View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5395_low_6 (Length: 242)

Name: NF5395_low_6
Description: NF5395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5395_low_6
NF5395_low_6
[»] chr1 (18 HSPs)
chr1 (14-228)||(24449751-24449965)
chr1 (16-228)||(41920500-41920717)
chr1 (41-228)||(5459234-5459421)
chr1 (16-228)||(5389243-5389454)
chr1 (20-228)||(46692640-46692848)
chr1 (16-200)||(31585608-31585793)
chr1 (16-153)||(30685800-30685937)
chr1 (63-205)||(6764225-6764367)
chr1 (16-206)||(24658977-24659166)
chr1 (17-157)||(24684370-24684510)
chr1 (33-206)||(7857718-7857891)
chr1 (16-228)||(27031662-27031873)
chr1 (16-228)||(46814288-46814500)
chr1 (167-228)||(6804739-6804800)
chr1 (176-228)||(30685745-30685797)
chr1 (190-228)||(24684312-24684350)
chr1 (16-88)||(27102239-27102310)
chr1 (192-228)||(31584858-31584894)
[»] chr3 (19 HSPs)
chr3 (13-228)||(45163900-45164115)
chr3 (14-228)||(2392327-2392541)
chr3 (16-228)||(47235746-47235958)
chr3 (16-228)||(20611831-20612042)
chr3 (65-228)||(2394091-2394254)
chr3 (16-214)||(17551005-17551198)
chr3 (31-228)||(34475577-34475772)
chr3 (31-228)||(31482947-31483143)
chr3 (16-228)||(53247948-53248161)
chr3 (16-228)||(43012423-43012635)
chr3 (16-230)||(19176550-19176766)
chr3 (16-228)||(9583876-9584086)
chr3 (33-206)||(23328193-23328366)
chr3 (129-228)||(30352262-30352359)
chr3 (22-228)||(40023393-40023599)
chr3 (16-205)||(45398844-45399033)
chr3 (14-47)||(2394255-2394288)
chr3 (49-169)||(21342617-21342735)
chr3 (16-80)||(38488843-38488907)
[»] chr8 (18 HSPs)
chr8 (16-228)||(24995215-24995428)
chr8 (16-228)||(20138474-20138687)
chr8 (16-228)||(9519547-9519760)
chr8 (16-228)||(31207183-31207395)
chr8 (16-228)||(37986679-37986891)
chr8 (16-228)||(34388828-34389038)
chr8 (16-225)||(32066119-32066328)
chr8 (33-204)||(12898120-12898290)
chr8 (16-228)||(41893223-41893433)
chr8 (16-228)||(16457296-16457494)
chr8 (67-168)||(22773598-22773699)
chr8 (17-178)||(36630886-36631047)
chr8 (168-228)||(22773815-22773875)
chr8 (20-205)||(38577633-38577819)
chr8 (16-204)||(15821224-15821412)
chr8 (187-228)||(36631043-36631084)
chr8 (160-228)||(35821432-35821500)
chr8 (16-82)||(17656970-17657035)
[»] chr7 (20 HSPs)
chr7 (16-225)||(5860112-5860321)
chr7 (16-228)||(44353384-44353597)
chr7 (16-228)||(47325706-47325918)
chr7 (16-228)||(37795037-37795249)
chr7 (16-224)||(38306309-38306517)
chr7 (16-228)||(10244230-10244442)
chr7 (101-228)||(31971955-31972082)
chr7 (16-228)||(3419476-3419689)
chr7 (16-196)||(33435157-33435337)
chr7 (16-228)||(3867164-3867376)
chr7 (31-228)||(25160878-25161071)
chr7 (16-228)||(41089570-41089781)
chr7 (16-206)||(34390010-34390200)
chr7 (124-228)||(3419217-3419321)
chr7 (130-226)||(6585043-6585140)
chr7 (14-206)||(35745665-35745862)
chr7 (161-228)||(40726326-40726392)
chr7 (16-89)||(6584957-6585031)
chr7 (33-202)||(8745218-8745388)
chr7 (14-87)||(1320840-1320913)
[»] chr4 (11 HSPs)
chr4 (13-228)||(8255072-8255287)
chr4 (13-228)||(8268490-8268705)
chr4 (16-228)||(30964489-30964697)
chr4 (16-228)||(30167386-30167597)
chr4 (20-195)||(4305777-4305951)
chr4 (132-228)||(8705965-8706061)
chr4 (164-228)||(20464786-20464850)
chr4 (14-228)||(35341161-35341373)
chr4 (55-205)||(31050505-31050654)
chr4 (55-206)||(2825871-2826020)
chr4 (16-82)||(25753220-25753285)
[»] chr2 (15 HSPs)
chr2 (16-219)||(39338695-39338898)
chr2 (22-228)||(10524155-10524360)
chr2 (35-228)||(17116700-17116894)
chr2 (16-217)||(387221-387423)
chr2 (16-228)||(7874339-7874550)
chr2 (55-228)||(14106343-14106515)
chr2 (128-204)||(7460835-7460912)
chr2 (33-228)||(5254321-5254511)
chr2 (19-218)||(16952215-16952413)
chr2 (19-218)||(17022880-17023078)
chr2 (19-218)||(17060186-17060384)
chr2 (16-74)||(14405246-14405305)
chr2 (14-88)||(13337320-13337393)
chr2 (130-206)||(14405359-14405437)
chr2 (14-82)||(1269529-1269596)
[»] chr5 (9 HSPs)
chr5 (16-228)||(34378146-34378358)
chr5 (20-228)||(18593295-18593503)
chr5 (23-221)||(698416-698614)
chr5 (16-228)||(29087529-29087739)
chr5 (41-228)||(18313464-18313650)
chr5 (96-228)||(7161837-7161969)
chr5 (16-89)||(7162276-7162350)
chr5 (16-88)||(8297516-8297587)
chr5 (16-88)||(14302392-14302463)
[»] scaffold0343 (1 HSPs)
scaffold0343 (16-228)||(5753-5966)
[»] chr6 (4 HSPs)
chr6 (16-228)||(3117541-3117753)
chr6 (103-227)||(10541967-10542091)
chr6 (113-228)||(14663222-14663337)
chr6 (20-88)||(20701765-20701832)
[»] scaffold0068 (1 HSPs)
scaffold0068 (22-228)||(35596-35799)
[»] scaffold0200 (1 HSPs)
scaffold0200 (14-82)||(19429-19496)
[»] scaffold0172 (1 HSPs)
scaffold0172 (164-228)||(19113-19174)
[»] scaffold0119 (1 HSPs)
scaffold0119 (14-82)||(42106-42173)


Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 14 - 228
Target Start/End: Complemental strand, 24449965 - 24449751
Alignment:
Q  14 gaagtcagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcag 113  Q
    |||||||||||||||||||||||||| ||||||| ||||| ||||||||||| |||||||||||||||| |||||||||||||| | ||||||||||| |    
T  24449965 gaagtcagttctttgtcttaagttggtttttgggatttgtgttgtgctcttttggtggatcggaggtcgcgaggtttgtgatagttgcatgatccttcgg 24449866  T
Q  114 ttagatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggt 213  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24449865 ttaggtgctcttcgaaatgcggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggt 24449766  T
Q  214 gaataccgtgtttac 228  Q
    | |||||||||||||    
T  24449765 ggataccgtgtttac 24449751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 41920500 - 41920717
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatcct-----t 110  Q
    ||||||||||||| || ||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||     |    
T  41920500 agtcagttctttgactcaagttggattttgggctttgtgttgtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgcatgatcctaacctt 41920599  T
Q  111 cagttagatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggt 210  Q
    ||||||| ||||||||   |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  41920600 cagttaggtgctcttcatcatgtggctcagcttgggtgttggggtcttggagttttattttgagggtgttttttgtgggtgagtagtgacgataggcggt 41920699  T
Q  211 ggtgaataccgtgtttac 228  Q
    ||||||||||||||||||    
T  41920700 ggtgaataccgtgtttac 41920717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 5459234 - 5459421
Alignment:
Q  41 ttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagttagatgctcttcgaaatgtggctcag 140  Q
    ||||||||||||| |||||||||||| |||| |||||||| | |||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||    
T  5459234 ttttgggctttgtgttgtgctctttcagtggttcggaggttgcgaggtttgtgatagctgcatgatccttcagttaggtgctctttgaaatgtggctcag 5459333  T
Q  141 cttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtgaataccgtgtttac 228  Q
    ||||||||||||||||| | ||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  5459334 cttgggtgttggggtctggaagttttattttgatggtgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttac 5459421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 5389454 - 5389243
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagtt 115  Q
    ||||||||||||| || ||||| | ||||||||||||| ||||||||||||||||| |||||||||| |||||||||| |||||||||| |||||| |||    
T  5389454 agtcagttctttgactcaagtttgtttttgggctttgtgttgtgctctttcggtggttcggaggtcgcgaggtttgtgttagctacatggtccttcggtt 5389355  T
Q  116 agatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtga 215  Q
    |  |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||  ||||||||||||||||||||||||||     
T  5389354 aagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgagggtgtt-cttgtaagtgagtagtgacgatgggcggtggtgg 5389256  T
Q  216 ataccgtgtttac 228  Q
    |||||||||||||    
T  5389255 ataccgtgtttac 5389243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 20 - 228
Target Start/End: Complemental strand, 46692848 - 46692640
Alignment:
Q  20 agttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagttagat 119  Q
    ||||||||| || ||||||| ||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||| ||| ||||| | ||||  |    
T  46692848 agttctttggctcaagttggtttttgggctttgtgttgtgctctttcggtggttcggaggtcgcgaggtttgtgatagctgcattatcctccggttaagt 46692749  T
Q  120 gctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtgaatac 219  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||| ||||||||||||||||||||||||||||||||  |||     
T  46692748 gctcttcgaaatgtggctcagcttgggtgttggggtctggaagttttatttggagggtgttctttgtgggtgagtagtgacgatgggcggtggttgatat 46692649  T
Q  220 cgtgtttac 228  Q
    |||||||||    
T  46692648 cgtgtttac 46692640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 31585793 - 31585608
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagtt 115  Q
    ||||||||||||| || ||||||| ||||||||||||| ||||||| ||||||||| |||||||||| ||||||||||||||||  |||||||||  |||    
T  31585793 agtcagttctttgactcaagttggtttttgggctttgtgttgtgctatttcggtgggtcggaggtcgcgaggtttgtgatagctgtatgatcctttggtt 31585694  T
Q  116 agatgctcttcgaaatgtggctcagcttgggtgtt-ggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgac 200  Q
    || ||||||||||||||||||| |||||||||||| |||||||  ||||||||||||||||||||| |||||||||||||||||||    
T  31585693 aggtgctcttcgaaatgtggctaagcttgggtgttgggggtctgagagttttattttgagggtgttctttgtgggtgagtagtgac 31585608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 153
Target Start/End: Complemental strand, 30685937 - 30685800
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagtt 115  Q
    ||||||||||||| || ||||||| ||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||  |||    
T  30685937 agtcagttctttgactcaagttggcttttgggctttgtgttgtgctctttcggtggttcggaggtcgcgaggtttgtgatagctgcatgatcctttggtt 30685838  T
Q  116 agatgctcttcgaaatgtggctcagcttgggtgttggg 153  Q
    || ||||| | || ||||||||||||||||||||||||    
T  30685837 aggtgctccttgatatgtggctcagcttgggtgttggg 30685800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 63 - 205
Target Start/End: Complemental strand, 6764367 - 6764225
Alignment:
Q  63 tttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagttagatgctcttcgaaatgtggctcagcttgggtgttggggtctaggag 162  Q
    ||||| ||| ||| ||| ||||||||||||||||||| |||| |||||| ||||| ||||||||||||||||||||| ||||| |  |||||||| ||||    
T  6764367 tttcgatggttcgaagggcgtgaggtttgtgatagctgcatggtccttcggttaggtgctcttcgaaatgtggctcaacttggatactggggtctgggag 6764268  T
Q  163 ttttattttgagggtgttatttgtgggtgagtagtgacgatgg 205  Q
