View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5395-Insertion-3 (Length: 562)
Name: NF5395-Insertion-3
Description: NF5395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5395-Insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 305
Target Start/End: Complemental strand, 36544338 - 36544026
Alignment:
| Q |
8 |
gtttgaaggtggggtttgtgagaggaatttgcatttgtgtggtgaaatggcgaagggggagagttgccatggattggagagaggttgaaggaaggaaagg |
107 |
Q |
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| T |
36544338 |
gtttgaaggtggggtttgtgagaggaatttgcatttgtgtggtgaaatggcgaagggggagaattgccatggattgg--agaggttgaaggaaggaaagg |
36544241 |
T |
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| Q |
108 |
gtttaagagtgggttttgcgaactgtctttgagacaagacagtgatgaa----------------tgtgttgtaggggaagataaggttaatgttttctc |
191 |
Q |
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| T |
36544240 |
gtttaagagtgggttttgcgaactgtctttgagacaagacagtgatgaatgattgatggttgtgttgtgttgtaggggaagataaggttaatgttttctc |
36544141 |
T |
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| Q |
192 |
ttttaaattgttttttaaacaaaatatatttatttgt-cnnnnnnnnnnntgaatattttggaaaacttatcatttccaaattttaacaaaattatattt |
290 |
Q |
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| T |
36544140 |
ttttaaattgttttttaaacaaaatatatttatttgtaaaaaaaaaaaaatgaatattttggaaaacttatcatttccaaattttaacaaaattatattt |
36544041 |
T |
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| Q |
291 |
ttaatcacattatgg |
305 |
Q |
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| T |
36544040 |
ttaatcacattatgg |
36544026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 442 - 562
Target Start/End: Complemental strand, 36543970 - 36543850
Alignment:
| Q |
442 |
gctattaggattagttttattctaatatatatattttaaaaaataaggaggtaacacataaaaacgtgtgtttttgctaatcaattcgcatatgaaaagt |
541 |
Q |
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| T |
36543970 |
gctattaggattagttttattctaatatatatatttttaaaaataaggaggtaacacataaaaacgtgtgtttttgctaatcaattcgcatatgaaaagt |
36543871 |
T |
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| Q |
542 |
gttcatggcaacttatgtgat |
562 |
Q |
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| T |
36543870 |
gttcatggcgacttatgtgat |
36543850 |
T |
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