View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5394_high_10 (Length: 261)

Name: NF5394_high_10
Description: NF5394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5394_high_10
NF5394_high_10
[»] chr5 (3 HSPs)
chr5 (19-256)||(3216961-3217198)
chr5 (19-256)||(3203039-3203276)
chr5 (19-255)||(3209013-3209249)


Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 3216961 - 3217198
Alignment:
Q  19 gccattccattttgcaggtggagagggcattccctcgtcagaaaaggaaggatgggagagggatattcctgtgtccaggattccaattatgatcccttta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3216961 gccattccattttgcaggtggagagggcattccctcgtcagaaaaggaaggatgggagagggatattcctgtgtccaggattccaattatgatcccttta 3217060  T
Q  119 ccgagattggaatttatccataatccttgactctgttgcaaccccaagaagcttggtgtgtgagttgtatgtaatgaaaggatcttttctggtcgaattg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  3217061 ccgagattggaatttatccataatccttgactctgttgcaaccccaagaagcttggtgtgtgagttgtatgtaatgagaggatgttttctggtcgaattg 3217160  T
Q  219 atagaacctcctccttctcttctagagcctttgcttct 256  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  3217161 atagaacctcctccttctcttctagagccttggcttct 3217198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 3203039 - 3203276
Alignment:
Q  19 gccattccattttgcaggtggagagggcattccctcgtcagaaaaggaaggatgggagagggatattcctgtgtccaggattccaattatgatcccttta 118  Q
    |||||||||||||||||||||||| ||||||||||| || |||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||    
T  3203039 gccattccattttgcaggtggagaaggcattccctcatcggaaaaggaaggatgtgagagggttattcctgtgtccagcattccaattatgatcccttta 3203138  T
Q  119 ccgagattggaatttatccataatccttgactctgttgcaaccccaagaagcttggtgtgtgagttgtatgtaatgaaaggatcttttctggtcgaattg 218  Q
    ||  |||||||||||  ||| ||| ||||| ||||||||||||||||||||||||| ||||||||||| |||||||| |  |||||||||||||||||||    
T  3203139 ccttgattggaatttccccacaattcttgattctgttgcaaccccaagaagcttggagtgtgagttgtgtgtaatgagaaaatcttttctggtcgaattg 3203238  T
Q  219 atagaacctcctccttctcttctagagcctttgcttct 256  Q
    | ||||||||||| |||||||||||| |||| ||||||    
T  3203239 acagaacctcctcattctcttctagaaccttggcttct 3203276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 3209013 - 3209249
Alignment:
Q  19 gccattccattttgcaggtggagagggcattccctcgtcagaaaaggaaggatgggagagggatattcctgtgtccaggattccaattatgatcccttta 118  Q
    ||||||||||||||||||||| || ||||| ||||| ||||||||||||||||| ||||||| |||||||||||| | ||||||||||||||||||||||    
T  3209013 gccattccattttgcaggtggtgaaggcatcccctcatcagaaaaggaaggatgtgagagggttattcctgtgtcgacgattccaattatgatcccttta 3209112  T
Q  119 ccgagattggaatttatccataatccttgactctgttgcaaccccaagaagcttggtgtgtgagttgtatgtaatgaaaggatcttttctggtcgaattg 218  Q
    ||  |||||||||||  ||| ||  ||||| | ||||| ||||||||||||||||  ||||||||||| |||||||||   || || ||  | ||| |||    
T  3209113 ccttgattggaatttccccacaagtcttgattttgttgtaaccccaagaagcttgaagtgtgagttgtgtgtaatgaatacattttctccagccgagttg 3209212  T
Q  219 atagaacctcctccttctcttctagagcctttgcttc 255  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  3209213 atagaacctcctcattctcttctagagccttggcttc 3209249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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