View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5395-Insertion-8 (Length: 372)
Name: NF5395-Insertion-8
Description: NF5395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5395-Insertion-8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 58 - 372
Target Start/End: Original strand, 1113939 - 1114254
Alignment:
| Q |
58 |
ttgttatgtgatagaaatttcattgttgaatcattttgaagaagtttgaactgtgaacattctgtggaattgtgcacacaatcccc-caaacaaactgaa |
156 |
Q |
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| T |
1113939 |
ttgttatgtgatagaaatttcaatgttgaatcattttgaagaagtttgaactgtgaacattctgtggaattgtgcacacaatccccccaaacaaactgaa |
1114038 |
T |
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| Q |
157 |
actcaktaagtaaatcattcattcatcagtatttcattaccaatgtatcattttctcattgctagattcactcatactcatagaacccttcacagacaca |
256 |
Q |
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| T |
1114039 |
actcagtaagtaaatcattcattcatcattatttcattaccaatgtatcattttctcattgctagattcactcatactcatagaacccttcacagacaca |
1114138 |
T |
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| Q |
257 |
atactttttctcttttctctgttgtttgcaacacagatcaacataaaggtggcacctttacattgttaagtctcataaactcatgtgggttgtcccctga |
356 |
Q |
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| T |
1114139 |
atactttttctcttttctctgttgtttgcaacacagatcaacataaaggtgacacctttacattgttaagtctcataaactcatgtgggttgtcccctga |
1114238 |
T |
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| Q |
357 |
aaaagcccttaaactt |
372 |
Q |
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| T |
1114239 |
aaaagcccttaaactt |
1114254 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 371
Target Start/End: Complemental strand, 17377622 - 17377549
Alignment:
| Q |
298 |
cataaaggtggcacctttacattgttaagtctcataaactcatgtgggttgtcccctgaaaaagcccttaaact |
371 |
Q |
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| T |
17377622 |
cataaaggtgacacctttacagtgtcaaaccttgttaattcatgtgagttgtcccctgaaacagcccttaaact |
17377549 |
T |
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