    ||||||||| ||| |||| ||||||||||||||||||||||||    
T  6764267 ttttattttcaggatgttctttgtgggtgagtagtgacgatgg 6764225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 24658977 - 24659166
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggctttg-tattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagt 114  Q
    |||||| |||||| || ||||||| |||||||||||| | |||||||||||||||||||||||||||| |||| |||||  |||  |||| || ||| ||    
T  24658977 agtcagctctttggctgaagttggtttttgggctttggttttgtgctctttcggtggatcggaggtcgagagg-ttgtggaagcatcatgttcattcggt 24659075  T
Q  115 tagatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttga-gggtgttatttgtgggtgagtagtgacgatggg 206  Q
    |||| ||| |||| ||||||||||||| |||| |||   |||| ||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  24659076 tagaagcttttcg-aatgtggctcagcctgggagtt-aagtctgggagttttattttgaggggtgttatttgggggtgagtagtgacgatggg 24659166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 17 - 157
Target Start/End: Complemental strand, 24684510 - 24684370
Alignment:
Q  17 gtcagttctttgtcttaagttgggttttgggcttt-gtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagtt 115  Q
    |||||||||||| ||  |||||| ||||||||||| || |||||||||||||||||||||||||||| |||||| |||  || | ||||||||||| ||     
T  24684510 gtcagttctttgactctagttggtttttgggcttttgttttgtgctctttcggtggatcggaggtcgcgaggtt-gtggaagatgcatgatccttcggtc 24684412  T
Q  116 agatgctcttcgaaatgtggctcagcttgggtgttggggtct 157  Q
    || ||||||||||||||||||||| ||||| ||| |||||||    
T  24684411 aggtgctcttcgaaatgtggctcaacttggatgtcggggtct 24684370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 33 - 206
Target Start/End: Original strand, 7857718 - 7857891
Alignment:
Q  33 aagttgggttttgggcttt-gtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagttagatgctcttcgaaat 131  Q
    ||||||| |||||| |||| || |||||||||||||||||||||| ||||| |||||| |||  |||| | ||  | ||| |||||  ||| || |||||    
T  7857718 aagttggtttttggccttttgttttgtgctctttcggtggatcggtggtcgagaggtt-gtggaagctgcttgtccattcggttaggagctttt-gaaat 7857815  T
Q  132 gtggctcagcttgggtgttggggtctaggagttttattttga-gggtgttatttgtgggtgagtagtgacgatggg 206  Q
    ||||||||| ||||||||||  |||| ||||||||||||||| ||||||| | || |||||||||||| |||||||    
T  7857816 gtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctatgggggtgagtagtggcgatggg 7857891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 27031873 - 27031662
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggcttt-gtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagt 114  Q
    |||||| |||||| || ||||||| ||| ||| ||| || |||||||||||||||||||||||||| | |||| |||||  |||| |||| || ||| ||    
T  27031873 agtcagctctttggctcaagttggttttagggattttgttttgtgctctttcggtggatcggaggttgagagg-ttgtggaagctgcatgttcattcggt 27031775  T
Q  115 tagatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttga-gggtgttatttgtgggtgagtagtgacgatgggcggtggt 213  Q
    ||   ||| |||| |||||||||||| |||| |||||  |||| ||||||||||||||| ||||||| | || ||||||||||||||||| ||| ||  |    
T  27031774 taagagcttttcg-aatgtggctcagtttggatgttgaagtctgggagttttattttgaggggtgttctctg-gggtgagtagtgacgataggccgttat 27031677  T
Q  214 gaataccgtgtttac 228  Q
    | |||| ||||||||    
T  27031676 ggatactgtgtttac 27031662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 46814500 - 46814288
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggcttt-gtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagt 114  Q
    |||||| | |||| || ||||||| |||| |||||| || ||||||||||||||||||||||| |||| ||||||   || |||| || | || |||  |    
T  46814500 agtcagctttttggctcaagttggttttttggcttttgttttgtgctctttcggtggatcggatgtcgagaggttgcaga-agctgcaagttcattcgat 46814402  T
Q  115 tagatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgaggg-tgttatttgtgggtgagtagtgacgatgggcggtggt 213  Q
    |||  ||| |||||| |||||||| || |||||||||  || | |||||||||||| ||||| |||||||||  |||||||||||||||||| |||| ||    
T  46814401 taggagcttttcgaa-tgtggctcggcgtgggtgttgaagtatgggagttttatttcgaggggtgttatttggaggtgagtagtgacgatggacggttgt 46814303  T
Q  214 gaataccgtgtttac 228  Q
    | |||| ||||||||    
T  46814302 ggatactgtgtttac 46814288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 228
Target Start/End: Original strand, 6804739 - 6804800
Alignment:
Q  167 attttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtgaataccgtgtttac 228  Q
    ||||| |||||||| |||||||||||| |||||||||||||||||||| |||| || |||||    
T  6804739 attttcagggtgttctttgtgggtgaggagtgacgatgggcggtggtggatactgtatttac 6804800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 30685797 - 30685745
Alignment:
Q  176 gtgttatttgtgggtgagtagtgacgatgggcggtggtgaataccgtgtttac 228  Q
    ||||| |||||||||| ||||||| |||||||||||||| |||||||||||||    
T  30685797 gtgttctttgtgggtgtgtagtgaagatgggcggtggtggataccgtgtttac 30685745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 228
Target Start/End: Complemental strand, 24684350 - 24684312
Alignment:
Q  190 tgagtagtgacgatgggcggtggtgaataccgtgtttac 228  Q
    ||||||||||||||||||||||||| ||| |||||||||    
T  24684350 tgagtagtgacgatgggcggtggtggatatcgtgtttac 24684312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 27102239 - 27102310
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggt 88  Q
    |||||||||||||  | ||||| ||||||||||||| ||  ||  |||||||||||||||||||||| |||||    
T  27102239 agtcagttctttggatcaagtttggttttgggctttttacggtt-tctttcggtggatcggaggtcgagaggt 27102310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 31584894 - 31584858
Alignment:
Q  192 agtagtgacgatgggcggtggtgaataccgtgtttac 228  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  31584894 agtagtgacgatgagcggtggtggataccgtgtttac 31584858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 164; Significance: 9e-88; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 13 - 228
Target Start/End: Original strand, 45163900 - 45164115
Alignment:
Q  13 agaagtcagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttca 112  Q
    ||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||  || ||||||||||||| |||||||||||     
T  45163900 agaagtcagttttttgtcttaagttggtttttgggctttgtgttgtgctctttcggtggatcggaggtcacgaagtttgtgatagctgcatgatccttcg 45163999  T
Q  113 gttagatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtgg 212  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||     
T  45164000 gttaggtgctcttcgaaatgtggcttagcttgggtgttggggtctaggagttttattttgagggtgttatttgtaggtgattagtgacgatgggcggtga 45164099  T
Q  213 tgaataccgtgtttac 228  Q
    ||||||||||||||||    
T  45164100 tgaataccgtgtttac 45164115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 14 - 228
Target Start/End: Complemental strand, 2392541 - 2392327
Alignment:
Q  14 gaagtcagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcag 113  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||| |    
T  2392541 gaagtcagttctttgtcttaagttggtttttgggctttgtgttgtgctctttcggtggatcggaggtcgcgaggtttgtgctagctgcatgatccttcgg 2392442  T
Q  114 ttagatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggt 213  Q
    ||||   |||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  2392441 ttaggatctcttcaaaatgtggctcagcttgggtgttggggtctaggagttttattttgtaggtgttatttgtgggtgagtagtgacgatgggcggtggt 2392342  T
Q  214 gaataccgtgtttac 228  Q
    | |||||||||||||    
T  2392341 ggataccgtgtttac 2392327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 47235746 - 47235958
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagtt 115  Q
    |||| |||||||| |||||||||| ||||||||||||| || ||||||||||||||||| ||||||| |||||||||||||||| ||||||||||| |||    
T  47235746 agtcggttctttgacttaagttggtttttgggctttgtgttttgctctttcggtggatcagaggtcgcgaggtttgtgatagctgcatgatccttcggtt 47235845  T
Q  116 agatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtga 215  Q
    || ||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||     
T  47235846 aggtgctcttcgaaatgtggttcagcttgggtgttggggtctgcgagttttattttgagggtgttctttgtgggtgagtagtgacgatggacggtggtgg 47235945  T
Q  216 ataccgtgtttac 228  Q
    |||||||||||||    
T  47235946 ataccgtgtttac 47235958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 20611831 - 20612042
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagtt 115  Q
    ||||||||||||| |||||||||| ||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||  |||||||||| |||    
T  20611831 agtcagttctttgacttaagttggtttttgggctttgcgttgtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgaatgatccttcggtt 20611930  T
Q  116 agatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtga 215  Q
    || |||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||     
T  20611931 aggtgctcttcgaaatgtgactcagcttgggtgtt-gggtctaggagttttattctgagggtgttctttgtgggtgagtagtgacgatgggcgatggtgg 20612029  T
Q  216 ataccgtgtttac 228  Q
    |||| ||||||||    
T  20612030 atactgtgtttac 20612042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 65 - 228
Target Start/End: Complemental strand, 2394254 - 2394091
Alignment:
Q  65 tcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagttagatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagtt 164  Q
    |||||||||||||||||| |||||||||| ||||| ||||||||||| |||||   |||||| |||||||||||||||||||||||||||||||||||||    
T  2394254 tcggtggatcggaggtcgcgaggtttgtgctagctgcatgatccttcggttaggatctcttcaaaatgtggctcagcttgggtgttggggtctaggagtt 2394155  T
Q  165 ttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtgaataccgtgtttac 228  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2394154 ttattttgtaggtgttatttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttac 2394091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 17551005 - 17551198
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagtt 115  Q
    ||||||||||||| || ||||||| ||||||||||||| ||||||||||||| || ||||||||||| |||||||||||||||| ||||||      |||    
T  17551005 agtcagttctttgactcaagttggtttttgggctttgtgttgtgctctttcgatgcatcggaggtcgcgaggtttgtgatagctgcatgatg-----gtt 17551099  T
Q  116 agatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtg 214  Q
    || |||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  17551100 aggtgctcttcgaaatgtggctcagtttgggtgttggggtctgagagttttattttgagggtgttctttgtcggtgagtagtgacgatgggcggtggtg 17551198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 31 - 228
Target Start/End: Complemental strand, 34475772 - 34475577
Alignment:
Q  31 ttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagttagatgctcttcgaaa 130  Q
