View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5394-Insertion-2 (Length: 572)
Name: NF5394-Insertion-2
Description: NF5394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5394-Insertion-2 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 311 - 572
Target Start/End: Complemental strand, 45051151 - 45050888
Alignment:
| Q |
311 |
gaattttcctaggtggcccacccagcaatccagccccttcaccttccttcctctgttaaccaagcacaatcctcttttcactcttattctcccaacccac |
410 |
Q |
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| T |
45051151 |
gaattttcctaggtggcccacccagcaatcaagccccttcaccatccttcctctgttaaccaagcacaatcctcttttcactcttattctctcaacccac |
45051052 |
T |
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| Q |
411 |
ataccatttaactctct--gtctttgttgatgcaaatatagaatattgagtgactacatggttttattcttaactccacttgcaccattccctatttctc |
508 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45051051 |
ataccatttaactctctctgtctttgttgatgcaaatatagaatattgagtgactacatggttttgttcttaactccacttgcaccattccctatttctc |
45050952 |
T |
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| Q |
509 |
actcactcactcactctgtgtgtgtgtctttctctgtatatatgtatgtatacccctctctttg |
572 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45050951 |
actcactcactcactctgtgtgtgtgtctttctctgtatatatgtatgtatacccctctctttg |
45050888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 45051453 - 45051211
Alignment:
| Q |
8 |
taaaatactactcattagtgtgctctaaatatttagtatattttcatttttatcaaaatatgaaatattacgtggttgaaaacggtgcctttaaaagtat |
107 |
Q |
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| T |
45051453 |
taaaatactactcatcaatgtgctctaaatatt-agtatattttcatttttatcaaaatattaaatattatgtgcttgaaagcggtgcctttaaaaatat |
45051355 |
T |
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| Q |
108 |
ttatttttgcatggcgtctgtttataaataggataccaactagaaataagttgttctaaagacgtgtgttagcggagtccgatcaaagttgtcctgctag |
207 |
Q |
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| T |
45051354 |
ctatttttgcgtggcgtctgtttataaataggataccaactagaaacaagttgttccaaaggcgtgtgttagcggagtccgatcaaagttgtcctgctag |
45051255 |
T |
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| Q |
208 |
ccattggcggagcaaggtttgggttgaggccatggcccaccccc |
251 |
Q |
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| T |
45051254 |
ccagtggcggagcaaggtttgggctgaggccatggcccaccccc |
45051211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 79 - 209
Target Start/End: Original strand, 3284866 - 3284996
Alignment:
| Q |
79 |
gtggttgaaaacggtgcctttaaaagtatttatttttgcatggcgtctgtttataaataggataccaactagaaataagttgttctaaagacgtgtgtta |
178 |
Q |
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|||||||||| |||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||| | ||||||||| |||| ||||||||| |
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| T |
3284866 |
gtggttgaaagcggtgcctttaaaagtatctatttttgtgtggcgtctgtccctaaataggataccaactagagacaagttgttccaaaggcgtgtgtta |
3284965 |
T |
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| Q |
179 |
gcggagtccgatcaaagttgtcctgctagcc |
209 |
Q |
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| T |
3284966 |
gcggagttcgatcagagttgtccttctagcc |
3284996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 79 - 208
Target Start/End: Original strand, 3271749 - 3271878
Alignment:
| Q |
79 |
gtggttgaaaacggtgcctttaaaagtatttatttttgcatggcgtctgtttataaataggataccaactagaaataagttgttctaaagacgtgtgtta |
178 |
Q |
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|||||||||| |||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||| | ||||||||| |||| ||||||||| |
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| T |
3271749 |
gtggttgaaagcggtgcctttaaaagtatctatttttgtgtggcgtctgtccctaaataggataccaactagagacaagttgttccaaaggcgtgtgtta |
3271848 |
T |
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| Q |
179 |
gcggagtccgatcaaagttgtcctgctagc |
208 |
Q |
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| T |
3271849 |
gcggagttcgatcagagttgtccttctagc |
3271878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 368
Target Start/End: Original strand, 36753708 - 36753751
Alignment:
| Q |
325 |
ggcccacccagcaatccagccccttcaccttccttcctctgtta |
368 |
Q |
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| T |
36753708 |
ggcccacccagcaatccagccccttcaccttccttcctttgtta |
36753751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 94 - 199
Target Start/End: Complemental strand, 24453354 - 24453249
Alignment:
| Q |
94 |
gcctttaaaagtatttatttttgcatggcgtctgtttataaataggataccaactagaaataagttgttctaaagacgtgtgttagcggagtccgatcaa |
193 |
Q |
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| T |
24453354 |
gcctttaaaagttttaatttttgcatggcgtctgttcctaaatcggataccaactagagacatgttgttccaaaggtgtgtgttagcagagtccgatcag |
24453255 |
T |
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| Q |
194 |
agttgt |
199 |
Q |
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| T |
24453254 |
agttgt |
24453249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 119 - 206
Target Start/End: Original strand, 9880040 - 9880127
Alignment:
| Q |
119 |
tggcgtctgtttataaataggataccaactagaaataagttgttctaaagacgtgtgttagcggagtccgatcaaagttgtcctgcta |
206 |
Q |
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| T |
9880040 |
tggcgtctgtttcgaaatcggttaccaactagagacaagttgttccaaaggcgtgtgttagcggagtccgatcagagttgttctgcta |
9880127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 460 - 516
Target Start/End: Complemental strand, 44486043 - 44485987
Alignment:
| Q |
460 |
gactacatggttttattcttaactccacttgcaccattccctatttctcactcactc |
516 |
Q |
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| T |
44486043 |
gactacatggttttgttcataactccacttgcaccattccctctttctcactcactc |
44485987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 387
Target Start/End: Complemental strand, 15155632 - 15155576
Alignment:
| Q |
331 |
cccagcaatccagccccttcaccttccttcctctgttaaccaagcacaatcctcttt |
387 |
Q |
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|||| ||||||||||||||||||||||||||| ||||| ||| ||||||||||||| |
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| T |
15155632 |
cccaacaatccagccccttcaccttccttcctttgttacgcaaacacaatcctcttt |
15155576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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