View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5396_high_2 (Length: 517)
Name: NF5396_high_2
Description: NF5396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5396_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 20 - 508
Target Start/End: Complemental strand, 28873902 - 28873413
Alignment:
| Q |
20 |
cagacatgctgccacaggtttttaagctcattcttgcgtatgggttttactagaaagtcgacagcccccttggacaaacacttaaagactaaacccatag |
119 |
Q |
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| T |
28873902 |
cagacatgctgccacaggtttttaagctcattcttgcgtatgggttttactagaaagtcgacagccccctttgacaaacacttaaagactaaacccatag |
28873803 |
T |
|
| Q |
120 |
agtcatgagatgacatcactgcagaccaatcccattagaagccatagaaagagtagctcttttacagcatgtaatgagnnnnnnnn-tgctcaaaccaaa |
218 |
Q |
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| T |
28873802 |
agtcatgagatgacatcactgcagaccaatcccattagaagccatagaaagagtagctcttttacagcatgtaatgaggaaaaaaaatgctcaaaccaaa |
28873703 |
T |
|
| Q |
219 |
catatataggcacttggaaaaacttactaattactggaacgtttttccgtgttgggtggcccataatcttgtatagaagtgcaatgcctgataagccagg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28873702 |
catatataggcacttggaaaaacttactaattactggaacatttttccgtgttgggtggcccataatcttgtatagaagtgcaatgcctgataagccagg |
28873603 |
T |
|
| Q |
319 |
cattgccacctcagttaaaatgagatcaatatgattggttaaatcctccaaaaccttccaagcttgcaatccatttgctgcttcaataactgatacaaac |
418 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28873602 |
cattgccacctcagttaaaatgagatcaatgtgattggttaaatcctccaaaaccttccaagcttgcaatccatttgctgcttcaataactgatacaaac |
28873503 |
T |
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| Q |
419 |
acaaacaagatcatattaaaatctgtttcaaaaacaattgaggaaaattaaagaaaaataggcaggttgatgggaggaactgatgatgtc |
508 |
Q |
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| T |
28873502 |
acaaacaagatcatattaaaatctgtttcaaaaacaattgaggaaaattaaagaaaaataggcagattcatgggaggaactgatgatgtc |
28873413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 142
Target Start/End: Complemental strand, 22685933 - 22685814
Alignment:
| Q |
23 |
acatgctgccacaggtttttaagctcattcttgcgtatgggttttactagaaagtcgacagcccccttggacaaacacttaaagactaaacccatagagt |
122 |
Q |
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||||| ||||| ||||||||||| || ||| | || || ||||| |||| ||| || | || || || |||||||||||||| |||| ||||||||| | |
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| T |
22685933 |
acatgttgccagaggtttttaagttcgttcctccgaataggtttgactaaaaaatcagctgcgccttttgacaaacacttaaacactatacccatagaat |
22685834 |
T |
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| Q |
123 |
catgagatgacatcactgca |
142 |
Q |
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| T |
22685833 |
catgacatgacatcactgca |
22685814 |
T |
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