    ||||||||  ||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||  |||||||||| ||||| ||||||||||||    
T  34475772 ttaagttgatttttgggctttgtgttgtgctctttcggtggattggaggtcgcgaggtttgtgatagctgtatgatccttcggttaggtgctcttcgaaa 34475673  T
Q  131 tgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtgaataccgtgtttac 228  Q
    |||| |||||||| ||||||||||| |  ||||||  |||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  34475672 tgtgactcagcttaggtgttggggtatgagagttt--ttttaagggtgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttac 34475577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 31 - 228
Target Start/End: Original strand, 31482947 - 31483143
Alignment:
Q  31 ttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagttagatgctcttcgaaa 130  Q
    ||||||||  ||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  31482947 ttaagttgatttttgggctttgtgttgtgctctttcggtggattggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaa 31483046  T
Q  131 tgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtgaataccgtgtttac 228  Q
    ||||||||||||| ||||||||||| |  ||||||| |||| |||||||| ||||||||| |||||||||||||  | |||||| ||||| |||||||    
T  31483047 tgtggctcagcttaggtgttggggtttgagagtttt-ttttaagggtgttctttgtgggttagtagtgacgatgaacagtggtggataccatgtttac 31483143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 53247948 - 53248161
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagtt 115  Q
    ||||| |||||||  | ||||||| |||| |  ||||| ||||||||||||||||||| |||||||| |||||||||||||| |  |||||||||| |||    
T  53247948 agtcaattctttgattcaagttggtttttagattttgtgttgtgctctttcggtggattggaggtcgcgaggtttgtgatagttgtatgatccttcggtt 53248047  T
Q  116 agatgctcttcgaaatgtggctcagcttgggtgttggggtctaggag-ttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtg 214  Q
    |  |||||||||||||||||||||| ||||||||||||||||  ||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  53248048 atgtgctcttcgaaatgtggctcagtttgggtgttggggtctgagagtttttattttgagagtgttctttgtgggtgagtagtgacgatgggcggtggtg 53248147  T
Q  215 aataccgtgtttac 228  Q
      ||||||||||||    
T  53248148 gttaccgtgtttac 53248161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 43012423 - 43012635
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggcttt-gtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagt 114  Q
    ||||||||||||| || ||||||| ||||| ||||| || |||||||||||||||| ||| ||||||| |||||| |||  || | ||||||| ||| ||    
T  43012423 agtcagttctttgactcaagttggtttttgagcttttgttttgtgctctttcggtgaatcagaggtcgcgaggtt-gtggaagttgcatgatcgttcggt 43012521  T
Q  115 tagatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtg 214  Q
     || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||  ||||||||||| |||||| ||| ||||    
T  43012522 caggtgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttaatttgagggtgttctttggaggtgagtagtggcgatggacgggggtg 43012621  T
Q  215 aataccgtgtttac 228  Q
     |||||||||||||    
T  43012622 gataccgtgtttac 43012635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 19176550 - 19176766
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggctttgtatt-gtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatcctt--ca 112  Q
    ||||||||||||| || ||||||| |||||||||||  ||| ||||||||| ||||||||||||||||  ||||| |||  |||| ||||||||||  |     
T  19176550 agtcagttctttgactcaagttggtttttgggcttttgatttgtgctcttttggtggatcggaggtcgcaaggtt-gtggaagctgcatgatccttttcg 19176648  T
Q  113 gttagatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtgg 212  Q
    || || ||||||||| ||||||||||||||||||||| ||||||| || ||||||||||||||||||| |||  |||||||||||||||||||  |||||    
T  19176649 gtcaggtgctcttcgtaatgtggctcagcttgggtgtcggggtctgggtgttttattttgagggtgttctttaggggtgagtagtgacgatggatggtgg 19176748  T
Q  213 tgaataccgtgtttactg 230  Q
    || |||| ||||||||||    
T  19176749 tggatactgtgtttactg 19176766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 9584086 - 9583876
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggcttt-gtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagt 114  Q
    |||||||||||||||| ||| ||| ||||||||||| || ||||| |||||||||||||||||||| | |||||| |||| ||   || |||||||| ||    
T  9584086 agtcagttctttgtctcaagatggtttttgggcttttgttttgtgatctttcggtggatcggaggttgcgaggtt-gtga-agtcgcacgatccttcggt 9583989  T
Q  115 tagatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtg 214  Q
     ||  |||||||||| |||||||| |||||||| ||||||||| ||||||||||||||||| |||| ||||  |||||||||||||||| ||||||||||    
T  9583988 caggcgctcttcgaattgtggctctgcttgggttttggggtctgggagttttattttgaggatgttctttg-cggtgagtagtgacgataggcggtggtg 9583890  T
Q  215 aataccgtgtttac 228  Q
     ||| |||||||||    
T  9583889 gatatcgtgtttac 9583876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 33 - 206
Target Start/End: Complemental strand, 23328366 - 23328193
Alignment:
Q  33 aagttgggttttgggcttt-gtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagttagatgctcttcgaaat 131  Q
    ||||||| ||||| ||||| || |||||||||||||||||||||||||||| |||||| |||  |||| | || || ||| |||||  ||| |||||| |    
T  23328366 aagttggtttttgagcttttgttttgtgctctttcggtggatcggaggtcgagaggtt-gtggaagctccttgttcattcggttaggagcttttcgaa-t 23328269  T
Q  132 gtggctcagcttgggtgttggggtctaggagttttattttgag-ggtgttatttgtgggtgagtagtgacgatggg 206  Q
    ||||||||||||||||||||  |||| |||||||||||||||| |||||| |||| ||||||||||||||||||||    
T  23328268 gtggctcagcttgggtgttgaagtctgggagttttattttgagtggtgttctttgggggtgagtagtgacgatggg 23328193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 129 - 228
Target Start/End: Complemental strand, 30352359 - 30352262
Alignment:
Q  129 aatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtgaataccgtgtttac 228  Q
    ||||||||||||||||||||||||||||| |||||||| |||  |||||||| ||||||| ||||||||||||||||| ||||||| |||||||||||||    
T  30352359 aatgtggctcagcttgggtgttggggtctcggagtttttttt--agggtgttctttgtggatgagtagtgacgatgggtggtggtggataccgtgtttac 30352262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 228
Target Start/End: Complemental strand, 40023599 - 40023393
Alignment:
Q  22 ttctttgtcttaagttgggttttgggcttt-gtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagttagatg 120  Q
    ||||||| |||||||||| ||||||||||| || |||||||||||||||||||| |||| || |||||| |||  |||| |||| || ||| |||||  |    
T  40023599 ttctttggcttaagttggtttttgggcttttgttttgtgctctttcggtggatcagaggacgggaggtt-gtggaagctgcatgttcattcggttaggag 40023501  T
Q  121 ctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttga-gggtgttatttgtgggtgagtagtgacgatgggcggtggtgaatac 219  Q
    || |||||| |||||||||||| ||||||||  |||| ||||||||||||||| ||| ||| |||  || ||||||||||||||||  ||| ||| ||||    
T  40023500 cttttcgaa-tgtggctcagctagggtgttgtagtctgggagttttattttgaggggcgttcttttgggatgagtagtgacgatggatggttgtggatac 40023402  T
Q  220 cgtgtttac 228  Q
    |||||||||    
T  40023401 cgtgtttac 40023393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 45398844 - 45399033
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggcttt-gtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagt 114  Q
    |||||| ||||||  ||||||||| ||||||||||| || || |||||||||| |||||||||||||| |||| |||||  |||| |||| || ||| ||    
T  45398844 agtcagctctttgatttaagttggtttttgggcttttgttttatgctctttcgatggatcggaggtcgagagg-ttgtggaagctgcatgttcattcggt 45398942  T
Q  115 tagatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttg-agggtgttatttgtgggtgagtagtgacgatgg 205  Q
    ||   ||| |||| |||||||| || ||| |||||||  || | |||||| |||||||  |||||||  ||| |||||||||||||||||||    
T  45398943 tatgagcttttcg-aatgtggcgcaacttaggtgttgaagtttgggagttctattttgtggggtgttcgttgggggtgagtagtgacgatgg 45399033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 2394288 - 2394255
Alignment:
Q  14 gaagtcagttctttgtcttaagttgggttttggg 47  Q
    |||||||||||||||||||||||||| |||||||    
T  2394288 gaagtcagttctttgtcttaagttggtttttggg 2394255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 169
Target Start/End: Original strand, 21342617 - 21342735
Alignment:
Q  49 tttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagttagatgctcttcgaaatgtggctcagcttgggtg 148  Q
    ||||| ||||||||||||| |||||| ||||||| |||| |||||  |||| | || || ||| |||||| ||| |||| ||||||||||  ||||||||    
T  21342617 tttgttttgtgctctttcgatggatcagaggtcgagagg-ttgtggaagctgcttgttcattcggttagaagcttttcg-aatgtggctcgacttgggtg 21342714  T
Q  149 ttggggtctaggagttttatt 169  Q
    |||  ||||  ||||||||||    
T  21342715 ttgaagtctgagagttttatt 21342735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 38488843 - 38488907
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggt 80  Q
    ||||||| |||||| | ||||| |||||||||||||||   ||| |||||||||||| |||||||    
T  38488843 agtcagtgctttgtttcaagtttggttttgggctttgttaggtgttctttcggtggaccggaggt 38488907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 146; Significance: 5e-77; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 24995428 - 24995215
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagtt 115  Q
    ||||||||||||| || ||||||| ||||||||||||| |||||||||||| |||| || ||||||| |||||||||||||||| ||||||||||| |||    
T  24995428 agtcagttctttgactcaagttggtttttgggctttgtgttgtgctctttcagtgggtcagaggtcgcgaggtttgtgatagctgcatgatccttcggtt 24995329  T
Q  116 agatgctcttcgaaatgtggctcagcttgggtgtt-ggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtg 214  Q
    || ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  24995328 aggtgctcttcgaaatatggctcagcttgggtgttgggggtctaggagttttattttgagggtgttctttgtgcgtgagtagtgacgatgggcggtggtg 24995229  T
Q  215 aataccgtgtttac 228  Q
     |||||||||||||    
T  24995228 gataccgtgtttac 24995215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 20138474 - 20138687
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagtt 115  Q
    ||||||||||||| |||| ||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||    
T  20138474 agtcagttctttgacttatgttggtttttgggctttgtgttgtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgcatgatccttcggtt 20138573  T
Q  116 agatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagtttta-ttttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtg 214  Q
    || |||||||||||||||| | | |||||||||||||||||| ||||||||| ||||||||||||| ||||| |||||||||||||||||| ||||||||    
T  20138574 aggtgctcttcgaaatgtgacccggcttgggtgttggggtctgggagttttatttttgagggtgttctttgtaggtgagtagtgacgatggacggtggtg 20138673  T
Q  215 aataccgtgtttac 228  Q
     |||||||||||||    
