View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5395_low_1 (Length: 786)
Name: NF5395_low_1
Description: NF5395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5395_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 330 - 768
Target Start/End: Original strand, 7904466 - 7904903
Alignment:
| Q |
330 |
gcaaccactcataccgcttaagttagtgggagattgaagtgagtatgagacaatgagaataacaactacctttcttttgagcgagtaggtcattatacaa |
429 |
Q |
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|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7904466 |
gcaaccactcatac-gcttaagttagtgggagattgaagcgagtatgagacaatgagaataacaactacctttcttttgagcgagtaggtcattatacaa |
7904564 |
T |
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| Q |
430 |
gtcatggtcctcgcacggggtgtgcctcgcgtacatggcagaagcaaaaacccctagaaacacataacccatgcgcctcgcgcatgagagcagctctctt |
529 |
Q |
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| T |
7904565 |
gtcatggtcctcgcacggggtgtgcctcgcgtacatggcagaagcaaaaacccctagaaacacataacccatgcgcctcgcgcatgagagcagctctctt |
7904664 |
T |
|
| Q |
530 |
gcaataacaaatacataacaaaactgaattgcttnnnnnnnntcaccatttttatccaaattttcaataggtacatttatttgatgatgctaatggagaa |
629 |
Q |
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| T |
7904665 |
gcaataacaaatacataacaaaactgaattgcttaaaaaaaatcaccatttttatccaaattttcaataggtacatttatttgatgatgctaatggagaa |
7904764 |
T |
|
| Q |
630 |
caaagtatgaaatacagctaagctaactaaaccaagatcctagggtcatttcctaatgactagaaatatacacaaatttcactctagagatgaatcctaa |
729 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7904765 |
caaagtatgaaatacagctaagctaagtaaaccaagatcctagggtcatttcctaatgactagaaatatacacaaatttcactctagagatgaatcctaa |
7904864 |
T |
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| Q |
730 |
atgaaaaagtaactcatacacttcactttctatgctgag |
768 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |
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| T |
7904865 |
atgagaaagtaactcatacacttcactttctatgctgag |
7904903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 257; E-Value: 1e-142
Query Start/End: Original strand, 11 - 331
Target Start/End: Original strand, 7904116 - 7904436
Alignment:
| Q |
11 |
atcatcatgttttagaatactagtactacagagaagaaaaaagcacgacttttcaatctacacgacaaaataaacttttttgaacaagacaaaatacacc |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
7904116 |
atcatcatgttttagaatactagtactacagagaagaaaaaagcacgacttttcaatctacacgacaaaataaacttttttgaacaagacaaaatacccc |
7904215 |
T |
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| Q |
111 |
ttttttgactagttggaaattaggaaaccctattcacataattaatgnnnnnnnnnnnnnnnngagaggacataataaatgaatttatgaagtaaagaat |
210 |
Q |
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| T |
7904216 |
ttttttgactagttggaaattaggaaaccctattcacataattaatgttttttattttgttttgagaggacataataaatgaacttatgaagtaaaaaat |
7904315 |
T |
|
| Q |
211 |
ttctccattgaacataatatatatgttttattttgaaataataatcattttaaaattaaaatttgattcgaggtggatctagagaaacagtcgatgttat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7904316 |
ttctccattgaacataatatatatgttttattttgaaataataatcattttaaaattaaaatttgattcgaggtggatctagagaaacagtcgatgttat |
7904415 |
T |
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| Q |
311 |
tgaggctcgatggagggcggc |
331 |
Q |
| |
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||| ||||||||||||||||| |
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| T |
7904416 |
tgaagctcgatggagggcggc |
7904436 |
T |
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