View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5394_high_8 (Length: 278)

Name: NF5394_high_8
Description: NF5394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5394_high_8
NF5394_high_8
[»] chr2 (8 HSPs)
chr2 (89-235)||(32565380-32565526)
chr2 (89-235)||(32806565-32806711)
chr2 (89-235)||(32815002-32815148)
chr2 (89-235)||(32309309-32309455)
chr2 (118-235)||(32799640-32799757)
chr2 (94-235)||(28215617-28215758)
chr2 (94-235)||(28220466-28220604)
chr2 (89-132)||(32305344-32305387)
[»] chr6 (2 HSPs)
chr6 (89-235)||(301455-301601)
chr6 (10-46)||(301644-301680)


Alignment Details
Target: chr2 (Bit Score: 139; Significance: 9e-73; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 89 - 235
Target Start/End: Original strand, 32565380 - 32565526
Alignment:
Q  89 ttacgtggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacaaacaatatc 188  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32565380 ttacctggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatc 32565479  T
Q  189 ttcagcttgagggcaagaatccctatagaaattatattgaagattgg 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  32565480 ttcagcttgagggcaagaatccctatagaaattatattgaagattgg 32565526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 89 - 235
Target Start/End: Original strand, 32806565 - 32806711
Alignment:
Q  89 ttacgtggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacaaacaatatc 188  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32806565 ttacctggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatc 32806664  T
Q  189 ttcagcttgagggcaagaatccctatagaaattatattgaagattgg 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  32806665 ttcagcttgagggcaagaatccctatagaaattatattgaagattgg 32806711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 89 - 235
Target Start/End: Original strand, 32815002 - 32815148
Alignment:
Q  89 ttacgtggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacaaacaatatc 188  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32815002 ttacctggatgaagcaatcatgaaagaaaagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatc 32815101  T
Q  189 ttcagcttgagggcaagaatccctatagaaattatattgaagattgg 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  32815102 ttcagcttgagggcaagaatccctatagaaattatattgaagattgg 32815148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 89 - 235
Target Start/End: Complemental strand, 32309455 - 32309309
Alignment:
Q  89 ttacgtggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacaaacaatatc 188  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  32309455 ttacctggatgaagcaatcatgaaagaaaagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacattatc 32309356  T
Q  189 ttcagcttgagggcaagaatccctatagaaattatattgaagattgg 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  32309355 ttcagcttgagggcaagaatccctatagaaattatattgaagattgg 32309309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 118 - 235
Target Start/End: Original strand, 32799640 - 32799757
Alignment:
Q  118 agacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacaaacaatatcttcagcttgagggcaagaatccctataga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32799640 agacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatcttcagcttgagggcaagaatccctataga 32799739  T
Q  218 aattatattgaagattgg 235  Q
    ||||||||||||||||||    
T  32799740 aattatattgaagattgg 32799757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 94 - 235
Target Start/End: Original strand, 28215617 - 28215758
Alignment:
Q  94 tggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacaaacaatatcttcag 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||  ||||    
T  28215617 tggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaacagcggaacgaacaatattctcag 28215716  T
Q  194 cttgagggcaagaatccctatagaaattatattgaagattgg 235  Q
    ||| ||||||||||||| |||||||||||||| |||||||||    
T  28215717 cttcagggcaagaatccttatagaaattatatcgaagattgg 28215758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 94 - 235
Target Start/End: Complemental strand, 28220604 - 28220466
Alignment:
Q  94 tggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacaaacaatatcttcag 193  Q
    ||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||| ||||||||  ||||    
T  28220604 tggatgaagcaatcatgaaa--agagacgaagaagagaaggtgca-ggtctctatgattaaagtaaatatcggtaacagcggaacgaacaatattctcag 28220508  T
Q  194 cttgagggcaagaatccctatagaaattatattgaagattgg 235  Q
    |||||||||||||| || ||||||||||||||||||||||||    
T  28220507 cttgagggcaagaaaccttatagaaattatattgaagattgg 28220466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 132
Target Start/End: Complemental strand, 32305387 - 32305344
Alignment:
Q  89 ttacgtggatgaagcaatcatgaaagaagagacgaagaagagaa 132  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  32305387 ttacctggatgaagcaatcatgaaagaagagacgaagaagagaa 32305344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 89 - 235
Target Start/End: Complemental strand, 301601 - 301455
Alignment:
Q  89 ttacgtggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacaaacaatatc 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||    
T  301601 ttacgtggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaggtagatatcggtaacagcggaaggaacaatatc 301502  T
Q  189 ttcagcttgagggcaagaatccctatagaaattatattgaagattgg 235  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||    
T  301501 ttcagcttgagggctagaatccctatagaaattatattgaagattgg 301455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 301680 - 301644
Alignment:
Q  10 cacagaactgaagaacaataaagactccattttcaca 46  Q
    |||| ||||||||||||||||||||||||||||||||    
T  301680 cacataactgaagaacaataaagactccattttcaca 301644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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