View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5395_low_4 (Length: 302)
Name: NF5395_low_4
Description: NF5395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5395_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 13 - 293
Target Start/End: Complemental strand, 5917143 - 5916862
Alignment:
| Q |
13 |
atcaagtatgaaa-tggattctgaattgctgcaagctgatggattaggaatcagattcgcaagctgattaatcaccatatgatcagcttccgacgtatat |
111 |
Q |
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| T |
5917143 |
atcaagtatgaaaatcgattctgaattgctgcaagctgatggattaggaatcagattcgcaagctgattaatcaccatatgatcagcttccgacgtatat |
5917044 |
T |
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| Q |
112 |
agcataataaagatttgtaagctttctttcaacaaccagttggaccaaaccactttacaaacagtcccatgatgctgatcagtggaaggaatttaagttg |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
5917043 |
agcataataaagatttgtaagctttctttcaacaaccagttggaccaaaccactttacaaacaatcccatgatgctgatcagtgaaaggaatttaagttg |
5916944 |
T |
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| Q |
212 |
ggaagattagtttacttttcttacccttaccaggaaaagtgtaagttcaaagacaagacattaatgcatgtttccctaccta |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5916943 |
ggaagattagtttacttttcttacccttaccaggaaaagtgtaagttcaaagacaagacattaatgcatgtttccctaccta |
5916862 |
T |
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