaggtccaaatatagtatgatggtatcatagcctaattcgactttatggagaagcataggtggtt 26531936  T
Q  248 tctggtgatatatcctggatgcgaagggtcacatacttgagtgagagagttgttaatttgtcaaatgtgagtttgaagttctacatttgatgtaagagta 347  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||  |||||||||||    
T  26531935 tctggtgatatatcctggatgcgaagggtcacatacttgagtgagaga--tgttaatttgtcaaatgtgagtt-gaagttctacattgaatgtaagagta 26531839  T
Q  348 ----ttgataaacatgtaagtgagagatgttatgttgtctattctcatgaaagaaatgtatgtaaacctttctccatgaaatcaccatcatcccaccnnn 443  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||       
T  26531838 aatattgataaacatgtaagtgagagatgttatgttgtctattctcatgaaagaaatgtatgtaaacatttctccatgaaatcaccatcatcccaccttt 26531739  T
Q  444 nnnnnnnnnnnn-----accatattgtgtctctaatggattttatttggctatgtcaccatattacatatatggagagagtctcacgtttaagagagaag 538  Q
                     |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26531738 tttttttttttttttttaccatattgtgtctctaatggactttatttggccatgtcaccatattacatatatggagagagtctcacgtttaagagagaag 26531639  T
Q  539 tgttaatatgttagatgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaagg 638  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  26531638 tgttaatatgttagatgtgagttaaagtttcacattagatgcaatagtagatg--cagaaaaatataagtgagatgactcatatatctaatatattaagg 26531541  T
Q  639 ttgtgggtgaagatgtggtgtcgatatcacttttgtggtttctcttggcctaatgtgattatccaacttaatttagtctcctccaaaagctacaacatta 738  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26531540 ttatgggtgaagatgtggtgtcgatatcacttttgtggtttctcttggcctaatttgattatccaacttaatttagtctcctccaaaagctacaacatta 26531441  T
Q  739 tgatgaattgttttattatatatgg 763  Q
    |||||||||||||| ||||||||||    
T  26531440 tgatgaattgttttcttatatatgg 26531416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 554 - 660
Target Start/End: Complemental strand, 43387158 - 43387052
Alignment:
Q  554 tgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatg 653  Q
    ||||||||||| || ||||||  |||||||||||||||   ||||| |||||||||| ||||||| |||||||||| | ||||| || ||||||||| ||    
T  43387158 tgtgagttaaaattacacattgaatgcaatagtagatgttgagaaacatataagtgaaatgactcgtatatctaatgtcttaagattttgggtgaagttg 43387059  T
Q  654 tggtgtc 660  Q
    || ||||    
T  43387058 tgatgtc 43387052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 26532132 - 26532095
Alignment:
Q  8 tattattcaatttaacattactatttaataccatttca 45  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26532132 tattattcaatttaacattactatttaataccatttca 26532095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 560 - 629
Target Start/End: Complemental strand, 17002246 - 17002177
Alignment:
Q  560 ttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaat 629  Q
    |||||| |||||||| |||  || |||||||||  |||||||||||||||| ||||| |||||| |||||    
T  17002246 ttaaagcttcacattggataaaaaagtagatgatgagaaaaatataagtgaaatgacccatatacctaat 17002177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 26528942 - 26528905
Alignment:
Q  8 tattattcaatttaacattactatttaataccatttca 45  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  26528942 tattattcaatttaacattactatataacaccatttca 26528905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 560 - 629
Target Start/End: Original strand, 34161005 - 34161074
Alignment:
Q  560 ttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaat 629  Q
    ||||||||||||||| |||  ||  ||||||||  |||||||||||||||| ||||| |||||| |||||    
T  34161005 ttaaagtttcacattggataaaaaggtagatgatgagaaaaatataagtgaaatgacccatatacctaat 34161074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 480 - 705
Target Start/End: Original strand, 10279009 - 10279234
Alignment:
Q  480 ttatttggctatgtcaccatattacatatatggagagagtctcacgtttaagagagaagtgttaatatgttagatgtgagttaaagtttcacattagatg 579  Q
    ||||||| | ||||||||| ||||||||| ||  |||||||||||  |||||||| |  ||||||||| | | ||||||||| ||||||||||||  ||     
T  10279009 ttatttgacaatgtcaccaaattacatatgtgcggagagtctcacacttaagagatagatgttaatatatcatatgtgagttgaagtttcacattcaatt 10279108  T
Q  580 caatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtggtgtcgatatcacttttgtggttt 679  Q
    ||| ||||||||   |||||| ||||||||||||||  |||||| ||||| |  ||||||| ||||| ||||||||   || || ||||||||||||||     
T  10279109 caagagtagatggtgagaaaattataagtgagatgatccatatacctaatgttgtaaggttttgggttaagatgtgacatcaatctcacttttgtggttg 10279208  T
Q  680 ctcttggcctaatgtgattatccaac 705  Q
     || | || |||||||||||||||||    
T  10279209 ttcatagcttaatgtgattatccaac 10279234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 603 - 752
Target Start/End: Complemental strand, 19263368 - 19263219
Alignment:
Q  603 ataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtggtgtcgatatcacttttgtggtttctcttggcctaatgtgattatcc 702  Q
    |||||||| |||||||||||| ||||| | ||||||||  || || |||||||||||| || ||||||||||||| ||| || | |||||||||| |||     
T  19263368 ataagtgatatgactcatatacctaatgtcttaaggtttaggatggagatgtggtgtcaatctcacttttgtggtatctgttagtctaatgtgatgatca 19263269  T
