View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5393-Insertion-9 (Length: 440)

Name: NF5393-Insertion-9
Description: NF5393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5393-Insertion-9
NF5393-Insertion-9
[»] chr5 (3 HSPs)
chr5 (8-316)||(1985144-1985456)
chr5 (380-440)||(1985020-1985080)
chr5 (74-141)||(23151234-23151301)
[»] chr3 (2 HSPs)
chr3 (8-140)||(40851919-40852051)
chr3 (151-239)||(40851602-40851690)
[»] chr2 (2 HSPs)
chr2 (8-238)||(44657276-44657509)
chr2 (156-241)||(4244431-4244516)
[»] chr1 (5 HSPs)
chr1 (186-243)||(24439278-24439334)
chr1 (43-242)||(48097160-48097365)
chr1 (73-109)||(27466774-27466810)
chr1 (179-236)||(6352118-6352174)
chr1 (77-141)||(6352477-6352541)
[»] scaffold0996 (1 HSPs)
scaffold0996 (86-243)||(1490-1652)
[»] scaffold0067 (1 HSPs)
scaffold0067 (74-141)||(11033-11100)
[»] chr7 (3 HSPs)
chr7 (74-141)||(41147719-41147786)
chr7 (73-141)||(513816-513884)
chr7 (156-255)||(43970094-43970193)
[»] chr4 (2 HSPs)
chr4 (74-141)||(32499511-32499578)
chr4 (156-243)||(54421351-54421438)
[»] scaffold0007 (1 HSPs)
scaffold0007 (75-109)||(188461-188495)


Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 8 - 316
Target Start/End: Complemental strand, 1985456 - 1985144
Alignment:
Q  8 aaatctctatcatatgctatttgtttcacaaaggttcctctaaatgaatttggagacattgtccttcaatgtagaagtctcttacttaatagacccgact 107  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1985456 aaatctctatcatatgctatttgttccacaaaggttcctctaaatgaatttggagacattgtccttcaatgtagaagtctcttacttaatagacccgact 1985357  T
Q  108 ttttaatgccgcatgttcggaggcaagctaatagctcattgcacagccagagcatccttatctcatcctagccccatattttcaattatgtgccaactac 207  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1985356 ttttagtgccgcatgttcggaggcaagctaatagctcattgcacagccagagcatccttatctcatcctaaccccatattttcaattatgtgccaactac 1985257  T
Q  208 ttttgtattcgttga---ttatgaatgaaatgaattaatgttgtc-tttgctnnnnnnnnnnntatcttcgtacactttaaaccctatcctacggtacat 303  Q
    |||||||||||||||   ||||||||||||||||||||||||||| ||||||           |||||||||||||||||||||||||||||||||||||    
T  1985256 ttttgtattcgttgattattatgaatgaaatgaattaatgttgtcttttgctaaaaaaaataatatcttcgtacactttaaaccctatcctacggtacat 1985157  T
Q  304 ctaatagccagtg 316  Q
    |||||||||||||    
T  1985156 ctaatagccagtg 1985144  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 380 - 440
Target Start/End: Complemental strand, 1985080 - 1985020
Alignment:
Q  380 catattaacatgaatatgtgcattatgtgtgtgtgttcgttcttgaatatatatgtgtgtg 440  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1985080 catattaacatgaatatgtgcattatgtgtgtgtgttcgttcttgaatatatatatgtgtg 1985020  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 23151234 - 23151301
Alignment:
Q  74 caatgtagaagtctcttacttaatagacccgactttttaatgccgcatgttcggaggcaagctaatag 141  Q
    ||||||||||||||||||||| ||| ||||||||||  | || || ||||| |||||||||| |||||    
T  23151234 caatgtagaagtctcttacttgataaacccgactttgcagtgtcgtatgttaggaggcaagcaaatag 23151301  T

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Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 40852051 - 40851919
Alignment:
Q  8 aaatctctatcatatgctatttgtttcacaaaggttcctctaaatgaatttggagacattgtccttcaatgtagaagtctcttacttaatagacccgact 107  Q
    ||||||||| || |||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||| ||||    
T  40852051 aaatctctaccagatgctatttgttccacaaaggttcctctaaatgaatttggagaccttgtctttcaatgtagaagtctcttatttaatagacctgact 40851952  T
Q  108 ttttaatgccgcatgttcggaggcaagctaata 140  Q
     | || || | |||||||| |||||| ||||||    
T  40851951 atgtagtgtctcatgttcgtaggcaaactaata 40851919  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 151 - 239
Target Start/End: Complemental strand, 40851690 - 40851602
Alignment:
Q  151 cagccagagcatccttatctcatcctag-ccccatattttcaattatgtgccaactacttttgtattcgttgattatgaatgaaatgaat 239  Q
    ||||||||||||| |||||||||||||| |||||| |||||||||||   ||||||||||| |||||||||||||||||| |||||||||    
T  40851690 cagccagagcatctttatctcatcctagtccccatgttttcaattattgaccaactacttt-gtattcgttgattatgaacgaaatgaat 40851602  T

