View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5394_low_1 (Length: 637)
Name: NF5394_low_1
Description: NF5394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5394_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 181 - 628
Target Start/End: Complemental strand, 6264721 - 6264274
Alignment:
| Q |
181 |
tttgtaggaataaatctgattgatacatagcatgaaacggtatgaagttattttctttatnnnnnnnnttaggacagaaaaatactatgaataacggaga |
280 |
Q |
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| T |
6264721 |
tttgtaggaatgaatctcattgatacatagcatgtaatggtatgaagttattttcttttttaaaaaaattaggacagaaaaatactatgaataacgggga |
6264622 |
T |
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| Q |
281 |
cattaatgattattttacaactatcttaaatgaaatttaaacatgacacttgagtttacaaagtcaaacttttatcgctcaactaccacagcttggcaaa |
380 |
Q |
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| T |
6264621 |
cattaatgattattttacaactatcttaaatgaaatttaaacatgacgcttgagtttacaaagtcaaacttttatcgctcaactaccacagcttggcgaa |
6264522 |
T |
|
| Q |
381 |
aaatatcattataatgaaaaatattttactgttacttataatttttattgaattatcacaacagatcctaacagtgagagcaggagctctagtgtgtata |
480 |
Q |
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| T |
6264521 |
aaatatcattataatgaaaaatattttactgttacttataatttttattgaattatcacaacagatcctaacagtgagagcaggagctctagtgtgtata |
6264422 |
T |
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| Q |
481 |
ttccaagagatgaagctttcggccacttgaaatcctcagactttcttgtttatggacttaagtctgtttctcaagatgtaattccattgatacaatctgt |
580 |
Q |
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| T |
6264421 |
ttccaagagatgaagctttcggccacttgaaatcctcagactttcttgtttatggacttaagtctgtttctcaagatgtaattccattgatacaatctgt |
6264322 |
T |
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| Q |
581 |
atttgacacgaacttcacaccgaatgaatttgatagctttgatgatgt |
628 |
Q |
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| T |
6264321 |
atttgacacgaacttcacaccgaatgaatttgatagctttgatgatgt |
6264274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 6264882 - 6264798
Alignment:
| Q |
19 |
ctagcagccttccttatcctcgtaggggaagaacgggaagaaaaccaaccgcaacaggttaggctttgttcttggattaatgtct |
103 |
Q |
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| T |
6264882 |
ctagcagccttccttatcctcgtaggggaagaacgggcagaaaaccaacagcaacaggttcgactatgttcttggattcatgtct |
6264798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 480 - 533
Target Start/End: Complemental strand, 6332929 - 6332876
Alignment:
| Q |
480 |
attccaagagatgaagctttcggccacttgaaatcctcagactttcttgtttat |
533 |
Q |
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| T |
6332929 |
attccaagagatgaatcatttggccacttgaagtcttcagactttcttgtttat |
6332876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 440 - 538
Target Start/End: Complemental strand, 42694161 - 42694063
Alignment:
| Q |
440 |
aacagatcctaacagtgagagcaggagctctagtgtgtatattccaagagatgaagctttcggccacttgaaatcctcagactttcttgtttatggact |
538 |
Q |
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| T |
42694161 |
aacagatcctaaaagtgagagtaggagtgattttgtgtatcttccaagagatgaagcttttggtcacttgaaatcatcagattttcttacttatggact |
42694063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 42694333 - 42694296
Alignment:
| Q |
29 |
tccttatcctcgtaggggaagaacgggaagaaaaccaa |
66 |
Q |
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| T |
42694333 |
tccttatcctcgtcggggaagaacgggcagaaaaccaa |
42694296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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