View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5394_low_5 (Length: 349)
Name: NF5394_low_5
Description: NF5394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5394_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 3e-76; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 192 - 344
Target Start/End: Complemental strand, 4704542 - 4704390
Alignment:
| Q |
192 |
tccctaacaacatagctcatagatttccaaggatccttaacccaacaatgtttaggtatagctgctcttatatcacctaatgtaaaaggtggtggtgcac |
291 |
Q |
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| T |
4704542 |
tccctaacaacatagctcatagatttccaaggatccttaacccaacaatgtttaggtatagctgctcttatatcacctaatgtaaaaggtggtggtgcac |
4704443 |
T |
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| Q |
292 |
cagggtcaaaattaggaaattcctgaactacccctcctccaccctttgcttct |
344 |
Q |
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| T |
4704442 |
cagggtcaaaatttggaaattcctgaactacccctcctccacccttttcttct |
4704390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 4704716 - 4704604
Alignment:
| Q |
18 |
gaaccaatagtaactgaactgaaaatcaatattactagtatttgtaattaccaatcatgaccaagaacaaagagagcccaaaacatggttccttgagcag |
117 |
Q |
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| T |
4704716 |
gaaccaatagtaattgaactgaaaatcaatattactagtatttgtaattaccaatcatgaccaagaacaaagagagcccaaaacatggttccttgagcag |
4704617 |
T |
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| Q |
118 |
cccaataaagtgg |
130 |
Q |
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| T |
4704616 |
cccaataaagtgg |
4704604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 4704898 - 4704848
Alignment:
| Q |
53 |
tagtatttgtaattaccaatcatgaccaagaacaaagagagcccaaaacat |
103 |
Q |
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| T |
4704898 |
tagtatttgtaacaaccaatcatgaccaagaataaagatagctcaaaacat |
4704848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 65 - 127
Target Start/End: Original strand, 25268991 - 25269053
Alignment:
| Q |
65 |
ttaccaatcatgaccaagaacaaagagagcccaaaacatggttccttgagcagcccaataaag |
127 |
Q |
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| T |
25268991 |
ttaccaatcatgaccaagaacaaaaagagcccaaaacatggttccttgagcagcccaataaag |
25269053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 301
Target Start/End: Original strand, 25269126 - 25269227
Alignment:
| Q |
200 |
aacatagctcatagatttccaaggatccttaacccaacaatgtttaggtatagctgctcttatatcacctaatgtaaaaggtggtggtgcaccagggtca |
299 |
Q |
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| T |
25269126 |
aacataactcattgacttccatgaatctttcacccaacaatgctttggaattgctgctcttatatcagccaatgaaaacggtggtggtgaaccagggtca |
25269225 |
T |
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| Q |
300 |
aa |
301 |
Q |
| |
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|| |
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| T |
25269226 |
aa |
25269227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 25840825 - 25840877
Alignment:
| Q |
62 |
taattaccaatcatgaccaagaacaaagagagcccaaaacatggttccttgag |
114 |
Q |
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||||||||||||||| ||||||||||| |||||||||||||| || ||||||| |
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| T |
25840825 |
taattaccaatcatgtccaagaacaaaaagagcccaaaacattgtcccttgag |
25840877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 126
Target Start/End: Original strand, 30186938 - 30186999
Alignment:
| Q |
65 |
ttaccaatcatgaccaagaacaaagagagcccaaaacatggttccttgagcagcccaataaa |
126 |
Q |
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|||||||||||| ||||||||||| | ||||||||||| ||||||||| || |||||||| |
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| T |
30186938 |
ttaccaatcatgtccaagaacaaaaattgcccaaaacattgttccttgaagaggccaataaa |
30186999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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