View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5396-Insertion-2 (Length: 910)
Name: NF5396-Insertion-2
Description: NF5396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5396-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 39 - 578
Target Start/End: Original strand, 48568059 - 48568587
Alignment:
| Q |
39 |
taagaaaagatcaaaaatttgacttatttgctagatcccacttataggatgtgttgttgatgtaaaaataataaactttgatattttttg-catgtttct |
137 |
Q |
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| T |
48568059 |
taagaaaagaacaaaaatttgacttatttgctagatcacacttattggatgtgtttttgatgtaaaaataataaactttgatattttttcacatgtttct |
48568158 |
T |
|
| Q |
138 |
ctcgttatcttcatccattttcgttcgtccatactttaggtgatgtcacactttacaaactacagatacatttcttttcatctatccttgtgaaaattat |
237 |
Q |
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| T |
48568159 |
ctcgttatcttcatccattttcgttcgtccatactttaagtgatgtcacactttgcaaactacagatacatttcttttcatctatccttgtgaaaattat |
48568258 |
T |
|
| Q |
238 |
gttacttccagggggaaaggtgattatcagattgactatgtaccaacaccacgagtcgctgaggcagacaaaagcaatgatcaaaggtgtgcaccagttt |
337 |
Q |
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| T |
48568259 |
gttacttccagggggaaaggtgattatcagattgactatgtaccagcaccacgagtcactgaagcagacaaaagcaatgatcaaaggtgtgcaccaattt |
48568358 |
T |
|
| Q |
338 |
aagcagactaatcattcgtgtgatttaaagcaagaaaatgcaataaaaaatctggagtataataagggaaatgaatgctatataagaaatgccatcatgt |
437 |
Q |
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| T |
48568359 |
aagcagactaatcactcgtgtgatttaaagcaagaaaatgtaataaaaaatctggagtataataagggaaatgaatgctatataagaaatgccatcatgt |
48568458 |
T |
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| Q |
438 |
caacttggttattgtcttggttattgtcctcgtcttccttggaagtaagaaagtgtccattttctttggctcggtgtttatatcaatgttcttaatcagg |
537 |
Q |
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| T |
48568459 |
caa------------cttggttattgtcctcgtcttccttggaagtaagaaagtgtccattttctttggctcggtgtttatataaatgttcttaatcagg |
48568546 |
T |
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| Q |
538 |
ggttatttagcttggtatatattcacttaccttttctattg |
578 |
Q |
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| T |
48568547 |
ggttatttagcttgttatatattcacttaccttttctattg |
48568587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 576 - 736
Target Start/End: Original strand, 48568644 - 48568802
Alignment:
| Q |
576 |
ttgttatcaagatatttaagtgtaatatttcatgtatccttcagtatttaagggatgtctccttacaaatgctatacatgtgacagttctgacttggaaa |
675 |
Q |
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||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||| | |||| |||||||||||||||| ||||| | ||||||||| |
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| T |
48568644 |
ttgttatcaagatatttaagtttaatttttcatgtatccttcagtatttaagg-atgtattcttagaaatgctatacatgtgtcagttttaacttggaaa |
48568742 |
T |
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| Q |
676 |
tacactaatgcaggagcatgcggaaggccattcctcatcttgtctctctagatactagtca |
736 |
Q |
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| T |
48568743 |
tacacttatgcaagagcaggcggaaggccattcctcatcttgtctc-ctagataatagtca |
48568802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 243 - 333
Target Start/End: Complemental strand, 10823055 - 10822965
Alignment:
| Q |
243 |
ttccagggggaaaggtgattatcagattgactatgtaccaacaccacgagtcgctgaggcagacaaaagcaatgatcaaaggtgtgcacca |
333 |
Q |
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| T |
10823055 |
ttccagggggaaaggtgattatcagattgactatgtgccagcaccgcgaatcaccgaagcagacaaacaaaatgatcgaaggtatgcacca |
10822965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 243 - 353
Target Start/End: Original strand, 36144282 - 36144391
Alignment:
| Q |
243 |
ttccagggggaaaggtgattatcagattgactatgtaccaacaccacgagtcgctgaggcagacaaaagcaatgatcaaaggtgtgcaccagtttaagca |
342 |
Q |
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| T |
36144282 |
ttccagagggaaaggtgattatcagattgactatgtgccagcaccgcgaatcaccgaagcagacaaacaaaatgatcgaaggtatgcaccaattt-agca |
36144380 |
T |
|
| Q |
343 |
gactaatcatt |
353 |
Q |
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|||| |||||| |
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| T |
36144381 |
gactgatcatt |
36144391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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