View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5394_high_7 (Length: 295)
Name: NF5394_high_7
Description: NF5394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5394_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 14 - 277
Target Start/End: Complemental strand, 1695619 - 1695356
Alignment:
| Q |
14 |
atatctcatctaatgagagactccaagattccaagtcaatatcgtcagaccaaaccaaatgggttagcatgttaacaagacaataaagttgcaaataatt |
113 |
Q |
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| T |
1695619 |
atatctcatctaatgagagactccaagatcccaagtcaatatcatcagaccaatccaaatgggttagcatgttaacaagacaataaagttgcaaataatt |
1695520 |
T |
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| Q |
114 |
tcatattattgaacgatgcaaataaagaaataacataagaatataggaaagtgagaaacttacaccaagcgctcagttttcaggcggctagcatttttca |
213 |
Q |
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| T |
1695519 |
tcatattattgaacgatgcaaataaagaattaacataagaatataggaaagtgagaaacttacactaaacgctcagttttcaggcggctagcatttttca |
1695420 |
T |
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| Q |
214 |
tttttgataaacgattgattgtagcatttggatgtaatgcaactaaagatgttggtgcagtcat |
277 |
Q |
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| T |
1695419 |
tttttgataaacgattgattgtagcatttggatgtaatgcaactaaagatgttggtgcagtcat |
1695356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 143 - 263
Target Start/End: Complemental strand, 41921403 - 41921283
Alignment:
| Q |
143 |
ataacataagaatataggaaagtgagaaacttacaccaagcgctcagttttcaggcggctagcatttttcatttttgataaacgattgattgtagcattt |
242 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||| || || ||||||||||| |
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| T |
41921403 |
ataacataagaatataggaaagtgagaaacttacactgtgcgctcagttttcaagcgactagcatttttcatttttgataaatgactgtttgtagcattt |
41921304 |
T |
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| Q |
243 |
ggatgtaatgcaactaaagat |
263 |
Q |
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| T |
41921303 |
ggatgaaatgcaactaaagat |
41921283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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