View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5393-Insertion-4 (Length: 734)

Name: NF5393-Insertion-4
Description: NF5393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5393-Insertion-4
NF5393-Insertion-4
[»] chr1 (1 HSPs)
chr1 (8-734)||(11998350-11999069)


Alignment Details
Target: chr1 (Bit Score: 639; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 8 - 734
Target Start/End: Original strand, 11998350 - 11999069
Alignment:
Q  8 taccgaaaggtatacaagcttagcttctttacctcttcatggttcttcttcttttcatcctcttggtattcaagctcatgctgcaatgcaccaaaaccat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11998350 taccgaaaggtatacaagcttagcttctttacctcttcatggttcttcttcttttcatcctcttggtattcaagctcatgctgcaatgcaccaaaaccat 11998449  T
Q  108 atgccatcatcgttgtcgatgctgatgagggctcatgatatgagacctacagcgaaatttgagaaagattgttttggagcagcaccgatgtttatgcata 207  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11998450 atgccatcatcgtcgtcgatgctgatgagggctcatgatatgagacctacagcgaaattcgagaaagattgttttggagcagcaccgatgtttatgcata 11998549  T
Q  208 atgacgatgttggcgtattttggcctggaagtttcaggcagataaatcaaagtgttcataattcaaatttgaatactagttttgtagcaactgaacctcc 307  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11998550 atgacgatgttggcatattttggcctggaagtttcaggcagataaatcaaagtgttcataattcaaatttgaatactagttttgtagcaactgaacctcc 11998649  T
Q  308 tcaacaaacatctagtacatctcctgatcttactttgaggctttaatatttttgtatcttaattaaattctaatattagnnnnnnngtggcaataattaa 407  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||    |||    
T  11998650 tcaacaaacatctactacatctcctgatcttactttgaggctttaatatttttgtatcttaattaaattctaatattagtttttttgtggcaa----taa 11998745  T
Q  408 acaactatatttctcatgttcatttttctctatggacatgaaattattaattaactctacttgcattgtacaagtaattagatgtgtatttttagtgaca 507  Q
    ||||||| ||||||||||||||   ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11998746 acaactacatttctcatgttca---ttctctatggacatgaaattattgattaactctacttgcattgtacaagtaattagatgtgtatttctagtgaca 11998842  T
Q  508 tgtttatctcttatgaaattttcagtattatttgtttcttatagtttgtgtttcacttcattattaatgtcgtttggttataatccctgaacctcaacct 607  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11998843 tgtttatctcttttgaaattttcagtattatttgtttcttatagtttgtgtttcacttcattattaatgtcgtttggttataatccctgaacctcaacct 11998942  T
Q  608 gaatttatatagaagttatgtagttatttcataagataagtatacttttttaattagatttttgcaatgatcaagtttgaatttcgcaaataatttacat 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11998943 gaatttatatagaagttatgtagttatttcataagataagtatacttttttaattagatttttgcaatgatcaagtttgaatttcgcaaataatttacat 11999042  T
Q  708 taagagtgagtaaatacccaaaatggt 734  Q
    |||| ||||||||||||||||||||||    
T  11999043 taagggtgagtaaatacccaaaatggt 11999069  T

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