View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5396_high_1 (Length: 523)
Name: NF5396_high_1
Description: NF5396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5396_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 276 - 518
Target Start/End: Complemental strand, 48565444 - 48565207
Alignment:
| Q |
276 |
atagaataagcctttggtcatcatggttagactagactgtagaaatctcggaaattcactagcggtatttaaataactcagattaaatgaaaaagactta |
375 |
Q |
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| T |
48565444 |
atagaataagcctttggtcatcatggttagactagactgtagaaatctcggaaattcactagcggtatttaa----ctcagattaaatgaaaa-gactta |
48565350 |
T |
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| Q |
376 |
tgttagttagcatgcagaagtcatcaaatgtttagtttttataagtttgcaccgcaagataatgtaaatcaatatgaactaacaaaaaataattttatta |
475 |
Q |
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| T |
48565349 |
tgttagttagcatgtagaagtcatcaaatgtttagtttttataagtttgcaccgcaagataatgtaaatcaatatgaactaacaaaaaataattttatta |
48565250 |
T |
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| Q |
476 |
aactaccaagtgaatcggtatgcatttgctttcctatgctact |
518 |
Q |
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| T |
48565249 |
aactaccaagtgaatcggtatgcatttgctttcctatgatact |
48565207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 48568032 - 48567921
Alignment:
| Q |
19 |
atttcaactctcttgaggctttcaaatatgcttggatatctctttcaaattaatcaattttgaatgacctaaaatgttaactatagacctgctcttaagt |
118 |
Q |
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| T |
48568032 |
atttcaactctcttgaggctttcaaatatgctcggatatctctttcaaattaatcaattttgaatgacctaaaatgttaactatagacctgctcttaagt |
48567933 |
T |
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| Q |
119 |
acttataccttg |
130 |
Q |
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| T |
48567932 |
acttataccttg |
48567921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 204 - 264
Target Start/End: Complemental strand, 48565548 - 48565488
Alignment:
| Q |
204 |
agagaaaaaagagggagattgcacacacttcaaatatgatgattcaatttcccatccctca |
264 |
Q |
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| T |
48565548 |
agagaaaaaagagggagattgcacacacttcaaatatgatgattcaatttcccatacctca |
48565488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 156
Target Start/End: Complemental strand, 48565601 - 48565571
Alignment:
| Q |
126 |
ccttgtgaagagaggacgaaccagtgacata |
156 |
Q |
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| T |
48565601 |
ccttgtgaagagaggacgaaccagtgacata |
48565571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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