View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5394_low_8 (Length: 293)
Name: NF5394_low_8
Description: NF5394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5394_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 10358874 - 10359080
Alignment:
| Q |
17 |
cagagacaataagccacaccgtgtccaggaatgaatctagtattttcttcggtgtacacgagtttcgttctgaagcctgaaacaaatataatgttggtgt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10358874 |
cagagacaataagccacaccgtgtccaggaatgaatctagtattttcttcggtgtacacgagtttcgttctgaagcctgaaacaaatataatgttggtgt |
10358973 |
T |
|
| Q |
117 |
cgatgtcctaaacatttaagtgagttagaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaagaaatattctacttacattcg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
10358974 |
cgatgtcctaaacatttaagtgagttagaatgttgatatcatagtcagagttcttcattgaaatgtaaattacgaaaaagaaatattgtacttacattcg |
10359073 |
T |
|
| Q |
217 |
cgaaaga |
223 |
Q |
| |
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||||||| |
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| T |
10359074 |
cgaaaga |
10359080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 9995675 - 9995470
Alignment:
| Q |
17 |
cagagacaataagccacaccgtgtccaggaatgaatctagtattttcttcggtgtacacgagtttcgttctgaagcctgaaacaaatataatgttggtgt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
9995675 |
cagagacaataagccacaccgtgtccaggaatgaatctagtattttcttcggtgtatacgagttttgttctgaagcctgaaacaaatataatgttggtgt |
9995576 |
T |
|
| Q |
117 |
cgatgtcctaaacatttaagtgagttagaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaagaaatattctacttacattcg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9995575 |
cgatgtcctaaacatttaagtgagttagaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaagaaatattgtacttacattca |
9995476 |
T |
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| Q |
217 |
cgaaag |
222 |
Q |
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|||||| |
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| T |
9995475 |
cgaaag |
9995470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 17 - 177
Target Start/End: Complemental strand, 10131348 - 10131188
Alignment:
| Q |
17 |
cagagacaataagccacaccgtgtccaggaatgaatctagtattttcttcggtgtacacgagtttcgttctgaagcctgaaacaaatataatgttggtgt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10131348 |
cagagacaataagccacaccgtgtccaggaatgaatctagtattttcttcggtgtacacgagtttcgttatgaagcctgaaacaaatataatgttggtgt |
10131249 |
T |
|
| Q |
117 |
cgatgtcctaaacatttaagtgagttagaatgttgatatcatagtcagagttcttcattga |
177 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10131248 |
cgatgttctaaacatttaagtgagttagaatgttgatatcatagtcagagttcttcattga |
10131188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 48388038 - 48388230
Alignment:
| Q |
17 |
cagagacaataagccacaccgtgtccaggaatgaatctagtattttcttcggtgtacac--gagtttcgttctgaagcctgaaacaaatataatgttggt |
114 |
Q |
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||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||| ||||||||||||||||||||| | ||||| |
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| T |
48388038 |
cagagacgataagccacaccgtgtccaggaatgaatctagcattttcttcagtgtacacatgagtttcattctgaagcctgaaacaaataagcttttggt |
48388137 |
T |
|
| Q |
115 |
gtcgatgtcctaaacatttaagtgagttagaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaagaaatattctacttac |
211 |
Q |
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||| | ||| ||||||| ||||| ||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||| ||||||| |
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| T |
48388138 |
gtcaagttccaaaacatt----tgagtgagaatgttgatatcataatcagagttcttcattgaaatgtgaattgcaaaaaagaaatattgtacttac |
48388230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 143 - 223
Target Start/End: Complemental strand, 10105585 - 10105505
Alignment:
| Q |
143 |
agaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaagaaatattctacttacattcgcgaaaga |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
10105585 |
agaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaagaaatattgtacttacattcgcgaaaga |
10105505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 143 - 223
Target Start/End: Complemental strand, 10216733 - 10216653
Alignment:
| Q |
143 |
agaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaagaaatattctacttacattcgcgaaaga |
223 |
Q |
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| T |
10216733 |
agaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaagaaatattgtacttacattcgcgaaaga |
10216653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 143 - 223
Target Start/End: Complemental strand, 10226345 - 10226265
Alignment:
| Q |
143 |
agaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaagaaatattctacttacattcgcgaaaga |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||| |
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| T |
10226345 |
agaatgttgatatcatagtcagagttcttcattgaaatgtaaattgtgaaaaagaaatgttgtacttacattcgcgaaaga |
10226265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 143 - 223
Target Start/End: Complemental strand, 10220252 - 10220171
Alignment:
| Q |
143 |
agaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcga-aaaagaaatattctacttacattcgcgaaaga |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||| |
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| T |
10220252 |
agaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaaagaaatattgtactgacattcgcgaaaga |
10220171 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 9e-36; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 143 - 223
Target Start/End: Complemental strand, 26796204 - 26796124
Alignment:
| Q |
143 |
agaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaagaaatattctacttacattcgcgaaaga |
223 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26796204 |
agaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaagaaatattgtacttacattcgcgaaaga |
26796124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 143 - 223
Target Start/End: Complemental strand, 26799722 - 26799642
Alignment:
| Q |
143 |
agaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaagaaatattctacttacattcgcgaaaga |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
26799722 |
agaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaagaaatattgtacttacattcgcgaaaga |
26799642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 143 - 223
Target Start/End: Complemental strand, 26807272 - 26807191
Alignment:
| Q |
143 |
agaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcga-aaaagaaatattctacttacattcgcgaaaga |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||| |
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| T |
26807272 |
agaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaaagaaatattgtactgacattcgcgaaaga |
26807191 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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