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Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 8 - 238
Target Start/End: Original strand, 44657276 - 44657509
Alignment:
Q  8 aaatctctatcatatgctatttgtttcacaaaggttcctctaaatgaatttggagacattgtccttcaatgtagaagtctcttacttaatagacccgact 107  Q
    |||||||||||| |||||||||||| ||||||| ||| ||||||||||||||||||  | ||| ||||||||| ||||||||||||||||||| ||||||    
T  44657276 aaatctctatcagatgctatttgttccacaaagattcttctaaatgaatttggagatctcgtctttcaatgtaaaagtctcttacttaatagatccgact 44657375  T
Q  108 ttttaatgccgcatgttcggaggcaagctaata-----gctcattgcacagccagagcatccttatctcatcctagccccatattttcaattatgtgcca 202  Q
    || || |  |||||||| ||||| || ||||||       |||||| | | | ||||||||||||||||||| ||| |||| | ||||||| |||| |||    
T  44657376 ttgtagtatcgcatgtttggaggtaaactaatatagttattcattgtataactagagcatccttatctcatcatag-cccaaaatttcaatgatgtacca 44657474  T
Q  203 actacttttgtattcgttgattatgaatgaaatgaa 238  Q
    ||||  |||| ||| ||||||||| |||||||||||    
T  44657475 acta-atttgcatttgttgattataaatgaaatgaa 44657509  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 241
Target Start/End: Original strand, 4244431 - 4244516
Alignment:
Q  156 agagcatccttatctcatcctagcccc-atattttcaattatgtgccaactacttttgtattcgttgattatgaatgaaatgaatta 241  Q
    |||||||| ||||||||||||||| |  | |||||||||||||| ||| || |||| ||| || ||| |||||||||||||||||||    
T  4244431 agagcatctttatctcatcctagctcttacattttcaattatgtaccatcttcttt-gtactctttgtttatgaatgaaatgaatta 4244516  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 186 - 243
Target Start/End: Original strand, 24439278 - 24439334
Alignment:
Q  186 ttttcaattatgtgccaactacttttgtattcgttgattatgaatgaaatgaattaat 243  Q
    |||||||||||||   ||||||||| ||||||||||||||||||||||||||||||||    
T  24439278 ttttcaattatgttttaactacttt-gtattcgttgattatgaatgaaatgaattaat 24439334  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 242
Target Start/End: Complemental strand, 48097365 - 48097160
Alignment:
Q  43 tcctctaaatgaatttggagacattgtccttcaatgtagaagtctcttacttaatagacccgactttttaatgccgcatgttcggaggcaagctaatag- 141  Q
    |||||||||||||||||| ||  || |  | ||||||| || ||||||||| |||||||| |||||| || ||  |||||||||||||| | | |||||     
T  48097365 tcctctaaatgaatttggtgatcttattttacaatgtaaaaatctcttactaaatagaccagactttgtagtgttgcatgttcggaggccaccaaatagg 48097266  T
Q  142 -----ctcattgcacagccagagcatccttatctcatcctagccc-catattttcaattatgtgccaactacttttgtattcgttgattatgaatgaaat 235  Q
         ||||| | | ||| || |||||| ||| |||  | ||||| | |||||||||| |||| ||||||||||| ||||| ||||||||||||||||||    
T  48097265 ttttgctcatagaatagctagggcatccatatatcactccagccctcgtattttcaataatgtaccaactacttt-gtatttgttgattatgaatgaaat 48097167  T
Q  236 gaattaa 242  Q
    || ||||    
T  48097166 gacttaa 48097160  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 109
Target Start/End: Original strand, 27466774 - 27466810
Alignment:
Q  73 tcaatgtagaagtctcttacttaatagacccgacttt 109  Q
    |||||||||||||||||||||||||| ||||||||||    
T  27466774 tcaatgtagaagtctcttacttaataaacccgacttt 27466810  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 6352174 - 6352118
Alignment:
Q  179 ccccatattttcaattatgtgccaactacttttgtattcgttgattatgaatgaaatg 236  Q
    |||||||||||||||  ||| ||||| ||||| ||||||||||| |||||||||||||    
T  6352174 ccccatattttcaatattgtaccaacaacttt-gtattcgttgagtatgaatgaaatg 6352118  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 6352541 - 6352477
Alignment:
Q  77 tgtagaagtctcttacttaatagacccgactttttaatgccgcatgttcggaggcaagctaatag 141  Q
    |||||||||||||||||||  || ||||| ||| || || ||||| ||||||||||||| |||||    
T  6352541 tgtagaagtctcttacttaccagtcccgattttgtagtgtcgcatattcggaggcaagcaaatag 6352477  T