Q  703 aacttaatttagtctcctccaaaagctacaacattatgatgaattgtttt 752  Q
    || | ||| |||  |||  || |||  |||||||||||||||| ||||||    
T  19263268 aattcaatgtagaatccaacagaagtcacaacattatgatgaactgtttt 19263219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 513 - 655
Target Start/End: Complemental strand, 42797385 - 42797243
Alignment:
Q  513 agagagtctcacgtttaagagagaagtgttaatatgttagatgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgaga 612  Q
    ||||||||||| | |||| ||| |  ||||||| ||| |  ||||||||||| |  ||||||  ||||||||||| |||   ||||| ||||||||||||    
T  42797385 agagagtctcatgcttaatagaaagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtatatgttgagaaacatataagtgaga 42797286  T
Q  613 tgactcatatatctaatatattaaggttgtgggtgaagatgtg 655  Q
    |||||||| |||||||| | ||||| || ||||||||| ||||    
T  42797285 tgactcatgtatctaatgtcttaagattttgggtgaagttgtg 42797243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 553 - 660
Target Start/End: Complemental strand, 10901502 - 10901395
Alignment:
Q  553 atgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaaggttgtgggtgaagat 652  Q
    |||||||||||| |  ||||||  |||||||||||||||   || || ||| |||||||||||||| |||||||||| | ||||| || ||||||||| |    
T  10901502 atgtgagttaaaataacacattgaatgcaatagtagatgttgagtaacatacaagtgagatgactcgtatatctaatgtgttaagattttgggtgaagtt 10901403  T
Q  653 gtggtgtc 660  Q
    ||| ||||    
T  10901402 gtgatgtc 10901395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 556 - 655
Target Start/End: Complemental strand, 23141852 - 23141753
Alignment:
Q  556 tgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtg 655  Q
    ||||||||| |  ||||||  |||||||||||||||   ||||| |||||| ||||||||||||| |||||||| | ||||| || ||||||||| ||||    
T  23141852 tgagttaaaataacacattgaatgcaatagtagatgttgagaaacatataaatgagatgactcatgtatctaatgtcttaagattttgggtgaagttgtg 23141753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 554 - 655
Target Start/End: Original strand, 13756564 - 13756665
Alignment:
Q  554 tgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatg 653  Q
    ||||||||||| |  ||||||  |||||||||||||||   ||||| || ||||||| ||||||||| |||||||| | ||||| || ||||||||| ||    
T  13756564 tgtgagttaaaataacacattgaatgcaatagtagatgttgagaaacatttaagtgaaatgactcatgtatctaatgtcttaagattttgggtgaagttg 13756663  T
Q  654 tg 655  Q
    ||    
T  13756664 tg 13756665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 560 - 629
Target Start/End: Complemental strand, 16248619 - 16248550
Alignment:
Q  560 ttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaat 629  Q
    |||||| ||||||||||||  || |||||||||  |||||||||||||||| ||||| |||||| |||||    
T  16248619 ttaaagcttcacattagataaaaaagtagatgatgagaaaaatataagtgaaatgacccatatacctaat 16248550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 560 - 629
Target Start/End: Original strand, 34802287 - 34802356
Alignment:
Q  560 ttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaat 629  Q
    |||||| ||||||||||||  || |||||||||  |||||||||||||||| ||||| |||||| |||||    
T  34802287 ttaaagcttcacattagataaaaaagtagatgatgagaaaaatataagtgaaatgacccatatacctaat 34802356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 604 - 700
Target Start/End: Original strand, 36990356 - 36990451
Alignment:
Q  604 taagtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtggtgtcgatatcacttttgtggtttctcttggcctaatgtgattat 700  Q
    |||||||||||||  |||||| |||| | |||||||| || ||||| |||||||||| |||||| |||  ||||||||||| | | |||||||||||    
T  36990356 taagtgagatgaccaatatatgtaatgtcttaaggttttgagtgaatatgtggtgtcaatatca-tttgttggtttctcttagtcaaatgtgattat 36990451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 607 - 670
Target Start/End: Complemental strand, 15276826 - 15276763
Alignment:
Q  607 gtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtggtgtcgatatcactt 670  Q
    ||||||||||| |||||  |||| |||||||||| | ||||||||||||||||| || ||||||    
T  15276826 gtgagatgactaatatacataatgtattaaggttttaggtgaagatgtggtgtcaatctcactt 15276763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 607 - 670
Target Start/End: Complemental strand, 15457195 - 15457132
Alignment:
Q  607 gtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtggtgtcgatatcactt 670  Q
    ||||||||||| |||||  |||| |||||||||| | ||||||||||||||||| || ||||||    
T  15457195 gtgagatgactaatatacataatgtattaaggttttaggtgaagatgtggtgtcaatctcactt 15457132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 551 - 624
Target Start/End: Original strand, 10280401 - 10280474
Alignment:
Q  551 agatgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatat 624  Q
    |||| |||||| ||||||||||||| ||||||  ||||||    ||||| |||||||||| |||||||||||||    
T  10280401 agatatgagttgaagtttcacattacatgcaagggtagattgtgagaaacatataagtgaaatgactcatatat 10280474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 560 - 629
