View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5396-Insertion-3 (Length: 623)
Name: NF5396-Insertion-3
Description: NF5396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5396-Insertion-3 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-159; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 308 - 623
Target Start/End: Original strand, 53671918 - 53672232
Alignment:
| Q |
308 |
acctgaatgcttggatatgaattaaattacttattactcagatataaattagcacacttgctaaaattgtatcaatttttaatcatagcatttcttgtgt |
407 |
Q |
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| T |
53671918 |
acctgaatgcttggatatgaattaaattacttattactc-gatataaattagcacacttgctaaaattgtatcaatttttaatcatagcatttcttgtgt |
53672016 |
T |
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| Q |
408 |
tgcaattgtgttgttttaatatatcatcttctggc-ttttttcatataaaaaagaaaatctatcttaaccatccatccattgtgaagattaattgttctc |
506 |
Q |
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| T |
53672017 |
tgcaattgtgttgttttaatatatcatcttctggccttttttcatataaaaaagaaaata-atcttaaccatccatccattgtgaagattaattgttctc |
53672115 |
T |
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| Q |
507 |
atgctttcatattctaacattctcatatgttattaagttacaaaaataatcagccaacttgtaatcttcaacttcattacaacatactcctctctgaaac |
606 |
Q |
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| T |
53672116 |
atgctttcatattctaacattctcatatgttattaagttacaaaaataatcagccaacttctaatcttcaacttcattacaacatactcctctctgaaac |
53672215 |
T |
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| Q |
607 |
ctcaaatattgtatatg |
623 |
Q |
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| T |
53672216 |
ctcaaatattgtatatg |
53672232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 8 - 253
Target Start/End: Original strand, 53671664 - 53671907
Alignment:
| Q |
8 |
attaactcgtgccttcagggcaaaagttggcatttcccataaataaatacactatgaaacatcaattcaatgttttcgacgaccttgaaaaataacactg |
107 |
Q |
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| T |
53671664 |
attaactcgtgccttcagggcaaaagttggcatttcccgtaaataaatac--tacgaaacatcaattcaatgttttctacgaccttgaaaaataacactg |
53671761 |
T |
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| Q |
108 |
atcataaaccttggtgacaatgatttgcagcattggaaatattttcacagctgaagccctatagcaaaggttgatgcttttattctgaatggtgaacctg |
207 |
Q |
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| T |
53671762 |
atcataaaccttggtgacagtgatttgcagcattggaaatattttcacagctgaagcactatagcaaaggttgatgcttttattcagaatggtgaacctg |
53671861 |
T |
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| Q |
208 |
aatgagaactgtgattatcttaacttggaatttctcttaatcttag |
253 |
Q |
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| T |
53671862 |
aatgagaactgtgattatcttaacttggaatttctcttaatcttag |
53671907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 238 - 284
Target Start/End: Original strand, 53674335 - 53674381
Alignment:
| Q |
238 |
tttctcttaatcttaggaccagattaaggtgtatatgtcatgcttga |
284 |
Q |
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| T |
53674335 |
tttctcttaatcttaggaccagatgaaggtgtatatgtcaagcttga |
53674381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 381
Target Start/End: Original strand, 28957328 - 28957371
Alignment:
| Q |
338 |
ttattactcagatataaattagcacacttgctaaaattgtatca |
381 |
Q |
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| T |
28957328 |
ttattacttcgatataaattagtacacttgctaaaattgtatca |
28957371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 383
Target Start/End: Original strand, 6374789 - 6374834
Alignment:
| Q |
338 |
ttattactcagatataaattagcacacttgctaaaattgtatcaat |
383 |
Q |
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| T |
6374789 |
ttattacttcgatataaattagtatacttgctaaaattgtatcaat |
6374834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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