T  20138674 gataccgtgtttac 20138687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 9519547 - 9519760
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagtt 115  Q
    ||||||||||||| || ||||||| ||||||||||||| ||||||||||||||||| |||||||| | || ||||||||||||| ||||||| ||| |||    
T  9519547 agtcagttctttgactcaagttggtttttgggctttgtgttgtgctctttcggtgggtcggaggttgcgaagtttgtgatagctgcatgatcattcggtt 9519646  T
Q  116 agatgctcttcgaaatgtggctcagcttgggtgtt-ggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtg 214  Q
    || ||||||||||||| |||||||||||||||||| |||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9519647 aggtgctcttcgaaatatggctcagcttgggtgttgggggtctgagagttttattttgagggtgttctttgtgggtgagtagtgacgatgggcggtggtg 9519746  T
Q  215 aataccgtgtttac 228  Q
     |||||||||||||    
T  9519747 gataccgtgtttac 9519760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 31207395 - 31207183
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagtt 115  Q
    ||||||||||||| || ||||||| ||||||| ||||| ||||||| |||||||||||||||||||| ||||||||||||||||  |||| ||||| |||    
T  31207395 agtcagttctttgactcaagttggattttgggatttgtgttgtgctttttcggtggatcggaggtcgcgaggtttgtgatagctgaatgacccttcggtt 31207296  T
Q  116 agatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtga 215  Q
    || |||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||     
T  31207295 aggtgctcttcgaaatgtggctcagcttgggtgttggagtatgggagttttattttgagggtgttctttgtgggtgagtagtgacgatgggcgatggtgg 31207196  T
Q  216 ataccgtgtttac 228  Q
    |||| ||||||||    
T  31207195 atactgtgtttac 31207183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 37986891 - 37986679
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagtt 115  Q
    ||||||||||||| || ||||||| ||||| ||||||| ||||||||||||||||| |||||||||| |||||||||||||||| | ||||||||| |||    
T  37986891 agtcagttctttgactcaagttggtttttgtgctttgtgttgtgctctttcggtggttcggaggtcgcgaggtttgtgatagctgcctgatccttcggtt 37986792  T
Q  116 agatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtga 215  Q
    || ||||||||||||||||||||||||||||||||  ||||| |||||||||||| ||||||||| |||||||||||||| |||||||||| ||||||      
T  37986791 aggtgctcttcgaaatgtggctcagcttgggtgtttcggtctgggagttttatttggagggtgttctttgtgggtgagtaatgacgatgggtggtggtag 37986692  T
Q  216 ataccgtgtttac 228  Q
    |||||||||||||    
T  37986691 ataccgtgtttac 37986679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 34389038 - 34388828
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagtt 115  Q
    ||||||||||||| || ||||||| ||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||  |||||||||||||    
T  34389038 agtcagttctttgactcaagttggtttttgggctttgtgttgtgctatttcggtggatcgtaggtcgtgaggtttgtgatagctag-tgatccttcagtt 34388940  T
Q  116 agatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtga 215  Q
    || || |||||   |||||||||||||||||||||||||| |  ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||     
T  34388939 aggtgttcttcatcatgtggctcagcttgggtgttggggtatgagagttttattttgagggtgttctttgtgggtgagtagtgacgataggcggtggtgg 34388840  T
Q  216 ataccgtgtttac 228  Q
    ||| |||||||||    
T  34388839 ata-cgtgtttac 34388828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 32066328 - 32066119
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagtt 115  Q
    |||||| |||||| ||  |||||| ||||||||||||| ||||||||||||||||| || ||||| | |||||||||||||||| ||||||| ||| |||    
T  32066328 agtcagctctttgactccagttggtttttgggctttgtgttgtgctctttcggtggttcagaggttgcgaggtttgtgatagctgcatgatcattcggtt 32066229  T
Q  116 agatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtga 215  Q
    |||||||||| ||||||||| |||||||||||||||||||||  ||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||     
T  32066228 agatgctctttgaaatgtggttcagcttgggtgttggggtctgagagttttatttggagggtgttctttgtgagtgagtagtgacgatgggcggtggtgg 32066129  T
Q  216 ataccgtgtt 225  Q
    |||| |||||    
T  32066128 atacagtgtt 32066119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 33 - 204
Target Start/End: Complemental strand, 12898290 - 12898120
Alignment:
Q  33 aagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagttagatgctcttcgaaatg 132  Q
    ||||||| ||| ||||||||| ||||||||||||| ||| |||||||||| |||||||||||||||| | ||||||||| ||||| ||||||||||||||    
T  12898290 aagttggttttggggctttgtgttgtgctctttcgatggttcggaggtcgcgaggtttgtgatagctgc-tgatccttcggttaggtgctcttcgaaatg 12898192  T
Q  133 tggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatg 204  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||    
T  12898191 tggctcagcttgggtgttggggtcttagagttttattttgagggtgttctttgtgggtgagtagtgacgatg 12898120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 41893433 - 41893223
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagtt 115  Q
    |||||||||||||||| ||||||  ||||||||||||| ||||||||||| ||||| |  |||||||  ||||||||||||||| |||||||||||  |     
T  41893433 agtcagttctttgtctcaagttgt-ttttgggctttgtgttgtgctcttttggtggttaagaggtcgcaaggtttgtgatagctgcatgatccttctat- 41893336  T
Q  116 agatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtga 215  Q
    || | ||||||||||||||||||||||||||||||| ||||| |||||| |||||| |||||||| |||||||||||||||||||||||| ||||||||     
T  41893335 aggtactcttcgaaatgtggctcagcttgggtgttgaggtctgggagttctattttcagggtgttctttgtgggtgagtagtgacgatggtcggtggtgg 41893236  T
Q  216 ataccgtgtttac 228  Q
    |||||||||||||    
T  41893235 ataccgtgtttac 41893223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 16457494 - 16457296
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagtt 115  Q
    ||||||||||||| || ||||||| |||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||||| ||||||| |   |||    
T  16457494 agtcagttctttgactcaagttggtttttaggctttgtgttgtgctctttcggtggttcggatgtcgtgaggtttgtgatagctgcatgatcttgtggtt 16457395  T
Q  116 agatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtga 215  Q
    || ||||||| ||||||||||||||||||              ||||||||||||| |||||| | ||| |||||||||||||||||||| ||||||||     
T  16457394 aggtgctctttgaaatgtggctcagcttg--------------ggagttttattttcagggtggtctttatgggtgagtagtgacgatggacggtggtgg 16457309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 67 - 168
Target Start/End: Original strand, 22773598 - 22773699
Alignment:
Q  67 ggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagttagatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagtttt 166  Q
    ||||||| |||||||  ||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||| ||||||||    
T  22773598 ggtggattggaggtcacgaggtttgtgatatctacatgatccttctgttaggtgctcttcgaaatgtggctcagtttgggtgttggggtctgggagtttt 22773697  T
Q  167 at 168  Q
    ||    
T  22773698 at 22773699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 178
Target Start/End: Original strand, 36630886 - 36631047
Alignment:
Q  17 gtcagttctttgtcttaagttgggttttgggcttt-gtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagtt 115  Q
    |||||||||||| ||  |||| | ||||||||||| || ||||||||||||| |||||||||||||| |||||| |||  |||| ||||||||||| ||     
T  36630886 gtcagttctttgactctagtttgtttttgggcttttgttttgtgctctttcgatggatcggaggtcgcgaggtt-gtgggagctgcatgatccttcggtc 36630984  T
Q  116 agatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtg 178  Q
    || ||||||||||||||||||||| ||||| ||| |||||||  | |||||| |||| |||||    
T  36630985 aggtgctcttcgaaatgtggctcaacttggatgtgggggtctgcgtgttttagtttgggggtg 36631047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 22773815 - 22773875
Alignment:
Q  168 ttttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtgaataccgtgtttac 228  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||  |||| |||||||    
T  22773815 ttttgagggtgttctttgtgggtgagtagtgacgatgggcagtggtggttaccatgtttac 22773875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 38577819 - 38577633
Alignment:
Q  20 agttctttgtcttaagttgggttttgggcttt-gtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagttaga 118  Q
    |||||||||  ||||||||| |||||| |||| || |||||||||||||||||||| ||||||| || |||||||  |||| |||| || ||| ||| |     
T  38577819 agttctttggtttaagttggtttttggacttttgttttgtgctctttcggtggatcagaggtcgaga-gtttgtggaagctgcatgttcattcggtttgg 38577721  T
Q  119 tgctcttcgaaatgtggctcagcttgggtgttggggtct-aggagttttattttgagg-gtgttatttgtgggtgagtagtgacgatgg 205  Q
     ||| |||| ||| |||| || |||||||||||  ||||  |||||||||||||| || ||||| |||| || ||||||||||||||||    
T  38577720 agcttttcg-aatatggcgcaacttgggtgttgaagtctggggagttttattttgtggagtgttctttggggatgagtagtgacgatgg 38577633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 15821412 - 15821224
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggcttt-gtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagt 114  Q
    |||||| |||||| |||| ||||| ||||||||||| || |||||||||||| ||||||| ||||||| |||| |||||  | | || || || ||  ||    
T  15821412 agtcagctctttgacttatgttggtttttgggcttttgttttgtgctctttcagtggatcagaggtcgagagg-ttgtggaaacaacttgttcatttggt 15821314  T
Q  115 tagatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagg-gtgttatttgtgggtgagtagtgacgatg 204  Q
    |||  ||| |||| |||||||||||||| || |||||  |||| ||||||||||||||||| ||||| |||  | |||||||||| |||||    
T  15821313 taggagcttttcg-aatgtggctcagctcggatgttgaagtctgggagttttattttgaggagtgttcttttggagtgagtagtggcgatg 15821224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 228
Target Start/End: Original strand, 36631043 - 36631084
Alignment:
Q  187 gggtgagtagtgacgatgggcggtggtgaataccgtgtttac 228  Q
    ||||||||||| |||||||||||||||| |||||||||||||    
T  36631043 gggtgagtagttacgatgggcggtggtggataccgtgtttac 36631084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 35821432 - 35821500
Alignment:
Q  160 gagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtgaataccgtgtttac 228  Q
    |||||||||||| |||||||| |||| || |||||||||| ||||||||||| |  |||| ||||||||    
T  35821432 gagttttattttaagggtgttctttgaggatgagtagtgatgatgggcggtgctagatactgtgtttac 35821500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 17657035 - 17656970
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcg 82  Q
    ||||||||||||| || ||||| |||||||| |||| ||| ||  ||||||||||||||||||||||    
T  17657035 agtcagttctttggctcaagtttggttttggactttttatggtt-tctttcggtggatcggaggtcg 17656970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 5860321 - 5860112
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagtt 115  Q
    ||||| ||||||| |  ||||||| ||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||    