Target Start/End: Complemental strand, 16311832 - 16311763
Alignment:
Q  560 ttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaat 629  Q
    |||||| |||||||| |||  || |||||||||  |||||||||||||||| ||||| |||||| |||||    
T  16311832 ttaaagcttcacattggataaaaaagtagatgatgagaaaaatataagtgaaatgacccatatacctaat 16311763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 479 - 714
Target Start/End: Complemental strand, 303 - 70
Alignment:
Q  479 tttatttggctatgtcaccatattacatatatggagagagtctcacgtttaagagagaagtgttaatatgttagatgtgagttaaagtttcacattagat 578  Q
    ||||||||| |||||||||| |||||| || |  ||| |||||||| |||| ||||||   |||||| |||   |||||||||||||||||| ||| |||    
T  303 tttatttggttatgtcaccaaattacagatgt--agaaagtctcacatttaggagagagaagttaatttgtcgtatgtgagttaaagtttcatattggat 206  T
Q  579 gcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtggtgtcgatatcacttttgtggtt 678  Q
    |||| ||||| ||  || |||||||||||||||||||| |||||| |||||   ||||  || ||| ||| ||||||||||  || |||||||| ||| |    
T  205 gcaagagtaggtggtcaaaaaaatataagtgagatgacacatataactaatgccttaaatttttggatgatgatgtggtgttaatttcacttttatgggt 106  T
Q  679 tctcttggcctaatgtgattatccaacttaatttag 714  Q
     || ||  || ||||| ||||||||||||| |||||    
T  105 gcttttacccaaatgtaattatccaacttagtttag 70  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 479 - 714
Target Start/End: Complemental strand, 9118 - 8885
Alignment:
Q  479 tttatttggctatgtcaccatattacatatatggagagagtctcacgtttaagagagaagtgttaatatgttagatgtgagttaaagtttcacattagat 578  Q
    ||||||||| |||||||||| |||||| || |  ||| |||||||| |||| ||||||   |||||| |||   |||||||||||||||||| ||| |||    
T  9118 tttatttggttatgtcaccaaattacagatgt--agaaagtctcacatttaggagagagaagttaatttgtcgtatgtgagttaaagtttcatattggat 9021  T
Q  579 gcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtggtgtcgatatcacttttgtggtt 678  Q
    |||| ||||| ||  || |||||||||||||||||||| |||||| |||||   ||||  || ||| ||| ||||||||||  || |||||||| ||| |    
T  9020 gcaagagtaggtggtcaaaaaaatataagtgagatgacacatataactaatgccttaaatttttggatgatgatgtggtgttaatttcacttttatgggt 8921  T
Q  679 tctcttggcctaatgtgattatccaacttaatttag 714  Q
     || ||  || ||||| ||||||||||||| |||||    
T  8920 gcttttacccaaatgtaattatccaacttagtttag 8885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 8e-20; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 515 - 629
Target Start/End: Complemental strand, 32970556 - 32970442
Alignment:
Q  515 agagtctcacgtttaagagagaagtgttaatatgttagatgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatg 614  Q
    |||||||||| ||| || ||||  ||||||||||| | |||||||| ||||||||||||||||||||| ||||||||   | ||| ||||||||||||||    
T  32970556 agagtctcacatttcagggagatatgttaatatgtcaaatgtgagtgaaagtttcacattagatgcaagagtagatgctgaaaaatatataagtgagatg 32970457  T
Q  615 actcatatatctaat 629  Q
    || |||||| |||||    
T  32970456 acccatatacctaat 32970442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 603 - 752
Target Start/End: Original strand, 50425 - 50574
Alignment:
Q  603 ataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtggtgtcgatatcacttttgtggtttctcttggcctaatgtgattatcc 702  Q
    |||||||| |||||||||||| ||||| | ||||||||  || || |||||||||||| || ||||||||||||| ||| || | |||||||||| |||     
T  50425 ataagtgatatgactcatatacctaatgtcttaaggtttgggatggagatgtggtgtcaatctcacttttgtggtatctgttagtctaatgtgatgatca 50524  T
Q  703 aacttaatttagtctcctccaaaagctacaacattatgatgaattgtttt 752  Q
    || | ||| |||  ||| ||| |||  |||||||||||||||| ||||||    
T  50525 aattcaatgtagaatccaccagaagtcacaacattatgatgaactgtttt 50574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 513 - 655
Target Start/End: Complemental strand, 50332058 - 50331916
Alignment:
Q  513 agagagtctcacgtttaagagagaagtgttaatatgttagatgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgaga 612  Q
    ||||||| ||| | |||| |||||  ||||||| ||| |  ||||||||||| |  ||||||  |||||||||||||||   ||||| ||||||||||||    
T  50332058 agagagtttcatgcttaatagagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagaaacatataagtgaga 50331959  T
Q  613 tgactcatatatctaatatattaaggttgtgggtgaagatgtg 655  Q
    |||||||| |||||||| | ||||| || ||||||||| ||||    
T  50331958 tgactcatgtatctaatgtcttaagattttgggtgaagttgtg 50331916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 515 - 591
Target Start/End: Original strand, 10022506 - 10022582
Alignment:
Q  515 agagtctcacgtttaagagagaagtgttaatatgttagatgtgagttaaagtttcacattagatgcaatagtagatg 591  Q
    |||||||||| ||| || ||||  ||||||||||| | |||||| | ||||||||||||||||||||| ||||||||    
T  10022506 agagtctcacatttcagggagatatgttaatatgtcaaatgtgactgaaagtttcacattagatgcaagagtagatg 10022582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 539 - 714
Target Start/End: Complemental strand, 25225401 - 25225223
Alignment:
Q  539 tgttaatatgttagatgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaat---atatta 635  Q
