View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5394_high_2 (Length: 484)
Name: NF5394_high_2
Description: NF5394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5394_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 4263798 - 4263461
Alignment:
| Q |
1 |
tgttgtcaggcacgttatgattccattgaattatgtgattttcggtgtcattgtccgtgtcgtgtccatgtttgtatccgtgcttaatagttagttgcta |
100 |
Q |
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| T |
4263798 |
tgttgtcaggcacgttatgattccattgaattatgtgattttcggtgtcattgtccgtgtcgtgtccatgtttgtatccgtgcttaatagttagttgcta |
4263699 |
T |
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| Q |
101 |
ataagtagttagattagatggttaatattcgataagctctatatgtagagtatcatttattcatttcaatgttttaaaagcccaactaaatcagccggtg |
200 |
Q |
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| T |
4263698 |
ataagtagttagattagatggttaatattcgataagctctatatgtagagtatcatttattcatttcaatgttttaaaagcccaactaaatcagccggtg |
4263599 |
T |
|
| Q |
201 |
caaccgattgaattgagaactgaccagttcatgtttgtcggttggtttgatcccgggtacattgtagtttggttgaacctgtgaagcacggacgctcttt |
300 |
Q |
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| T |
4263598 |
caaccgattgaattgagaactgaccagttcatgtttgtcggttggtttgatcccgggtacattgtagtttggttgaacctgtgaagcacggacgctcttt |
4263499 |
T |
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| Q |
301 |
tggttgaactgaggttgaattgcagttggttcaattgg |
338 |
Q |
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| T |
4263498 |
tggttgaactgaggttgaattgcagttggttcaattgg |
4263461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 389 - 450
Target Start/End: Complemental strand, 4263410 - 4263351
Alignment:
| Q |
389 |
gtcatccagttcaagcatatggttgaatcaattttaccatgatacataggtctcacaggttc |
450 |
Q |
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| T |
4263410 |
gtcatccagttcaagcat--ggttgaatcaattttaccatgatacataggtctcacaggttc |
4263351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 17593788 - 17593824
Alignment:
| Q |
56 |
cgtgtcgtgtccatgtttgtatccgtgcttaatagtt |
92 |
Q |
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| T |
17593788 |
cgtgtcgtgtccgtgtttgtatccgtgcttcatagtt |
17593824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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