T  5860321 agtcaattctttgacgcaagttggtttttgggctttgtgttgtgctctttcggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcagtt 5860222  T
Q  116 agatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtga 215  Q
    || ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||| ||||||||||||||||||  ||||||    
T  5860221 aggtgctcttcgaaatgtggctcagcttgggtgttggggtctgggagttttattttcagggtgttctttgtggatgagtagtgacgatgggcaatggtga 5860122  T
Q  216 ataccgtgtt 225  Q
    ||||||||||    
T  5860121 ataccgtgtt 5860112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 44353597 - 44353384
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagtt 115  Q
    ||||||||||||| |||| ||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||    
T  44353597 agtcagttctttgacttatgttggtttttgggctttgtgttgtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgcatgatccttcggtt 44353498  T
Q  116 agatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagtttta-ttttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtg 214  Q
    || |||||||||||||||| | | |||||||||||||||||| ||||||||| ||||||||||||| ||||| |||||||||||||||||| ||||||||    
T  44353497 aggtgctcttcgaaatgtgacccggcttgggtgttggggtctgggagttttatttttgagggtgttctttgtaggtgagtagtgacgatggacggtggtg 44353398  T
Q  215 aataccgtgtttac 228  Q
     |||||||||||||    
T  44353397 gataccgtgtttac 44353384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 47325918 - 47325706
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagtt 115  Q
    |||||| |||||| || ||||||| |||||||||||||  |||||||||||| |||||||||||||| ||||||||||||||||  |||||||||| |||    
T  47325918 agtcagctctttgactcaagttggtttttgggctttgtgctgtgctctttcgatggatcggaggtcgcgaggtttgtgatagctgaatgatccttcggtt 47325819  T
Q  116 agatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtga 215  Q
    || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| || ||     
T  47325818 aggtgctcttcgaaatgtggctcagcttgggtgttggggtctgggagttttattttgagggtgttctttgtgggtgagtagtgacgatgggcgatgatgg 47325719  T
Q  216 ataccgtgtttac 228  Q
    |||| ||||||||    
T  47325718 atactgtgtttac 47325706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 37795037 - 37795249
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagtt 115  Q
    |||||||||||||  | ||||||| ||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||| |||    
T  37795037 agtcagttctttgagtcaagttggtttttgggctttgtgttgtgctctttcggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggtt 37795136  T
Q  116 agatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtga 215  Q
    || ||||||||||| ||||||||||||||||||||||||| |  ||||||||||||||||||||| ||||||| | |||||| | ||||||||||||||     
T  37795137 aggtgctcttcgaactgtggctcagcttgggtgttggggtttgagagttttattttgagggtgttctttgtggttaagtagtaatgatgggcggtggtgg 37795236  T
Q  216 ataccgtgtttac 228  Q
    |||||||||||||    
T  37795237 ataccgtgtttac 37795249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 38306309 - 38306517
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagtt 115  Q
    ||||||||||||| || ||||||| ||||||||||||| ||||||||||||| ||| |||||||||| |||||||||||||||| ||||||||||| |||    
T  38306309 agtcagttctttgactcaagttggtttttgggctttgtgttgtgctctttcgatggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggtt 38306408  T
Q  116 agatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtga 215  Q
    |  |||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||     
T  38306409 aagtgctcttcgatatgtggctcagcttgggtgttggggtctgtgagttttattttgagggtgttctttgtaggtgagtagtgacgatgggtggtggtgg 38306508  T
Q  216 ataccgtgt 224  Q
    ||| |||||    
T  38306509 atatcgtgt 38306517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 10244230 - 10244442
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagtt 115  Q
    ||||||||||||| || ||||| | |||||| |||||| |||||||||||| |||| |||||||||| |||||||||||||| | ||||||||||| |||    
T  10244230 agtcagttctttgactcaagttagtttttggcctttgtgttgtgctctttcagtggttcggaggtcgcgaggtttgtgatagttgcatgatccttcggtt 10244329  T
Q  116 agatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtga 215  Q
    || ||||||| ||| |||||||||||||||||||| |||||| ||| ||||| || ||||||| | ||||||||||||||||||||||||||| |||||     
T  10244330 aggtgctctttgaattgtggctcagcttgggtgtttgggtctgggatttttagttggagggtggtctttgtgggtgagtagtgacgatgggcgatggtgg 10244429  T
Q  216 ataccgtgtttac 228  Q
    ||||| |||||||    
T  10244430 ataccatgtttac 10244442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 101 - 228
Target Start/End: Complemental strand, 31972082 - 31971955
Alignment:
Q  101 catgatccttcagttagatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgac 200  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||    
T  31972082 catgatccttcggttaggtgctcttcgaaatgtggctcagcttgggtgttggggtctgggagttttatttggagggtgttctttgtgggtgagtagtgac 31971983  T
Q  201 gatgggcggtggtgaataccgtgtttac 228  Q
    |||||||||||||  |||||||||||||    
T  31971982 gatgggcggtggttgataccgtgtttac 31971955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 3419689 - 3419476
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggctttgtat-tgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagt 114  Q
    |||||| |||||| || ||||||| ||||||||||||| | ||||||||||||||||||| ||||||   ||||||||||||||| | ||||||||| ||    
T  3419689 agtcagctctttgactcaagttggtttttgggctttgtttctgtgctctttcggtggatcagaggtcacaaggtttgtgatagctgcttgatccttcggt 3419590  T
Q  115 tagatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtg 214  Q
    ||| ||| ||||||| ||||||| | ||||||||||||||| | ||||||||||||| |||||||| |||||| ||||||||||||||||  ||||||||    
T  3419589 taggtgcgcttcgaattgtggcttaacttgggtgttggggtttgggagttttattttaagggtgttctttgtgagtgagtagtgacgatgaacggtggtg 3419490  T
Q  215 aataccgtgtttac 228  Q
     ||| | |||||||    
T  3419489 gatatcatgtttac 3419476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 33435157 - 33435337
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggc-tttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagt 114  Q
    |||||||||||||||| ||||| | || ||||| ||||| |||||||||||||||||||||||||||| |||||| |||| |||||||||||||||| ||    
T  33435157 agtcagttctttgtctcaagttcgtttgtgggcatttgttttgtgctctttcggtggatcggaggtcgcgaggtt-gtgaaagctacatgatccttcggt 33435255  T
Q  115 tagatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtag 196  Q
     || ||||||||||| ||||||||||||||| ||||| |||||  ||||||| ||||||||||||| |||| ||||||||||    
T  33435256 caggtgctcttcgaattgtggctcagcttggttgttgaggtctgagagttttcttttgagggtgttctttgggggtgagtag 33435337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 3867164 - 3867376
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggcttt-gtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagt 114  Q
    ||||||||||||| || ||||||| ||||||||||| |  |||||||||| ||||||||| ||||||| ||||||   || | || ||||||||||  ||    
T  3867164 agtcagttctttgactcaagttggtttttgggcttttgctttgtgctcttgcggtggatcagaggtcgcgaggttatggaaa-ctgcatgatcctttggt 3867262  T
Q  115 tagatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtg 214  Q
     || |||||||||| ||||||||||||||||||||||| || | | |||||||||||||||||||| |||| ||||||||||||||||||| ||||||||    
T  3867263 caggtgctcttcgatatgtggctcagcttgggtgttggagtatggaagttttattttgagggtgttctttgggggtgagtagtgacgatggacggtggtg 3867362  T
Q  215 aataccgtgtttac 228  Q
     ||| |||||||||    
T  3867363 gatatcgtgtttac 3867376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 31 - 228
Target Start/End: Original strand, 25160878 - 25161071
Alignment:
Q  31 ttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagttagatgctcttcgaaa 130  Q
    ||||||||| ||||||||| |||  |||||||||||||||||| |||||||   |||||||||||||||   ||||||||||||||| ||||||| ||||    
T  25160878 ttaagttggtttttgggctgtgt--tgtgctctttcggtggattggaggtctcaaggtttgtgatagctgtgtgatccttcagttaggtgctcttggaaa 25160975  T
Q  131 tgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtgaataccgtgtttac 228  Q
    ||||||||| ||| | |||||||||||  ||||||  |||| | |||||| ||||||||||||||||||||||||||| ||||| ||||  |||||||    
T  25160976 tgtggctcaacttagatgttggggtctgagagttt--ttttaaaggtgttctttgtgggtgagtagtgacgatgggcgttggtggatactatgtttac 25161071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 41089781 - 41089570
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggcttt-gtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagt 114  Q
    |||||| |||||| || ||||||| ||||| ||||| || ||||| |||||||||||||||||||||| |||||| |||  |||| |||||| ||||  |    
T  41089781 agtcagctctttgactcaagttggtttttgagcttttgttttgtgatctttcggtggatcggaggtcgcgaggtt-gtggaagctgcatgattcttcgtt 41089683  T
Q  115 tagatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtg 214  Q
     || ||||||||||| ||| |||||   |||||||| |||||| |||||||||||||||||||||| |||| |||| | ||||||| ||||||||||||     
T  41089682 gaggtgctcttcgaagtgtagctcaagatgggtgttagggtctgggagttttattttgagggtgttctttgcgggt-aatagtgacaatgggcggtggta 41089584  T
Q  215 aataccgtgtttac 228  Q
     |||| ||||||||    
T  41089583 gatactgtgtttac 41089570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 34390010 - 34390200
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggctttg-tattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagt 114  Q
    |||||| |||||| |||||||||| |||||||||||  | |||||||||||||||||||||||||||| |||||| |||  |||| |||| || |||  |    
T  34390010 agtcagctctttggcttaagttggtttttgggcttttattttgtgctctttcggtggatcggaggtcgagaggtt-gtggaagctgcatgttcattcgat 34390108  T
Q  115 tagatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttga-gggtgttatttgtgggtgagtagtgacgatggg 206  Q
    |||  ||| ||| |||||||||||| |||||||||||  |||| ||||||||||||||| ||||||| |||| || |||||||||||||||||    
T  34390109 taggagcttttc-aaatgtggctcaacttgggtgttgtagtctgggagttttattttgaggggtgttctttggggatgagtagtgacgatggg 34390200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 124 - 228
Target Start/End: Complemental strand, 3419321 - 3419217
Alignment:
Q  124 ttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtgaataccgtg 223  Q
    |||||| ||||||| | ||||||||||||||| | ||||||||||||| |||||||| |||||| ||||||||||| ||||  |||||||| ||| | ||    
T  3419321 ttcgaattgtggcttaacttgggtgttggggtttgggagttttattttaagggtgttttttgtgagtgagtagtgatgatgaacggtggtggatatcatg 3419222  T
Q  224 tttac 228  Q
    |||||    
T  3419221 tttac 3419217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 226
Target Start/End: Original strand, 6585043 - 6585140
Alignment:
Q  130 atgtggctcagcttgggtgttggggtctaggagttttattttga-gggtgttatttgtgggtgagtagtgacgatgggcggtggtgaataccgtgttt 226  Q
    ||||||||||||||||||||||  |||| ||||||||||||||| ||||| ||||||  ||||||||||||||||| | ||| ||| |||| ||||||    
T  6585043 atgtggctcagcttgggtgttgaagtctgggagttttattttgaggggtgctatttggaggtgagtagtgacgatgagtggttgtggatactgtgttt 6585140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 206
Target Start/End: Complemental strand, 35745862 - 35745665
Alignment:
Q  14 gaagtcagttctttgtcttaagttgggttttgggctttg--tattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttc 111  Q
    |||||||  |||||| || ||||||| |||||||||||   | ||||||||||||||||||| |||||| | |||||| |||  |||| |||| || |||    
T  35745862 gaagtcatctctttggctcaagttggtttttgggcttttgtttttgtgctctttcggtggattggaggtggagaggtt-gtggaagctgcatgttcattc 35745764  T
Q  112 agttagatgctcttcgaaat---gtggctcagcttgggtgttggggtctaggagttttattttgag-ggtgttatttgtgggtgagtagtgacgatggg 206  Q
     |||||  ||| ||||| ||   ||||||||||||||||||||  ||||    ||||||||||||| |||||| |||| ||||||||||||||||||||    
T  35745763 ggttaggagcttttcgatatatagtggctcagcttgggtgttgaagtctgactgttttattttgagaggtgttctttgggggtgagtagtgacgatggg 35745665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 40726392 - 40726326
Alignment:
Q  161 agttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtgaataccgtgtttac 228  Q
    |||||||||||||||||||| ||||||| |||||||||| ||| |||||||||| |||||||||||||    
T  40726392 agttttattttgagggtgttctttgtgg-tgagtagtgatgataggcggtggtggataccgtgtttac 40726326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 6584957 - 6585031
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggcttt-gtattgtgctctttcggtggatcggaggtcgtgaggtt 89  Q
    |||||| |||||| |||||||||| ||||||||||| || |||||||||||||||||||||||||| | ||||||    
T  6584957 agtcagctctttggcttaagttggtttttgggcttttgttttgtgctctttcggtggatcggaggttgagaggtt 6585031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 202
Target Start/End: Original strand, 8745218 - 8745388
Alignment:
Q  33 aagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagttagatgctcttcgaaatg 132  Q
    ||||| ||||||||||||| ||| ||  |||||||||||||||||||||| |||||| |||  |||| ||||||| ||||| |||  ||| |||| | ||    
T  8745218 aagtttggttttgggctttttatggtt-tctttcggtggatcggaggtcgagaggtt-gtggaagctgcatgatctttcagataggagcttttcgga-tg 8745314  T
Q  133 tggctcagcttgggtgttggggtctaggagttttattttgaggg----tgttatttgtgggtgagtagtgacga 202  Q
    ||||||||||| ||||||   | || ||||||| ||||||||||    | || |||| ||||||||||||||||    
T  8745315 tggctcagctttggtgttcaagactgggagtttaattttgaggggtgtttttctttgggggtgagtagtgacga 8745388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 1320840 - 1320913
Alignment:
Q  14 gaagtcagttctttgtcttaagttg-ggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgagg 87  Q
    ||||||||||||||| || |||||  ||||||||||||| ||| ||  |||||||||||||||||||||| ||||    
T  1320840 gaagtcagttctttggctcaagttttggttttgggctttttatggtt-tctttcggtggatcggaggtcgagagg 1320913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 144; Significance: 8e-76; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 13 - 228
Target Start/End: Original strand, 8255072 - 8255287
Alignment:
Q  13 agaagtcagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttca 112  Q
    |||||||||||||||| || ||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| | |||||| |||    
T  8255072 agaagtcagttctttgactcaagttggtttttgggctttgttttgtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgcttgatccatca 8255171  T
Q  113 gttagatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtgg 212  Q
    ||||| ||||||||| |||||||||||||||||||||| ||||||  ||||||||||||||||||||| |||||||||||||||||||||||||  ||||    
T  8255172 gttaggtgctcttcgtaatgtggctcagcttgggtgttagggtctgtgagttttattttgagggtgttctttgtgggtgagtagtgacgatgggatgtgg 8255271  T
Q  213 tgaataccgtgtttac 228  Q
    || |||| ||||||||    
T  8255272 tggatactgtgtttac 8255287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 13 - 228
Target Start/End: Original strand, 8268490 - 8268705
Alignment:
Q  13 agaagtcagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttca 112  Q
    |||||||||||||||| || ||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| | |||||| |||    
T  8268490 agaagtcagttctttgactcaagttggtttttgggctttgttttgtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgcttgatccatca 8268589  T
Q  113 gttagatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtgg 212  Q
    ||||| ||||||||| |||||||||||||||||||||| ||||||  ||||||||||||||||||||| |||||||||||||||||||||||||  ||||    
T  8268590 gttaggtgctcttcgtaatgtggctcagcttgggtgttagggtctgtgagttttattttgagggtgttctttgtgggtgagtagtgacgatgggatgtgg 8268689  T
Q  213 tgaataccgtgtttac 228  Q
    || |||| ||||||||    
T  8268690 tggatactgtgtttac 8268705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 30964489 - 30964697
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagtt 115  Q
    |||| |||||||| || ||||||| ||||||| ||||| ||||||||||| ||||| |||||||||| |||||||||||||||| ||||||| ||| |||    
T  30964489 agtccgttctttgactcaagttggtttttgggttttgtgttgtgctcttttggtggttcggaggtcgcgaggtttgtgatagctgcatgatcattcggtt 30964588  T
Q  116 agatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtga 215  Q
    || |||||||||||||||||| | ||||||||    ||  || |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  30964589 aggtgctcttcgaaatgtggccctgcttgggt----ggtactgggagttttattttgagggtgttctttgtgggtgagtagtgatgatgggcggtggtga 30964684  T
Q  216 ataccgtgtttac 228  Q
    ||| ||| |||||    
T  30964685 atatcgtatttac 30964697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 30167597 - 30167386
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagtt 115  Q
    |||| |||||||| || ||||||  ||||||| ||||| |||||||||||||||||  ||||||||| ||||||| |||||||| ||||| ||||| |||    
T  30167597 agtcggttctttgactcaagttgatttttggggtttgtgttgtgctctttcggtggtccggaggtcgcgaggtttatgatagctgcatgacccttcggtt 30167498  T
Q  116 agatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtga 215  Q
    |   ||||||||||||||||| || ||||||||||||||| | |||||||||||||||||||||| ||||||||||||| |||||| | ||||||||||     
T  30167497 aagcgctcttcgaaatgtggcccaacttgggtgttggggtatgggagttttattttgagggtgttctttgtgggtgagtggtgacg-ttggcggtggtgg 30167399  T
Q  216 ataccgtgtttac 228  Q
    |||||||||||||    
T  30167398 ataccgtgtttac 30167386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 4305777 - 4305951
Alignment:
Q  20 agttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagttagat 119  Q
    |||||||||||| ||||||| |||| |||||||| ||||||||||| |||||  | |||||||  |||||||||||| || ||||||||||| || || |    
T  4305777 agttctttgtctcaagttggtttttaggctttgtgttgtgctcttttggtggtccagaggtcgcaaggtttgtgataactgcatgatccttcggtgaggt 4305876  T
Q  120 gctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagta 195  Q
    |||||||| ||||||||||| ||||||| || |||| | ||||||||||||| |||||| | ||||||||||||||    
T  4305877 gctcttcg-aatgtggctcaacttgggtatttgggtttgggagttttattttcagggtgatctttgtgggtgagta 4305951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 132 - 228
Target Start/End: Complemental strand, 8706061 - 8705965
Alignment:
Q  132 gtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtgaataccgtgtttac 228  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||| |||||| |||| ||||||||    
T  8706061 gtggctcagcttgggtgttggggtctaagagttttattttgagggtgttctttgtgggtgggtagtgacgatgggcagtggtggatactgtgtttac 8705965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 20464786 - 20464850
Alignment:
Q  164 tttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtgaataccgtgtttac 228  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  20464786 tttattttgagggtgttatttgggggtgagtagtgacgatgggcggtggtggataccgtgtttac 20464850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 228
Target Start/End: Complemental strand, 35341373 - 35341161
Alignment:
Q  14 gaagtcagttctttgtcttaagttgggttttgggcttt-gtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttca 112  Q
    |||||||| |||||| || ||||||| |||||| |||| || |||||||||||||||||||||||| ||| |||| |||||  |||| |||| || ||||    
T  35341373 gaagtcagctctttggctcaagttggtttttggccttttgttttgtgctctttcggtggatcggagttcgagagg-ttgtggaagctgcatgttcattca 35341275  T
Q  113 gttagatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttga-gggtgttatttgtgggtgagtagtgacgatgggcggtg 211  Q
    ||||   ||| |||| |||||||||||| || |||||||  || | ||||||||||||||| ||||||| | || |||||||||||||||||||| |||     
T  35341274 gttatgagcttttcg-aatgtggctcag-tttggtgttgaagtttgggagttttattttgaggggtgttctctg-gggtgagtagtgacgatgggtggtt 35341178  T
Q  212 gtgaataccgtgtttac 228  Q
    | | |||| ||||||||    
T  35341177 gcggatactgtgtttac 35341161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 55 - 205
Target Start/End: Complemental strand, 31050654 - 31050505
Alignment:
Q  55 ttgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagttagatgctcttcgaaatgtggctcagcttgggtgttgggg 154  Q
    |||||||||||| ||||||||||||||| |||| |||||  |||| |||| || ||| |||||  ||| |||| | ||||||| |||||||||||||  |    
T  31050654 ttgtgctctttcagtggatcggaggtcgagagg-ttgtggaagctgcatgttcattcggttaggagcttttcg-attgtggctaagcttgggtgttgaag 31050557  T
Q  155 tctaggagttttattttga-gggtgttatttgtgggtgagtagtgacgatgg 205  Q
    ||| |  |||||||||||| |||||||  ||| |||||||||||||||||||    
T  31050556 tctggctgttttattttgaggggtgttccttgggggtgagtagtgacgatgg 31050505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 206
Target Start/End: Original strand, 2825871 - 2826020
Alignment:
Q  55 ttgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagttagatgctcttcgaaatgtggctcagcttgggtgttgggg 154  Q
    |||| ||||||||||||||||||||||  |||| |||||  |||| |||| || ||| |||||  ||| |||| || |||| |||| ||||||||||  |    
T  2825871 ttgtactctttcggtggatcggaggtctagagg-ttgtggaagctgcatgttcattcggttaggagcttttcg-aaggtggttcagtttgggtgttgaag 2825968  T
Q  155 tctaggagttttattttga-gggtgttatttgtgggtgagtagtgacgatggg 206  Q
    | | ||||||||||||||| ||||||| | || ||||||||||||||||||||    
T  2825969 tttgggagttttattttgaggggtgttctctg-gggtgagtagtgacgatggg 2826020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 25753220 - 25753285
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcg 82  Q
    ||||||||||||| || ||||| | ||||||||||| ||||||  ||||||||||||||||||||||    
T  25753220 agtcagttctttggctcaagtttgattttgggctttttattgt-ttctttcggtggatcggaggtcg 25753285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 39338898 - 39338695