    ||||||||||| |  |||||||||||||| ||||||  |||||||||||||||   | ||| ||| ||||| |||||| |||||| |||||    || ||    
T  25225401 tgttaatatgtcatttgtgagttaaagttccacattgaatgcaatagtagatggtgaaaaagatacaagtgtgatgacccatatacctaatgtcttaata 25225302  T
Q  636 aggttgtgggtgaagatgtggtgtcgatatcacttttgtggtttctcttggcctaatgtgattatccaacttaatttag 714  Q
    | | | ||  |||||||||| |||| || ||||||||  | || ||||||| |||||||||||||| ||| ||||||||    
T  25225301 aagatatgaatgaagatgtgatgtcaatctcacttttacgattgctcttggtctaatgtgattatcgaacctaatttag 25225223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 601 - 700
Target Start/End: Original strand, 10020181 - 10020280
Alignment:
Q  601 atataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtggtgtcgatatcacttttgtggtttctcttggcctaatgtgattat 700  Q
    |||||||||||||||||||||||  |||||| ||||| || |||||| | || | || || || |||||| |||||||||||||||  ||||||| ||||    
T  10020181 atataagtgagatgactcatatacttaatatcttaagattttgggtggacatttagtatcaatctcacttgtgtggtttctcttggtttaatgtggttat 10020280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 131
Target Start/End: Original strand, 34024754 - 34024812
Alignment:
Q  73 gggttagaacttgatcatacgtaaaatattaggtgagatatggtattattttcatttgt 131  Q
    ||||||||| |||||| ||| ||||||||||| ||||||||||||| ||| ||||||||    
T  34024754 gggttagaatttgatcttacttaaaatattagatgagatatggtatcattctcatttgt 34024812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 560 - 629
Target Start/End: Complemental strand, 19816436 - 19816367
Alignment:
Q  560 ttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaat 629  Q
    |||||| ||||||||||||  || |||||||||  |||||||||||||||| ||||| |||||| |||||    
T  19816436 ttaaagcttcacattagataaaaaagtagatgatgagaaaaatataagtgaaatgacccatatacctaat 19816367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 277
Target Start/End: Original strand, 34024877 - 34024945
Alignment:
Q  209 catagcctgattcgactttatggagaagcataagtggtttctggtgatatatcctggatgcgaagggtc 277  Q
    ||||| |||||||||||||||| ||||||| |||| |||| ||||| || ||||| |||||| ||||||    
T  34024877 catagtctgattcgactttatgtagaagcagaagtagtttttggtggtagatcctagatgcgtagggtc 34024945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 477 - 588
Target Start/End: Original strand, 50244310 - 50244419
Alignment:
Q  477 attttatttggctatgtcaccatattacatatatggagagagtctcacgtttaagagagaagtgttaatatgttagatgtgagttaaagtttcacattag 576  Q
    ||||||||||| |||||||||| |||||| || |  ||| |||||||| |||| ||||||   |||||| |||   |||||||||||||||||| ||| |    
T  50244310 attttatttggttatgtcaccaaattacagatgt--agaaagtctcacatttaggagagagaagttaatttgtcgtatgtgagttaaagtttcatattgg 50244407  T
Q  577 atgcaatagtag 588  Q
    |||||| |||||    
T  50244408 atgcaagagtag 50244419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 482 - 613
Target Start/End: Complemental strand, 34849942 - 34849817
Alignment:
Q  482 atttggctatgtcaccatattacatatatggagagagtctcacgtttaagagagaagtgttaatatgttagatgtgagttaaagtttcacattagatgca 581  Q
    |||||| ||||||||||||||||| ||  | | | |||||||| |||||||||    ||||||| ||| | |||||| |||||||||||||||  || ||    
T  34849942 atttggatatgtcaccatattacacat--gcaaaaagtctcacatttaagaga----tgttaatgtgtcatatgtgaattaaagtttcacattgaattca 34849849  T
Q  582 atagtagatgaccagaaaaatataagtgagat 613  Q
    || |||||||   || ||||||||||||||||    
T  34849848 atggtagatggtgaggaaaatataagtgagat 34849817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1743 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 603 - 752
Target Start/End: Complemental strand, 252 - 103
Alignment:
Q  603 ataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtggtgtcgatatcacttttgtggtttctcttggcctaatgtgattatcc 702  Q
    |||||||| |||||||||||||||||| | ||||||||  || || |||||||||||| || ||||||||||||| ||| || | |||||||||| |||     
T  252 ataagtgatatgactcatatatctaatgtcttaaggtttaggatggagatgtggtgtcaatctcacttttgtggtatctgttagtctaatgtgatgatca 153  T
Q  703 aacttaatttagtctcctccaaaagctacaacattatgatgaattgtttt 752  Q
    || | ||| |||  ||| ||| |||  |||||||||||||||| ||||||    
T  152 aattcaatgtagaatccaccagaagtcacaacattatgatgaactgtttt 103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 8e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 513 - 650
Target Start/End: Original strand, 1599669 - 1599806
Alignment:
Q  513 agagagtctcacgtttaagagagaagtgttaatatgttagatgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgaga 612  Q
    ||||||||||| | |||| |||||  ||||||| ||| |  ||||||||||| |  ||||||  |||||||||||||||   ||||| ||||||||||||    
T  1599669 agagagtctcatgcttaatagagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagaaacatataagtgaga 1599768  T
Q  613 tgactcatatatctaatatattaaggttgtgggtgaag 650  Q
    |||||||| |||||||| | ||||| || |||||||||    
T  1599769 tgactcatgtatctaatgtcttaagattttgggtgaag 1599806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 554 - 660
Target Start/End: Complemental strand, 31737274 - 31737168
Alignment:
Q  554 tgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatg 653  Q
    ||||||||||| ||||||||| ||||||| ||||||||   |  || ||| |||||| |||| ||||||| |||||| |||||| ||  | |||||||||    
T  31737274 tgtgagttaaaatttcacattggatgcaagagtagatgttgaacaacatacaagtgatatgattcatatacctaatacattaagatttagtgtgaagatg 31737175  T
Q  654 tggtgtc 660  Q
    |||||||    
T  31737174 tggtgtc 31737168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 584 - 705
Target Start/End: Complemental strand, 18090021 - 18089900
Alignment:
Q  584 agtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtggtgtcgatatcacttttgtggtttctct 683  Q
    ||||||||  |||||| |||||| ||||||||   ||||| |||||   |||||||| ||||||||||||||||||| || |||| | ||| ||| ||||    
T  18090021 agtagatgttcagaaacatataattgagatgaacaatatacctaatgccttaaggttttgggtgaagatgtggtgtcaatctcacctctgtagttgctct 18089922  T
Q  684 tggcctaatgtgattatccaac 705  Q
    | | ||||| |||| |||||||    
T  18089921 tagtctaatatgatgatccaac 18089900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 560 - 615
Target Start/End: Complemental strand, 9450763 - 9450708
Alignment:
Q  560 ttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatga 615  Q
    ||||||||||||||| |||| || |||||||||  |||||||||||||||| ||||    
T  9450763 ttaaagtttcacattggatgaaagagtagatgatgagaaaaatataagtgaaatga 9450708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 480 - 579
Target Start/End: Original strand, 20874145 - 20874246
Alignment:
Q  480 ttatttggctatgtcaccatattacatat--atggagagagtctcacgtttaagagagaagtgttaatatgttagatgtgagttaaagtttcacattaga 577  Q
    ||||||||||||||| |  ||||||| ||  ||| ||||||| ||||| ||||| ||||  ||||||| ||| | ||||||||||||| || ||||||||    
T  20874145 ttatttggctatgtctctttattacacatgcatgcagagagtttcacgcttaagggagagatgttaatgtgtcaaatgtgagttaaagatttacattaga 20874244  T
Q  578 tg 579  Q
    ||    
T  20874245 tg 20874246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 644 - 705
Target Start/End: Original strand, 27100245 - 27100306
Alignment:
Q  644 ggtgaagatgtggtgtcgatatcacttttgtggtttctcttggcctaatgtgattatccaac 705  Q
    |||||||||||| |||| || ||| |||||| ||||||||| | ||| ||||||||||||||    
T  27100245 ggtgaagatgtgatgtctatttcatttttgtagtttctcttagactagtgtgattatccaac 27100306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 8e-17; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 539 - 660
Target Start/End: Complemental strand, 3395526 - 3395405
Alignment:
Q  539 tgttaatatgttagatgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaagg 638  Q
    ||||||| ||| || ||||||||||| |  ||| ||  |||||||||||||||   ||||| ||||||||||||||||||||||||||||| | |||||     
T  3395526 tgttaatgtgtcaggtgtgagttaaaataacactttgaatgcaatagtagatgttgagaaacatataagtgagatgactcatatatctaatgtcttaaga 3395427  T
Q  639 ttgtgggtgaagatgtggtgtc 660  Q
    || ||||||||| |||| ||||    
T  3395426 ttttgggtgaagttgtgatgtc 3395405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 598 - 761
Target Start/End: Original strand, 14908811 - 14908974
Alignment:
Q  598 aaaatataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtggtgtcgatatcacttttgtggtttctcttggcctaatgtgat 697  Q
    ||||||||||||||||| | || |||||||||   |||||| | | |||||||||| |||||| || |||  |||||||||  |||| || |||||||||    
T  14908811 aaaatataagtgagatgtcccacatatctaatgctttaaggatttaggtgaagatgaggtgtcaatctcatatttgtggttgatcttagcttaatgtgat 14908910  T
Q  698 tatccaacttaatttagtctcctccaaaagctacaacattatgatgaattgttttattatatat 761  Q
    ||||||||| | ||||  || |   |||||  |||||||||||||||| |||||| ||||||||    
T  14908911 tatccaactcattttaaccttccaaaaaagtcacaacattatgatgaactgtttttttatatat 14908974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 554 - 673
Target Start/End: Complemental strand, 39403495 - 39403378
Alignment:
Q  554 tgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatg 653  Q
    ||||||||||||||||| ||| ||||||| |||||||||  ||||||||||  |||||||||| || | | |||||  ||||| ||| ||| |||| |||    
T  39403495 tgtgagttaaagtttcagattggatgcaagagtagatgatgagaaaaatat--gtgagatgacccaaacacctaatgcattaatgttttggatgaacatg 39403398  T
Q  654 tggtgtcgatatcacttttg 673  Q
    ||||||| || |||||||||    
T  39403397 tggtgtcaatctcacttttg 39403378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 554 - 629
Target Start/End: Complemental strand, 36727692 - 36727617
Alignment:
Q  554 tgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaat 629  Q
    ||||| ||||| ||||||||||||||||| ||||||||   ||||| ||||| ||||||||||| ||||| |||||    
T  36727692 tgtgacttaaaatttcacattagatgcaaaagtagatgttaagaaacatatatgtgagatgactaatatagctaat 36727617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 554 - 681
Target Start/End: Original strand, 24967973 - 24968099
Alignment:
Q  554 tgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatg 653  Q
    ||||| |||||||| |||||| ||||||||| ||||||   |  || |||||||||| || || ||||||| ||||   ||||||||  |||||||||||    
