View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5395-Insertion-6 (Length: 405)
Name: NF5395-Insertion-6
Description: NF5395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5395-Insertion-6 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 8 - 405
Target Start/End: Complemental strand, 42159099 - 42158702
Alignment:
| Q |
8 |
tactttactttacatcttcgatcgattacataataatgcttttgtcttataattttagggtttccaaaacagcaatgacgaacgtagatgtgcattttca |
107 |
Q |
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| T |
42159099 |
tactttactttacatctttgatcgattacataataatgcttttgtcttataattttagggtttccaaaacagcaatgacgaacgtagaggtgcattttca |
42159000 |
T |
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| Q |
108 |
atcacatatcaatcaacaacaagcaactgagaacgacgaagaagttgaagttgaattgaatctgcgatacatcagcctcagagacgctgaattggtttca |
207 |
Q |
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| T |
42158999 |
atcacatatcaatcaacaacaagcaactgagaacgacgaagaagttgaagttgaattgaatctgcgatacatcagcctcagagacgctgatttggtttca |
42158900 |
T |
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| Q |
208 |
aacttcatcgcttctcatggctccgaagtaactctgcctactttcaagtctcctgaagtgaagggcttggcatacacaaccttggcggaacttttacttc |
307 |
Q |
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| T |
42158899 |
aacttcatcgcttctcatggctccgaaataactctgcctactttcaagtctcctgaagtgaagggcttggcatacacaaccttggcggaacttttacttc |
42158800 |
T |
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| Q |
308 |
ttctcaaaaaccattcaatcttagatctccttgacaatcaacgctctctactcgttaagttacttgaagatcttcaccatacatttcgttttcgtgga |
405 |
Q |
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| T |
42158799 |
ttctcaagaaccattcaatcttagatctccttgacaatcaacgctttctactcgttaagttacttgaagatcttcaccatacatttcgttttcgtgga |
42158702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 43047448 - 43047407
Alignment:
| Q |
11 |
tttactttacatcttcgatcgattacataataatgcttttgt |
52 |
Q |
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|||||||||||||| |||| |||||||| ||||||||||||| |
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| T |
43047448 |
tttactttacatctgcgattgattacattataatgcttttgt |
43047407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 43065466 - 43065507
Alignment:
| Q |
11 |
tttactttacatcttcgatcgattacataataatgcttttgt |
52 |
Q |
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|||||||||||||| |||| |||||||| ||||||||||||| |
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| T |
43065466 |
tttactttacatctgcgattgattacattataatgcttttgt |
43065507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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