View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5393-Insertion-5 (Length: 625)
Name: NF5393-Insertion-5
Description: NF5393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5393-Insertion-5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 12 - 625
Target Start/End: Complemental strand, 13992111 - 13991495
Alignment:
| Q |
12 |
aatctattttaaaataaactttttattaagtgggatgatttgataaaataaaatgcttttattgaatgccaatttaaactgattatattggcaatacatg |
111 |
Q |
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| T |
13992111 |
aatctattttaaaataaactttttactaagtgggatgatttgataaaataaaatgcttttattgaatgccaatttaaactgattatattggcaatacatg |
13992012 |
T |
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| Q |
112 |
ttgtttaaacacctttaaatttgtttgatattaaatttgattaannnnnnnnnngt---ggtcaagatttggttaannnnnnnnataaaggtaaaggaat |
208 |
Q |
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| T |
13992011 |
ttgtttaaaaacctttaaatttttttgatattaaatttgattaattttttaatttttttggtcaagatttggttaattttttttataaaggtaaaggaat |
13991912 |
T |
|
| Q |
209 |
atttagttaatcatgcatgatgtattgtatgatagctagatagatattgtctgccacatcatgtatttaagaataatgtggaatttcacaccgttgatat |
308 |
Q |
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| T |
13991911 |
atttagttaatcatgcatgatgtattgtatgatagctagatagatattgtctgccacatcatgtatttaagaataatgtggaatttcacaccgttgatat |
13991812 |
T |
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| Q |
309 |
gacaaaggccaatctagctacccctttgtgatgctaatggtggagtattttcttgatggtgtggaacatcttattcatttaacattttgaaaaacaaatt |
408 |
Q |
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| T |
13991811 |
gacaaaggccaatctagctacccctttgtgatgctaatggtggagtattttcttgatggtgtggaacatcttattcatttaacattttgaaaaacaaatt |
13991712 |
T |
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| Q |
409 |
ggcataagcaagttctattcaaagtctcattatttgtttgacgttttcttggtaatcatatcttaaccaaagacaaattattaggaaaaggtattcttta |
508 |
Q |
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| T |
13991711 |
ggcataagcaagttctattcaaagtctcattatttgtttgacgttttcttggtaatcatatcttaaccaaagacaaattattaggaaaaagtattcttta |
13991612 |
T |
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| Q |
509 |
acaagactcaatcatgtgcgtttggttgtggcttggttgaatcgacacagcatcnnnnnnngggttgtttcgtattcggctctatttggaatcttttttg |
608 |
Q |
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| T |
13991611 |
acaagactcaattatgtgcgtttggttgtggcttggttgaatcgacacaacatctttttttgggttgttccgtattcggctttatttggaatctttttcg |
13991512 |
T |
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| Q |
609 |
gcactcgtttgatatcg |
625 |
Q |
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| T |
13991511 |
gcactcgtttggtatcg |
13991495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 8 - 613
Target Start/End: Original strand, 3966402 - 3967006
Alignment:
| Q |
8 |
atacaatctattttaaaataaactttttattaagtgggatgatttgataaaataaaatgcttttattgaatgccaatttaaactgattatattggcaata |
107 |
Q |
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| T |
3966402 |
atacaatctattttaaaataaactttttattaagtgggatgatttgataaaataaaatgcttttattgaatgccaatttaaactgattatgttggcaata |
3966501 |
T |
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| Q |
108 |
catgttgtttaaacacctttaaatttgtttgatattaaatttgattaannnnnnnnnngtggtcaagatttggttaannnnnnnn-ataaaggtaaagga |
206 |
Q |
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| T |
3966502 |
catgttgtttaaacacctttaaatttgtttgatatttaatttgattaattttttttt--tggtcaagatttgatttttttttttttataaaggtaaagga |
3966599 |
T |
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| Q |
207 |
atatttagttaatcatgcatgatgtattgtatgatagctagatagatattgtctgccacatcatgtatttaagaataatgtggaatttcacaccgttgat |
306 |
Q |
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| T |
3966600 |
atatttagttaatcatgcatgatgtattgtatgatagctagatagatattgtctgccacatcatgtatttaagaataatgtggaatttcacaccgttgat |
3966699 |
T |
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| Q |
307 |
atgacaaaggccaatctagctacccctttgtgatgctaatggtggagtattttcttgatggtgtggaacatcttattcatttaacattttgaaaaacaaa |
406 |
Q |
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| T |
3966700 |
atgacaaaggccaatctagctacccctttgtgatgctaatggtggggtattttcttgatggtgtggaacatcttattcatttaacattttgaaaaacaaa |
3966799 |
T |
|
| Q |
407 |
ttggcataagcaagttctattcaaagtctcattatttgtttgacgttttcttggtaatcatatcttaaccaaagacaaattattaggaaaaggtattctt |
506 |
Q |
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| T |
3966800 |
ttggcataagcaagttctattcaaagtctcattatttgtttgacgttttcttggtaatcatatcttaaccaaagataaattattaggaaaatgtattctt |
3966899 |
T |
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| Q |
507 |
taacaagactcaatcatgtgcgtttggttgtggcttggttgaatcgacacagcatcnnnnnnngggttgtttcgtattcggctctatttggaatcttttt |
606 |
Q |
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| T |
3966900 |
taacaagactcaattatgtgcgcttggttgtggcttggttgaatcgacacaacatctttttttggattgttccgtattcggctctgtttggaatcttctt |
3966999 |
T |
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| Q |
607 |
tggcact |
613 |
Q |
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| T |
3967000 |
cggcact |
3967006 |
T |
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