T  24967973 tgtgatttaaagttccacattggatgcaataatagatgttgaacaacatataagtgatataacccatatat-taatgacttaaggtttagggtgaagatg 24968071  T
Q  654 tggtgtcgatatcacttttgtggtttct 681  Q
    ||||||| |  |||||| ||||||||||    
T  24968072 tggtgtcaaactcacttgtgtggtttct 24968099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 539 - 660
Target Start/End: Complemental strand, 5788945 - 5788826
Alignment:
Q  539 tgttaatatgttagatgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaagg 638  Q
    ||||||| ||| | |||||||||||| |  ||||||  |||||||||||||||   |  || ||||||||||||||||||  ||||||||| | |||||     
T  5788945 tgttaatgtgtcaaatgtgagttaaaataacacattgaatgcaatagtagatgttgaacaacatataagtgagatgactc--atatctaatgtcttaaga 5788848  T
Q  639 ttgtgggtgaagatgtggtgtc 660  Q
    || ||||||||| |||| ||||    
T  5788847 ttttgggtgaagttgtgatgtc 5788826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 555 - 629
Target Start/End: Complemental strand, 29975979 - 29975905
Alignment:
Q  555 gtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaat 629  Q
    ||||| |||||||  ||||||||||||||||||  ||   |||||||||||||  |||||||||||||| |||||    
T  29975979 gtgagataaagttctacattagatgcaatagtaagtggtgagaaaaatataagacagatgactcatatacctaat 29975905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 577 - 655
Target Start/End: Complemental strand, 41754196 - 41754118
Alignment:
Q  577 atgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtg 655  Q
    |||||||||||||||   ||||| |||||  ||| ||||||||| |||||||| ||||||| || ||||||||| ||||    
T  41754196 atgcaatagtagatgttgagaaacatatatatgatatgactcatgtatctaatgtattaagattttgggtgaagttgtg 41754118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 554 - 694
Target Start/End: Complemental strand, 38015991 - 38015851
Alignment:
Q  554 tgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatg 653  Q
    ||||||||||| |  ||||||  |||||||||||||||   || || |||||||||||||||||||||||||||||   ||||| || ||||||||| ||    
T  38015991 tgtgagttaaaataacacattgaatgcaatagtagatgttgagcaacatataagtgagatgactcatatatctaatgacttaagattttgggtgaagttg 38015892  T
Q  654 tggtgtcgatatcacttttgtggtttctcttggcctaatgt 694  Q
    || |||| || |||||| |||| || || || |||||||||    
T  38015891 tgatgtcaatctcacttgtgtgcttgcttttagcctaatgt 38015851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 602 - 705
Target Start/End: Original strand, 24539656 - 24539759
Alignment:
Q  602 tataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtggtgtcgatatcacttttgtggtttctcttggcctaatgtgattatc 701  Q
    ||||||| |||||||||||||| ||||||  |||||  | |||||||||||||| |||| || |||||| |||||||  |||| ||||||| |||||||     
T  24539656 tataagtaagatgactcatatacctaatactttaagactttgggtgaagatgtgttgtcaatctcacttgtgtggttgatcttagcctaatatgattata 24539755  T
Q  702 caac 705  Q
    ||||    
T  24539756 caac 24539759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 480 - 674
Target Start/End: Complemental strand, 19319039 - 19318849
Alignment:
Q  480 ttatttggctatgtcaccatattacatatatggagagagtctcacgtttaagagagaagtgttaatatgttagatgtgagttaaagtttcacattagatg 579  Q
    ||||||| ||||||||||| |||||||||  | | ||||||||||  |||| |||||  ||||| | ||| | || ||||||||| || ||||||  |||    
T  19319039 ttatttgactatgtcaccaaattacatat--gcatagagtctcacacttaatagaga--tgttattgtgtcatatatgagttaaatttccacattgaatg 19318944  T
Q  580 caatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtggtgtcgatatcacttttgt 674  Q
    ||  |||||||    ||| |||||||||||||||||| |||| | |||||   | |||||| ||| | |||| |||||||| |||||||||||||    
T  19318943 cacgagtagatagtgagataaatataagtgagatgacacatacacctaatgcttgaaggttttggataaagacgtggtgtcaatatcacttttgt 19318849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 479 - 612
Target Start/End: Original strand, 9025673 - 9025805
Alignment:
Q  479 tttatttggctatgtcaccatattacatatatggagagagtctcacgtttaagagagaagtgttaatatgttagatgtgagttaaagtttcacattagat 578  Q
    ||||||||| |||||||||| |||||| || |  ||| |||||||| |||| ||||||   |||||| |||   |||||||||||||||||| ||| |||    
T  9025673 tttatttggttatgtcaccaaattacagatgt--agaaagtctcacatttaggagagagaagttaatttgtcgtatgtgagttaaagtttcatattggat 9025770  T
Q  579 gcaatagtagatgaccagaa-aaatataagtgaga 612  Q
    |||| ||||| ||  || || ||||||||||||||    
T  9025771 gcaagagtaggtggtcaaaataaatataagtgaga 9025805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 539 - 705
Target Start/End: Complemental strand, 42954024 - 42953857
Alignment:
Q  539 tgttaatatgttagatgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgac-tcatatatctaatatattaag 637  Q
    ||||||||||| | |||||||||||||||||| ||||||||||  |||| |||   ||||| ||||| || | ||||| ||||||| |||||   ||||     
T  42954024 tgttaatatgtcatatgtgagttaaagtttcatattagatgcaggagtatatggtgagaaacatatacgtaaaatgacttcatatacctaatgctttaaa 42953925  T
Q  638 gttgtgggtgaagatgtggtgtcgatatcacttttgtggtttctcttggcctaatgtgattatccaac 705  Q
    | | ||| |||||| ||| |||| |  |||||| |||| ||  ||||  |||||||||||||||||||    