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagtt 115  Q
    ||||||||||||| || ||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||  |||||||||| |||    
T  39338898 agtcagttctttgactcaagttggtttttgggctttgtgttgtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgaatgatccttcggtt 39338799  T
Q  116 agatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtga 215  Q
    || ||||||||||| |||| |||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||     
T  39338798 aggtgctcttcgaattgtgactcagcttgggtgttgaggtctgggagttttattttgagggtgttctttgtgggtgagtagtgacgatgggcgatggtgg 39338699  T
Q  216 atac 219  Q
    ||||    
T  39338698 atac 39338695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 22 - 228
Target Start/End: Original strand, 10524155 - 10524360
Alignment:
Q  22 ttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagttagatgc 121  Q
    ||||||| || ||||||| ||||||||||||| ||||||||||||||||  |||||||||| |||||||||||||||| ||||||||||| ||||| |||    
T  10524155 ttctttgactcaagttggtttttgggctttgtgttgtgctctttcggtgt-tcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgc 10524253  T
Q  122 tcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtgaataccg 221  Q
    ||||||| |||||||||||||||||||||||||| | |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  10524254 tcttcgatatgtggctcagcttgggtgttggggtttgggagttttatttggagggtgttctttgtgggtgagtagtgacgatgggcggtggtggataccg 10524353  T
Q  222 tgtttac 228  Q
    |||||||    
T  10524354 tgtttac 10524360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 35 - 228
Target Start/End: Complemental strand, 17116894 - 17116700
Alignment:
Q  35 gttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagttagatgctcttcgaaatgtg 134  Q
    ||||| |||| |||||||| ||||||| ||||| | ||| |||||||| ||||||||||||| |||| |||||| || ||||| ||||||||| ||||||    
T  17116894 gttggtttttaggctttgttttgtgctttttcgatagattggaggtcgcgaggtttgtgatatctacttgatccatcggttaggtgctcttcgtaatgtg 17116795  T
Q  135 gctcagcttgggtgttggggtctaggag-ttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtgaataccgtgtttac 228  Q
    |||||||||||||||||||||||  ||| |||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||    
T  17116794 gctcagcttgggtgttggggtctgagagtttttattttgagggtgttctttgtgggtgagtaatgacgatgggcggtggtggataccgtgtttac 17116700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 16 - 217
Target Start/End: Original strand, 387221 - 387423
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggctttg--tattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcag 113  Q
    ||||| ||||||| || ||||||| ||||| |||||   | ||||||||||| |||||||||||||||  |||||||  || |||| |||| || |||||    
T  387221 agtcaattctttgactcaagttggtttttgagcttttgtttttgtgctcttttggtggatcggaggtcacgaggttttgga-agctgcatgttcattcag 387319  T
Q  114 ttagatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggt 213  Q
    | || |||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||| ||||||||||||||||||||    
T  387320 tcaggtgctcttcgataggtggctcagcttgggtgttggggtctgggagttttattttgagggtgttctttgggggtgaatagtgacgatgggcggtggt 387419  T
Q  214 gaat 217  Q
    ||||    
T  387420 gaat 387423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 7874339 - 7874550
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggcttt-gtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagt 114  Q
    |||||| |||||| || ||||||| ||||||||||| || |||||||| ||||||||||||||||||| |||||| |||  | |||| || || ||  ||    
T  7874339 agtcagctctttgactcaagttggtttttgggcttttgttttgtgctcattcggtggatcggaggtcgagaggtt-gtggaaactacttgttcatttggt 7874437  T
Q  115 tagatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgaggg-tgttatttgtgggtgagtagtgacgatgggcggtggt 213  Q
    |||  ||| |||||| |||||||||||||||||||||  |||| |||||||||||||||||| |||| |||| |||||||||||||||||||| ||| ||    
T  7874438 taggagcttttcgaa-tgtggctcagcttgggtgttgaagtcttggagttttattttgagggatgttctttg-gggtgagtagtgacgatgggtggttgt 7874535  T
Q  214 gaataccgtgtttac 228  Q
    | |||| ||||||||    
T  7874536 ggatactgtgtttac 7874550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 55 - 228
Target Start/End: Complemental strand, 14106515 - 14106343
Alignment:
Q  55 ttgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagttagatgctcttcgaaatgtggctcagcttgggtgttgggg 154  Q
    |||||||||||||||||||| ||||||| |||||| |||  || |  |||||| ||| ||||   ||| | |||| |||||||||||||||||||||  |    
T  14106515 ttgtgctctttcggtggatcagaggtcgagaggtt-gtggaagttgtatgatcattcggttaagagctttacgaa-tgtggctcagcttgggtgttgaag 14106418  T
Q  155 tctaggagttttattttga-gggtgttatttgtgggtgagtagtgacgatgggcggtggtgaataccgtgtttac 228  Q
    |||  |||||||||||||| ||||||| |||| |||||||||||||||||| | ||| ||| |||| ||||||||    
T  14106417 tctgagagttttattttgaggggtgttctttgggggtgagtagtgacgatgagtggttgtggatactgtgtttac 14106343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 128 - 204
Target Start/End: Original strand, 7460835 - 7460912
Alignment:
Q  128 aaatgtggctcagcttgggtgttggggtctaggagttttattttga-gggtgttatttgtgggtgagtagtgacgatg 204  Q
    ||||||||||||||||||||||||  |||| ||||||||||||||| ||||||| |||| || |||||||||||||||    
T  7460835 aaatgtggctcagcttgggtgttgaagtctgggagttttattttgaggggtgttctttggggttgagtagtgacgatg 7460912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 228
Target Start/End: Original strand, 5254321 - 5254511
Alignment:
Q  33 aagttgggttttgggcttt-gtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagttagatgctcttcgaaat 131  Q
    ||||||| ||| ||||||| || ||||||| |||||||||||||||||||| |||| |||||  |||| |||| || ||| ||| |  ||| |||| |||    
T  5254321 aagttggttttcgggcttttgttttgtgctttttcggtggatcggaggtcgagagg-ttgtggaagctgcatgttcattcggtttggagcttttcg-aat 5254418  T
Q  132 gtggctcagcttgggtgttggggtctaggagttttattttga-gggtgttatttgtgggtgagtagtgacgatgggcggtggtgaataccgtgtttac 228  Q
    ||||||||| ||||||||||  ||||  |||||   |||||| ||||||| ||  ||||||||||||||||||||| ||| ||| |||| ||||||||    
T  5254419 gtggctcagtttgggtgttgaagtctgagagtt---ttttgaggggtgttctt--tgggtgagtagtgacgatgggtggttgtggatactgtgtttac 5254511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 16952413 - 16952215
Alignment:
Q  19 cagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagttaga 118  Q
    |||||||||| || ||||| |||||||| | || | | ||| |||||||||||||||||||| | |||||  |||  ||||| | |||| ||| | |||     
T  16952413 cagttctttggctcaagtttggttttggacattttttggtgttctttcggtggatcggaggttgagaggtg-gtggaagctaaacgatctttcggatagg 16952315  T
Q  119 tgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgaggg-tgttatttgtgggtgagtagtgacgatgggcggtggtgaat 217  Q
     ||| |||| | ||||| ||| ||| ||||||| || || ||||||| |||| ||||| |||| |||| |||||||||||||||||| | |||| |||||    
T  16952314 agcttttcgga-tgtggatcaactttggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaat 16952216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 17023078 - 17022880
Alignment:
Q  19 cagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagttaga 118  Q
    |||||||||| || ||||| |||||||| | || | | ||| |||||||||||||||||||| | |||||  |||  ||||| | |||| ||| | |||     
T  17023078 cagttctttggctcaagtttggttttggacattttttggtgttctttcggtggatcggaggttgagaggtg-gtggaagctaaacgatctttcggatagg 17022980  T
Q  119 tgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgaggg-tgttatttgtgggtgagtagtgacgatgggcggtggtgaat 217  Q
     ||| |||| | ||||| ||| ||| ||||||| || || ||||||| |||| ||||| |||| |||| |||||||||||||||||| | |||| |||||    
T  17022979 agcttttcgga-tgtggatcaactttggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaat 17022881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 17060384 - 17060186
Alignment:
Q  19 cagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagttaga 118  Q
    |||||||||| || ||||| |||||||| | || | | ||| |||||||||||||||||||| | |||||  |||  ||||| | |||| ||| | |||     
T  17060384 cagttctttggctcaagtttggttttggacattttttggtgttctttcggtggatcggaggttgagaggtg-gtggaagctaaacgatctttcggatagg 17060286  T
Q  119 tgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgaggg-tgttatttgtgggtgagtagtgacgatgggcggtggtgaat 217  Q
     ||| |||| | ||||| ||| ||| ||||||| || || ||||||| |||| ||||| |||| |||| |||||||||||||||||| | |||| |||||    
T  17060285 agcttttcgga-tgtggatcaactttggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaat 17060187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 14405246 - 14405305
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggcttt-gtattgtgctctttcggtggatc 74  Q
    |||||| |||||| || ||||||| ||||||||||| || ||||||||||||||||||||    
T  14405246 agtcagctctttggctcaagttggtttttgggcttttgttttgtgctctttcggtggatc 14405305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 13337320 - 13337393
Alignment:
Q  14 gaagtcagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggt 88  Q
    ||||||||||||||| || ||||| |||||||| |||| ||| ||  ||||||||||||| |||||||| |||||    
T  13337320 gaagtcagttctttgactcaagttaggttttggactttttatggt-ttctttcggtggataggaggtcgagaggt 13337393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 206
Target Start/End: Original strand, 14405359 - 14405437
Alignment:
Q  130 atgtggctcagcttgggtgttggggtctaggagttttattttgaggg-tgtt-atttgtgggtgagtagtgacgatggg 206  Q
    |||||||||  |||||||||||  |||| |||||||||||||||||| ||||  |||| |||||||||||||| |||||    
T  14405359 atgtggctcgacttgggtgttgaagtctgggagttttattttgagggatgttcttttgggggtgagtagtgacaatggg 14405437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 1269529 - 1269596
Alignment:
Q  14 gaagtcagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcg 82  Q
    ||||||||||||||| || ||||| ||||||||| ||| ||| ||  |||||| |||||||||||||||    
T  1269529 gaagtcagttctttggctcaagtttggttttgggatttttatggt-ttctttcagtggatcggaggtcg 1269596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 34378146 - 34378358
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagtt 115  Q
    ||||||||||||| |  ||||||| ||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||| |   ||||||||| |||    
T  34378146 agtcagttctttgacacaagttggtttttgggctttgttttgtgctctttcggtggaccggaggtcgcgaggtttgtgatagttgtttgatccttcggtt 34378245  T
Q  116 agatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtga 215  Q
    |||||||||||| ||||||||||||||||||||||||||| |  ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||     
T  34378246 agatgctcttcgtaatgtggctcagcttgggtgttggggtttgagagttttattttgagggtgttctttgtgggtgagtagtgacgatggacggtggtgg 34378345  T
