View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5394-Insertion-3 (Length: 318)
Name: NF5394-Insertion-3
Description: NF5394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5394-Insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 8 - 316
Target Start/End: Original strand, 2588508 - 2588816
Alignment:
| Q |
8 |
aagagaaatgtatcctgaatcattcttaaattcttcttgtgttggtgaaagcagttatgcgtctgtggaaacagatgattatgatgtggaatgtgatgag |
107 |
Q |
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| T |
2588508 |
aagagaaatgtatcctgaatcattcttaaaatcttcttgtgttggtgaaagcagttatgcgtctgtggaaacagatgattatgatgtggaatgtgatgag |
2588607 |
T |
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| Q |
108 |
cacaatctaggaaaacctttatcatcatgtgagggttctgataccaacatggttcatcaacttgaagaaactaattcttctcatcacgagacttcgatat |
207 |
Q |
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| T |
2588608 |
cacaatctagaaaaacctttatcatcatgtgagggttctgataccaacatggttcatcaacttgaagaaactaattcttctcatcacgagacttcaatat |
2588707 |
T |
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| Q |
208 |
gcattgatccacattaccaagaccatgatcatggaggttcttcaatgaacaatcttgttattgagagtaggggtgctaataagagaaaggctgaccaaat |
307 |
Q |
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| T |
2588708 |
gcattgatccacattaccaagaccatgatcatggaggttcttcaatgaacaatcttgttattgagagtaggggtgctaataagagaaaggctgaccaaat |
2588807 |
T |
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| Q |
308 |
aggaggaag |
316 |
Q |
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| T |
2588808 |
aggaggaag |
2588816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 295
Target Start/End: Original strand, 18343987 - 18344032
Alignment:
| Q |
250 |
caatgaacaatcttgttattgagagtaggggtgctaataagagaaa |
295 |
Q |
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| T |
18343987 |
caatgaacaatcttattattgagaatgggggtgctagtaagagaaa |
18344032 |
T |
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