View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5395-Insertion-4 (Length: 474)
Name: NF5395-Insertion-4
Description: NF5395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5395-Insertion-4 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 45 - 260
Target Start/End: Complemental strand, 185890 - 185675
Alignment:
| Q |
45 |
cacttcaacaaccataaaacagctgtataaacaaaagcacagcatgcatgcactctcaattctctatttttcctatcttgataattaatttccttgtttt |
144 |
Q |
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| T |
185890 |
cacttcaacaaccataaaacagctgtataaacaaaagcacagcatgcatgcactctcaattctctatttttcctatcttgataattaatttccttgtttt |
185791 |
T |
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| Q |
145 |
tcatgccaccaccaatgtgttgttaatttttattgactgctcaattatcctttcccttgcttttgttgcctgcagcaatgcaatcaatcacatgcaaaag |
244 |
Q |
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| T |
185790 |
tcatgccaccaccaatgtgttgttaatttttattgactgctcaattatcctttcccttgcttttgttgcctgcagcaatgcaatcaatcacatgcaaaag |
185691 |
T |
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| Q |
245 |
ttgcctcaattgttgc |
260 |
Q |
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|||||||||||||||| |
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| T |
185690 |
ttgcctcaattgttgc |
185675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 290 - 474
Target Start/End: Complemental strand, 185645 - 185461
Alignment:
| Q |
290 |
gtgcacaatttggaaaaggtttagatatttgtatgagaaaacaaacctctttttgccaatcagttaatgcagttacaatagataatataatgacatttag |
389 |
Q |
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| T |
185645 |
gtgcacaatttggaaaaggtttagatatttgtatgagaaaacaaacctctttttgccaatcagttaatgcagttacaatagataatataatgacatttag |
185546 |
T |
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| Q |
390 |
aacagatcctgatagagttcccatccacaatccctttgcatttaattttagatgaaaaccaaataacaaacccacaggaattccc |
474 |
Q |
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| T |
185545 |
aacagatcctgatagagttcccatccacaatccctttgcatttaattttagatgaaaaccaaataacaaacccacaggaattccc |
185461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 327 - 431
Target Start/End: Original strand, 31751433 - 31751537
Alignment:
| Q |
327 |
aaaacaaacctctttttgccaatcagttaatgcagttacaatagataatataatgacatttagaacagatcctgatagagttcccatccacaatcccttt |
426 |
Q |
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|||| |||||||||| |||||||| ||||| ||||||| || || ||| || ||||| |||| |||||||| ||| ||||||||||| | |||||| |
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| T |
31751433 |
aaaaaaaacctctttctgccaatctgttaacattgttacaacagctagtatgattacattaagaatagatcctgttagtgttcccatccagagtcccttg |
31751532 |
T |
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| Q |
427 |
gcatt |
431 |
Q |
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||||| |
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| T |
31751533 |
gcatt |
31751537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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