View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5395_high_7 (Length: 235)
Name: NF5395_high_7
Description: NF5395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5395_high_7 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 235
Target Start/End: Original strand, 3585150 - 3585362
Alignment:
| Q |
14 |
attagcacatggcagctcaacctaagtcatcattgcattataacactaatttctttctttctccaatcaaaattaaaacattgaaaactaattaaaataa |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3585150 |
attagcacatggcagctcaacctaagtcatcattgcattataacactaatttctttctttctccaatcaaaattaaaacattgaaaactaattaaaata- |
3585248 |
T |
|
| Q |
114 |
gtactatatagtactactaaccttgaggatgatcattgtctaagctcattttgcaaataacttgagaggactttgaaaccttggaacttgaagggtaaca |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3585249 |
--------tagtactactaaccttgaggatgatcattgtttaagctcattttgcaaataacttgagaggactttgaaaccttggaacttgaagggtaaca |
3585340 |
T |
|
| Q |
214 |
agaaacatggtgagaattgatt |
235 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
3585341 |
agaaacatggtgagaattgatt |
3585362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University