View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5395-Insertion-9 (Length: 286)

Name: NF5395-Insertion-9
Description: NF5395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5395-Insertion-9
NF5395-Insertion-9
[»] chr1 (1 HSPs)
chr1 (8-286)||(12609255-12609533)


Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 8 - 286
Target Start/End: Original strand, 12609255 - 12609533
Alignment:
Q  8 agccacacacgtgcaaaaagtaagtattaagccagtgatttgcatagttaccttgtatatattgatttgatggttgataactactttcaaattttcaatt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12609255 agccacacacgtgcaaaaagtaagtattaagccagtgatttgcatagttaccttgtatatattgatttgatggttgataactactttcaaattttcaatt 12609354  T
Q  108 tgtgattagtacagagcttgaaagattttgtagtagagccaccatattgtttttctgaatttctaaggaccaccatattagtttctgagtatatagaacc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12609355 tgtgattagtacagagcttgaaagattttgtagtagagccaccatattgtttttctgaatttctaaggaccaccatattagtttctgagtatatagaacc 12609454  T
Q  208 taatttatgtttttaatagtcattcaaactaaattcacaaatgcttcatgcagtttattgaaaactaaatttactttgt 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12609455 taatttatgtttttaatagtcattcaaactaaattcacaaatgcttcatgcagtttattgaaaactaaatttactttgt 12609533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University