T  42953924 gatttggatgaagaagtgatgtcaaactcacttgtgtgattgatcttaacctaatgtgattatccaac 42953857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 553 - 639
Target Start/End: Complemental strand, 4704197 - 4704111
Alignment:
Q  553 atgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaaggt 639  Q
    |||||||||||||||||| |||| |||||| | |||||||  |||||||||| ||||||||||| |||| ||| | |||||||||||    
T  4704197 atgtgagttaaagtttcatattacatgcaagaatagatgatgagaaaaatattagtgagatgacccataaatcaactatattaaggt 4704111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 548 - 675
Target Start/End: Complemental strand, 4714353 - 4714226
Alignment:
Q  548 gttagatgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaaggttgtgggtg 647  Q
    |||| |||||||||||| ||| | ||| ||||| | | |||||||  |||||||||| |||||||||| ||||| |||   |||||| ||||| | | ||    
T  4714353 gttatatgtgagttaaaattttatattggatgcgagaatagatgatgagaaaaatatgagtgagatgattcataaatcagctatattgaggtttttgatg 4714254  T
Q  648 aagatgtggtgtcgatatcacttttgtg 675  Q
    |||||||| |||  || |||||||||||    
T  4714253 aagatgtgatgtgaatctcacttttgtg 4714226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 607 - 660
Target Start/End: Original strand, 6189866 - 6189919
Alignment:
Q  607 gtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtggtgtc 660  Q
    ||||||||||| |||||| |||| |||||||| | | |||||||||||||||||    
T  6189866 gtgagatgactaatatatataatgtattaaggctttaggtgaagatgtggtgtc 6189919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 603 - 696
Target Start/End: Complemental strand, 22681229 - 22681136
Alignment:
Q  603 ataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtggtgtcgatatcacttttgtggtttctcttggcctaatgtga 696  Q
    |||||||| |||||||||||| ||||| | ||||||||  ||||| |||||||||||| || ||||||||||||| ||| || | |||||||||    
T  22681229 ataagtgatatgactcatatacctaatgtcttaaggtttagggtggagatgtggtgtcaatctcacttttgtggtatctgttagtctaatgtga 22681136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 554 - 629
Target Start/End: Original strand, 13228720 - 13228795
Alignment:
Q  554 tgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaat 629  Q
    ||||||||||| |  ||||||  |||||||||||||||   ||||| |||||||||||||||||||||||||||||    
T  13228720 tgtgagttaaaataacacattgaatgcaatagtagatgttgagaaacatataagtgagatgactcatatatctaat 13228795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 554 - 708
Target Start/End: Original strand, 14285289 - 14285443
Alignment:
Q  554 tgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatg 653  Q
    ||||||||||||||||| |||  |||||  |||||||||  ||||| |||||||||||||||   ||||||||||| | |||||| | |||  |||||||    
T  14285289 tgtgagttaaagtttcatattgaatgcatcagtagatgaagagaaacatataagtgagatgatcaatatatctaatgtcttaaggatttggacgaagatg 14285388  T
Q  654 tggtgtcgatatcacttttgtggtttctcttggcctaatgtgattatccaactta 708  Q
    | || || ||   | |  |||||||  ||||| |||||||||||||| |||||||    
T  14285389 tagtttcaatcagaataatgtggttgttcttgacctaatgtgattatacaactta 14285443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 560 - 656
Target Start/End: Original strand, 3773720 - 3773816
Alignment:
Q  560 ttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtgg 656  Q
    |||||||| ||||||   ||||| ||||||||   | ||||||||| |||| |||||||||||||||||| | |||||||| | | |||||||||||    
T  3773720 ttaaagttccacattgactgcaagagtagatggtaacaaaaatataggtgaaatgactcatatatctaatgttttaaggttttagatgaagatgtgg 3773816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 553 - 629
Target Start/End: Complemental strand, 14265707 - 14265631
Alignment:
Q  553 atgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaat 629  Q
    ||||||| |||||||  ||||| |||||||| |||||||   ||||||||||||| || || |||||||||||||||    
T  14265707 atgtgaggtaaagttctacattggatgcaattgtagatggtgagaaaaatataagagaaataactcatatatctaat 14265631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 553 - 706
Target Start/End: Original strand, 6555328 - 6555481
Alignment:
Q  553 atgtgagttaaagtttcacattagatgcaatagtagat-gaccagaaaaatataagtgagatgactcatatatctaatatattaaggttgtgggtgaaga 651  Q
    |||||||||||||||||| ||| ||||||| ||||| | | | | |||||||||||||||||||| || ||| ||||| | ||||  || ||| ||| ||    
T  6555328 atgtgagttaaagtttcatattggatgcaagagtaggtggtcaaaaaaaatataagtgagatgacacaaataactaatgtcttaaaatt-tggatgagga 6555426  T
Q  652 tgtggtgtcgatatcacttttgtggtttctcttggcctaatgtgattatccaact 706  Q
    ||||||||   | |||||||| ||| | || ||  || |||||||||||||||||    
T  6555427 tgtggtgttagtttcacttttatgggtgcttttacccaaatgtgattatccaact 6555481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 539 - 660
Target Start/End: Original strand, 13910150 - 13910271
Alignment:
Q  539 tgttaatatgttagatgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaagg 638  Q
    ||||||| ||| | ||||||||||||||| || |||  |||||  |||||| ||  ||||| |||||| ||||||||  |||||||||||| | ||||||    