Q  216 ataccgtgtttac 228  Q
    |||||||||||||    
T  34378346 ataccgtgtttac 34378358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 18593295 - 18593503
Alignment:
Q  20 agttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagttagat 119  Q
    ||||||||| || ||||||| |||||||||| || ||||||||||||||||| |||||||||| ||| |||||||||| | ||||||||||| ||||| |    
T  18593295 agttctttgactcaagttggtttttgggcttagtgttgtgctctttcggtggttcggaggtcgcgagatttgtgataggtgcatgatccttcggttaggt 18593394  T
Q  120 gctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtgaatac 219  Q
    | |||||||||||||||||| ||||||||||||||||| |||||||||||| |||| |||| ||||||||||||||||||||||||||||||||| ||||    
T  18593395 gttcttcgaaatgtggctcaacttgggtgttggggtctgggagttttatttggaggatgttctttgtgggtgagtagtgacgatgggcggtggtggatac 18593494  T
Q  220 cgtgtttac 228  Q
    |||||||||    
T  18593495 cgtgtttac 18593503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 23 - 221
Target Start/End: Original strand, 698416 - 698614
Alignment:
Q  23 tctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagttagatgct 122  Q
    |||||| || ||||||| ||||||||||||| |||| ||||||| |||| || ||||| | |||||||||||||||| ||| ||||||| ||||| ||||    
T  698416 tctttgactcaagttggtttttgggctttgtgttgtactctttctgtggttcagaggttgcgaggtttgtgatagctgcataatccttcggttaggtgct 698515  T
Q  123 cttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtgaataccg 221  Q
    ||| |||||||||||||||||||||||||||||||  ||||||||||| ||||||||| |||||||||||||||||||||| |||| ||||| ||||||    
T  698516 ctttgaaatgtggctcagcttgggtgttggggtctgagagttttatttggagggtgttctttgtgggtgagtagtgacgatcggcgatggtggataccg 698614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 29087529 - 29087739
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggcttt-gtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagt 114  Q
    |||||||||||||  | || |||| || |||||||| || |||||||||||||||||||||||||||| ||||||  || ||||| ||||||||||  ||    
T  29087529 agtcagttctttgaatcaaattggtttctgggcttttgttttgtgctctttcggtggatcggaggtcgcgaggtta-tggtagctccatgatcctttggt 29087627  T
Q  115 tagatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtg 214  Q
     || ||||||||| | ||||||||| ||| | ||||||||||| |||| |||||||||||||| || |||  ||||||||||||||||||||||||||||    
T  29087628 caggtgctcttcgta-tgtggctcaacttagatgttggggtctgggagctttattttgagggt-ttctttaggggtgagtagtgacgatgggcggtggtg 29087725  T
Q  215 aataccgtgtttac 228  Q
    ||||||||||||||    
T  29087726 aataccgtgtttac 29087739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 41 - 228
Target Start/End: Complemental strand, 18313650 - 18313464
Alignment:
Q  41 ttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagttagatgctcttcgaaatgtggctcag 140  Q
    |||||| |||||| |||| |||||||||||||| | |||||| |||||||||||||||| ||||||| |||  |||| ||||||||||||||||||| ||    
T  18313650 ttttggactttgtgttgtactctttcggtggattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggcttag 18313551  T
Q  141 cttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtgaataccgtgtttac 228  Q
     |||||| || || | | |||||||| | || |||||||| ||  ||||||||||||||||||| | |||| || ||| |||||||||    
T  18313550 tttgggttttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatgagtggtgatggatatcgtgtttac 18313464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 96 - 228
Target Start/End: Complemental strand, 7161969 - 7161837
Alignment:
Q  96 agctacatgatccttcagttagatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagta 195  Q
    |||| ||||||||||  || || || ||||||| ||||||||||||||| |||||||||||| ||||||||||||||| |||||| |||| |||||||||    
T  7161969 agctgcatgatcctttggtcaggtgttcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagta 7161870  T
Q  196 gtgacgatgggcggtggtgaataccgtgtttac 228  Q
    |||||| |||| ||||||| | | |||||||||    
T  7161869 gtgacgttgggtggtggtggaaatcgtgtttac 7161837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 7162350 - 7162276
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggcttt-gtattgtgctctttcggtggatcggaggtcgtgaggtt 89  Q
    ||||||||||||| || ||||||| ||||||| ||| || ||||||||||||| |||||||||||||| ||||||    
T  7162350 agtcagttctttgactcaagttggtttttgggtttttgttttgtgctctttcgatggatcggaggtcgcgaggtt 7162276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 8297516 - 8297587
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggt 88  Q
    ||||||||||||| || ||||| |||||||| |||| ||| ||  |||||||||| |||||||||||||||||    
T  8297516 agtcagttctttggctcaagtttggttttggactttttatggtt-tctttcggtgaatcggaggtcgtgaggt 8297587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 14302463 - 14302392
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggt 88  Q
    |||||||||||||    ||||| ||||||||||||| ||| ||  |||||||||||||||||||||| |||||    
T  14302463 agtcagttctttggagcaagtttggttttgggctttttatggtt-tctttcggtggatcggaggtcgagaggt 14302392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 5753 - 5966
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggctttgtatt-gtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagt 114  Q
    ||||||||||||| || | ||||| ||||||||||||| || ||||||||||||| ||||||||||||  ||||||||||||||||| ||||||||| ||    
T  5753 agtcagttctttgactcaggttggtttttgggctttgtttttgtgctctttcggtagatcggaggtcgcaaggtttgtgatagctacttgatccttcggt 5852  T
Q  115 tagatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtg 214  Q
    ||| ||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||| |||||| |||||||    
T  5853 taggtgctcttcgtaatgtggctcagcttgggtgttgggatctgggagttttattttgagggtgttttttgtgggtgagtagtgatgatgggaggtggtg 5952  T
Q  215 aataccgtgtttac 228  Q
     ||||| |||||||    
T  5953 gataccatgtttac 5966  T

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Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 3117541 - 3117753
Alignment:
Q  16 agtcagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagtt 115  Q
    ||||||||||||| || ||||||| ||||||||||||| |||||||||||  |||| |||||||||| |||||||||||||| | |||||||||||  ||    
T  3117541 agtcagttctttgactcaagttggtttttgggctttgtgttgtgctctttatgtggttcggaggtcgcgaggtttgtgatagttgcatgatccttcgatt 3117640  T
Q  116 agatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtga 215  Q
    |  ||||||||||||||||||||| ||||||||||||||||| ||||||||||||  |||||||| ||||||||| ||||| ||||||| |||||||||     
T  3117641 atgtgctcttcgaaatgtggctcaacttgggtgttggggtctgggagttttatttatagggtgttctttgtgggtaagtagagacgatgagcggtggtgg 3117740  T
Q  216 ataccgtgtttac 228  Q
     ||||||||||||    
T  3117741 ttaccgtgtttac 3117753  T

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Target: chr6; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 103 - 227
Target Start/End: Original strand, 10541967 - 10542091
Alignment:
Q  103 tgatccttcagttagatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacga 202  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||| || |||||||||||||||||||||    
T  10541967 tgatccttcggttaggtgctcttcgaaatgtggctcagcttgggtgttggggtctggaagttttatttggagggtattctttgtgggtgagtagtgacga 10542066  T
Q  203 tgggcggtggtgaataccgtgttta 227  Q
    |||||||||||| ||||||| ||||    
T  10542067 tgggcggtggtggataccgtattta 10542091  T

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Target: chr6; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 113 - 228
Target Start/End: Original strand, 14663222 - 14663337
Alignment:
Q  113 gttagatgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtgg 212  Q
    |||||||| ||||||||||||||||| |||||| ||||||||| | ||||||||||||||||| |||| |||| ||||||||||||||||||||||||||    
T  14663222 gttagatgttcttcgaaatgtggctcggcttggatgttggggtttgggagttttattttgaggatgttctttgcgggtgagtagtgacgatgggcggtgg 14663321  T
Q  213 tgaataccgtgtttac 228  Q
    || |||  ||||||||    
T  14663322 tggatattgtgtttac 14663337  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 20701832 - 20701765
Alignment:
Q  20 agttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggt 88  Q
    ||||||||| |||||||| ||||||||||||| ||| ||  |||||||||||||||||||||| |||||    
T  20701832 agttctttggcttaagtttggttttgggctttttatggtt-tctttcggtggatcggaggtcgagaggt 20701765  T

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Target: scaffold0068 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 22 - 228
Target Start/End: Complemental strand, 35799 - 35596
Alignment:
Q  22 ttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcgtgaggtttgtgatagctacatgatccttcagttagatgc 121  Q
    ||||||| |||||||||| ||||||||||| | |||||||||||||||||||||||||||  ||| |||||||||||| |||||||| || ||||| |||    
T  35799 ttctttgacttaagttggtttttgggctttatgttgtgctctttcggtggatcggaggtcacgagatttgtgatagctgcatgatccatcggttaggtgc 35700  T
Q  122 tcttcgaaatgtggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtgaataccg 221  Q
    ||||||||||| |||||||||||||||||||||| | |||||||  |||| || ||||| || |  ||||||| |||||||||||| |||||| |||| |    
T  35699 tcttcgaaatgaggctcagcttgggtgttggggtgtgggagttt--tttttagagtgttcttagcaggtgagt-gtgacgatgggcagtggtggatactg 35603  T
Q  222 tgtttac 228  Q
    |||||||    
T  35602 tgtttac 35596  T

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Target: scaffold0200 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 19429 - 19496
Alignment:
Q  14 gaagtcagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcg 82  Q
    ||||||||||||||| || ||||| ||||||||||||| ||| ||  ||||||||||||||||||||||    
T  19429 gaagtcagttctttggctcaagtttggttttgggctttttatggt-ttctttcggtggatcggaggtcg 19496  T

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Target: scaffold0172 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 19113 - 19174
Alignment:
Q  164 tttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtgaataccgtgtttac 228  Q
    |||||||||||||||||  |||||||||||||||   |||| ||||||||  |||||||||||||    
T  19113 tttattttgagggtgttcattgtgggtgagtagt---gatgagcggtggtagataccgtgtttac 19174  T

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Target: scaffold0119 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 42173 - 42106
Alignment:
Q  14 gaagtcagttctttgtcttaagttgggttttgggctttgtattgtgctctttcggtggatcggaggtcg 82  Q
    ||||||||||||||| || ||||| ||||||||| ||| ||| ||  |||||| |||||||||||||||    
T  42173 gaagtcagttctttggctcaagtttggttttgggatttttatggt-ttctttcagtggatcggaggtcg 42106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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