View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5395-Insertion-5 (Length: 436)
Name: NF5395-Insertion-5
Description: NF5395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5395-Insertion-5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 8 - 436
Target Start/End: Complemental strand, 53597617 - 53597189
Alignment:
| Q |
8 |
tgaagatggtttcaaattaggagagaatatatattggggtagtggctctgattggacaccaacggatgctgtaaaagcttgggctgatgaagagaaatat |
107 |
Q |
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| T |
53597617 |
tgaagatggtttcaaattaggagagaatatatattggggtagtggctctgattggacaccaacggatgctgtaaaagcttgggctgatgaagagaaatat |
53597518 |
T |
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| Q |
108 |
tacacatatgtgactaattcatgtgtatctggtcaaatgtgtggacattatactcagattgtgtggaaaagtactagaagaattggttgtgcaagagttg |
207 |
Q |
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| T |
53597517 |
tacacatatgtgactaattcatgtgtatctggtcaaatgtgtggacattatactcagattgtgtggaaaagtactagaagaattggttgtgcaagagttg |
53597418 |
T |
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| Q |
208 |
tgtgtgatgatggagatgtgttcatgacttgtaactatgatcctgttggtaattatgttggagaacgaccatattaatttaattaatcatataagtatgt |
307 |
Q |
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| T |
53597417 |
tgtgtgatgatggagatgtgttcatgacttgtaactatgatcctgttggtaattatgttggagaacgaccatattaatttaattaatcatataagtatgt |
53597318 |
T |
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| Q |
308 |
atattggttatatatggtagtgtgaattcagttctttagtccttttaaactagcaatatgagtatattgtatgttggtataaattgagcaaatgtgtatg |
407 |
Q |
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| T |
53597317 |
atattggttatatatggtagtgtgaattcagttatttagtccttttaaactagcaatatgagtatattgtatgttggtataaattgagcgaatgtgtatg |
53597218 |
T |
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| Q |
408 |
gttgagatttgtgaatagttattaaattg |
436 |
Q |
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| T |
53597217 |
gttgtgacttgtgaatagttattaaattg |
53597189 |
T |
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