T  13910150 tgttaatgtgtcatatgtgagttaaagttccatattgaatgcatcagtagacgaagagaaacatataaatgagatgatccatatatctaatgtcttaagg 13910249  T
Q  639 ttgtgggtgaagatgtggtgtc 660  Q
     | |||  |||||||| |||||    
T  13910250 atttggacgaagatgtagtgtc 13910271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 636 - 697
Target Start/End: Complemental strand, 28474868 - 28474807
Alignment:
Q  636 aggttgtgggtgaagatgtggtgtcgatatcacttttgtggtttctcttggcctaatgtgat 697  Q
    ||||| || |||||||||||||||| || ||| ||||| |||||||||||| | ||||||||    
T  28474868 aggttttgagtgaagatgtggtgtcaatctcatttttggggtttctcttggtcaaatgtgat 28474807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 479 - 719
Target Start/End: Complemental strand, 16516 - 16277
Alignment:
Q  479 tttatttggctatgtcaccatattacatatatggagagagtctcacgtttaagagagaagtgttaatatgttagatgtgagttaaagtttcacattagat 578  Q
    ||||||||| |||||||||| |||||| || |  ||| |||||||| |||| ||||||   |||||| |||   |||||||||||||||||| ||| |||    
T  16516 tttatttggttatgtcaccaaattacagatgt--agaaagtctcacatttaggagagagaagttaatttgtcgtatgtgagttaaagtttcatattggat 16419  T
Q  579 gcaatagtagat-gaccagaaaaatataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtggtgtcgatatcacttttgtggt 677  Q
    |||| ||||| | | | | |||||||||||||||||||| || ||| |||||   ||||  || ||| ||| ||||||||||   | |||||||| |||     
T  16418 gcaagagtaggtggtcaaaaaaaatataagtgagatgacacaaataactaatgccttaaaattttggatgaggatgtggtgttagtttcacttttatggg 16319  T
Q  678 ttctcttggcctaatgtgattatccaacttaatttagtctcc 719  Q
    | || ||  || ||||||||||||||||| | ||||| ||||    
T  16318 tgcttttacccaaatgtgattatccaactcagtttaggctcc 16277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1315 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 601 - 697
Target Start/End: Original strand, 1327 - 1423
Alignment:
Q  601 atataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtggtgtcgatatcacttttgtggtttctcttggcctaatgtgat 697  Q
    |||||||| | |||||  ||||||||||  | |||||||| ||| ||||||||||||||| || |||||| || |||||||||| ||| ||||||||    
T  1327 atataagttaaatgacaaatatatctaaagtcttaaggttttggatgaagatgtggtgtcaatctcacttatggggtttctcttagccaaatgtgat 1423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 601 - 697
Target Start/End: Complemental strand, 744 - 648
Alignment:
Q  601 atataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtggtgtcgatatcacttttgtggtttctcttggcctaatgtgat 697  Q
    |||||||| | |||||  ||||||||||  | |||||||| ||| ||||||||||||||| || |||||| || |||||||||| ||| ||||||||    
T  744 atataagttaaatgacaaatatatctaaagtcttaaggttttggatgaagatgtggtgtcaatctcacttatggggtttctcttagccaaatgtgat 648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 554 - 697
Target Start/End: Complemental strand, 47218 - 47075
Alignment:
Q  554 tgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatg 653  Q
    |||||||||||||||||| ||  ||| |||||||||||   |  || |||||||||||||||| || ||| || || | |||||  | ||||||||||||    
T  47218 tgtgagttaaagtttcacgttgtatggaatagtagatgttgaacaacatataagtgagatgacacacatacctcatgtcttaagactttgggtgaagatg 47119  T
Q  654 tggtgtcgatatcacttttgtggtttctcttggcctaatgtgat 697  Q
    ||||||| ||  | | | ||||||| ||||| | ||||||||||    
T  47118 tggtgtcaatcgcgcatgtgtggttgctcttaggctaatgtgat 47075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 620 - 706
Target Start/End: Complemental strand, 46334 - 46248
Alignment:
Q  620 tatatctaatatattaaggttgtgggtgaagatgtggtgtcgatatcacttttgtggtttctcttggcctaatgtgattatccaact 706  Q
    |||||||||| |||||||||| | | ||| || |||||||| ||||||||| ||   |||||||| | | |||||||||||||||||    
T  46334 tatatctaatgtattaaggttttagatgatgaggtggtgtcaatatcacttatggcatttctcttagtcaaatgtgattatccaact 46248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1737 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold1737
Description:

Target: scaffold1737; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 480 - 579
Target Start/End: Original strand, 476 - 577
Alignment:
Q  480 ttatttggctatgtcaccatattacatat--atggagagagtctcacgtttaagagagaagtgttaatatgttagatgtgagttaaagtttcacattaga 577  Q
    ||||||||||||||| |  ||||||| ||  ||| ||||||| ||||| ||||| ||||  ||||||| ||| | ||||||||||||| || ||||||||    
T  476 ttatttggctatgtctctttattacacatgcatgcagagagtttcacgcttaagggagagatgttaatgtgtcaaatgtgagttaaagatttacattaga 575  T
Q  578 tg 579  Q
    ||    
T  576 tg 577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 539 - 660
Target Start/End: Complemental strand, 33318 - 33199
Alignment:
Q  539 tgttaatatgttagatgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaagg 638  Q
    ||||||| ||| | |||||||||||| |  ||||||  |||||||||||||||   |  || ||||||||||||||||||  ||||||||| | |||||     
T  33318 tgttaatgtgtcaaatgtgagttaaaataacacattgaatgcaatagtagatgttgaacaacatataagtgagatgactc--atatctaatgtcttaaga 33221  T
Q  639 ttgtgggtgaagatgtggtgtc 660  Q
    || ||||||||| |||| ||||    
T  33220 ttttgggtgaagttgtgatgtc 33199  T

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