View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5394_low_4 (Length: 380)
Name: NF5394_low_4
Description: NF5394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5394_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 41894842 - 41895214
Alignment:
| Q |
1 |
gtcaccttgttgacaatacatacaacgctatcaataaagtttgaaaatgaagtttaccttatcaaccggatatcatgaaatgactctaccattgtttgac |
100 |
Q |
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| T |
41894842 |
gtcaccttgttgacaatacatacaacgctatcaataaagtttgaaaatgaagtttaccttatcaaccggatatcatgaaatgactctaccattgtttgac |
41894941 |
T |
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| Q |
101 |
tagaatcattcgaatttgattccagtttgaagataatgatgtaaaaatataaatattactggcttcaactaaagaagaatggnnnnnnnaattttgacct |
200 |
Q |
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| T |
41894942 |
tagaatcattcgaatttgattccagtttgaagataatgatgtaaaaatataaatattactggcttcaactaaagaagaatggtttttttaattttgacct |
41895041 |
T |
|
| Q |
201 |
taaacagtatataagagca-cccatttgaactattttaaagnnnnnnnnctatattgacctggataatataccccaccaacaagatggaaagtcccacgt |
299 |
Q |
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| T |
41895042 |
taaacagtatataagagcaccccatttgaattattttaaagaaaaaaaactatattgacctggataatataccccaccaacaagatggaaagtcccacgt |
41895141 |
T |
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| Q |
300 |
atatatatttctgttgacaaagacaaaagagaagatggccctttccatttccaattccatatactcctatgct |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
41895142 |
atatatatttctgttgacaaagacaaaagagaagatggccctttccatttccaaatccatatactcctatgct |
41895214 |
T |
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