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Target: scaffold0996 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0996
Description:

Target: scaffold0996; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 243
Target Start/End: Complemental strand, 1652 - 1490
Alignment:
Q  86 ctcttacttaatagacccgactttttaatgccgcatgttcggaggcaagctaata-----gctcattgcacagccagagcatccttatctcatcctag-c 179  Q
    ||||| || ||||||||||||||| || || || |||||||||||||||||||||     |||||| | |  || ||||| ||||||| ||||||||| |    
T  1652 ctcttgctcaatagacccgactttgtagtgtcgtatgttcggaggcaagctaatagggttgctcatagtattgctagagcttccttatgtcatcctagcc 1553  T
Q  180 cccatattttcaattatgtgccaactacttttgtattcgttgattatgaatgaaatgaattaat 243  Q
    |||||||||| |||  ||| ||  |||| |||||| || || |||||||||||||||| |||||    
T  1552 cccatatttttaatgttgtaccttctac-tttgtactccttaattatgaatgaaatgacttaat 1490  T

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Target: scaffold0067 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 11100 - 11033
Alignment:
Q  74 caatgtagaagtctcttacttaatagacccgactttttaatgccgcatgttcggaggcaagctaatag 141  Q
    ||||||||||||||||||||| ||| ||||||||||  | || || ||||| |||||||||| |||||    
T  11100 caatgtagaagtctcttacttgataaacccgactttgcagtgtcgtatgttaggaggcaagcaaatag 11033  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 41147719 - 41147786
Alignment:
Q  74 caatgtagaagtctcttacttaatagacccgactttttaatgccgcatgttcggaggcaagctaatag 141  Q
    ||||||||||||||||||||| ||| ||||||||||  | || || ||||| |||||||||| |||||    
T  41147719 caatgtagaagtctcttacttgataaacccgactttgcagtgtcgtatgttaggaggcaagcaaatag 41147786  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 141
Target Start/End: Original strand, 513816 - 513884
Alignment:
Q  73 tcaatgtagaagtctcttacttaatagacccgactttttaatgccgcatgttcggaggcaagctaatag 141  Q
    ||||||||  || ||||| || ||||||||||||||| || || || ||||| ||||||||||||||||    
T  513816 tcaatgtaagagcctcttgctcaatagacccgactttgtagtgtcgtatgtttggaggcaagctaatag 513884  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 255
Target Start/End: Original strand, 43970094 - 43970193
Alignment:
Q  156 agagcatccttatctcatcctagcccc-atattttcaattatgtgccaactacttttgtattcgttgattatgaatgaaatgaattaatgttgtctttgc 254  Q
    ||||| ||||||||  ||||||||||| |||||||| || |||| ||| ||||||| |||  | ||||||||||| |||||| |||||| ||| ||||||    
T  43970094 agagcgtccttatccaatcctagcccccatattttctatgatgtaccatctacttt-gtaccctttgattatgaacgaaatgcattaatcttgcctttgc 43970192  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 32499511 - 32499578
Alignment:
Q  74 caatgtagaagtctcttacttaatagacccgactttttaatgccgcatgttcggaggcaagctaatag 141  Q
    ||||||||||||||||||||| ||| ||||||||||  | || || ||||| |||||||||| |||||    
T  32499511 caatgtagaagtctcttacttgataaacccgactttgcagtgtcgtatgttaggaggcaagcaaatag 32499578  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 243
Target Start/End: Complemental strand, 54421438 - 54421351
Alignment:
Q  156 agagcatccttatctcatcctag-ccccatattttcaattatgtgccaactacttttgtattcgttgattatgaatgaaatgaattaat 243  Q
    ||||| |||||||| |||||||| |||||||||||| || ||||  ||||||| |||||| || |||||| || |||| ||||||||||    
T  54421438 agagcttccttatcacatcctagcccccatattttctatcatgtaacaactac-tttgtactctttgattttggatgatatgaattaat 54421351  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 109
Target Start/End: Complemental strand, 188495 - 188461
Alignment:
Q  75 aatgtagaagtctcttacttaatagacccgacttt 109  Q
    ||||||||||||||||||||| |||||||||||||    
T  188495 aatgtagaagtctcttacttattagacccgacttt 188461  T

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