View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5397-Insertion-2 (Length: 1060)
Name: NF5397-Insertion-2
Description: NF5397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5397-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 455 - 880
Target Start/End: Complemental strand, 40893651 - 40893227
Alignment:
| Q |
455 |
tcaacacaatccaaactagtgatgaaaagttactaataaattgaacaaatgaaatcaatccgaaagaacagcataataataccactgccactgaggatat |
554 |
Q |
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| T |
40893651 |
tcaacacaatccaaactagtgatgaaaagttactaataaattgaacaaatgaaatcaatccgaaagaacagcataataataccactgccactgaggatat |
40893552 |
T |
|
| Q |
555 |
gtttgagtttccgtttcaactttctcaaactcggattcgccattgatattgaaccaatatgttgcttctcacaaaacgtgcaataatcagaatgaaggtt |
654 |
Q |
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| T |
40893551 |
gtttgagtttccgtttcaactttctcaaactcggattcgccattgatattgaaccaatatgttgcttctcacaaaacgtgcaataatcagaatgaaggtt |
40893452 |
T |
|
| Q |
655 |
gttagttcgtataatactgcagcacatgaattctaggacttggttgtgaactgaaatgtcccaaaccctgccatcaattgtacttgttttgactatatgg |
754 |
Q |
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| T |
40893451 |
gttagttcgtataatactgcagcacatgaattctaggacttggttgtgaactgaaatgtcccaaaccctgccatcaattgtacttgttttgactatat-g |
40893353 |
T |
|
| Q |
755 |
gctctaatgaaagtcttgttttgtttatttaatgatgattgctttacgacatgtttacgatatcatggtgcatatttctaagaaattaccggcaagcaaa |
854 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40893352 |
gctctaatgaaagtcttgttttgtttatttaatgattattgctttacaacatgtttacgatatcatggtgcatatttctaagaaattaccggcaagcaaa |
40893253 |
T |
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| Q |
855 |
ggtgttattatgccagagtgcatatg |
880 |
Q |
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| T |
40893252 |
ggtgttattatgccagagtgcatatg |
40893227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 8 - 418
Target Start/End: Complemental strand, 40894110 - 40893700
Alignment:
| Q |
8 |
tcttgcaacaccaatgatttatcttggcaaattcattgcaactacttaaataccccatgcactgttttttcttctctgattccgactatgtttccacaag |
107 |
Q |
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| T |
40894110 |
tcttgcaacaccaatgatttatcttgacaaattcattgcaactacttaaataccccatgcactgttttttcttctctgattccgactatgtttccacaag |
40894011 |
T |
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| Q |
108 |
atagaagagtagtaatactttcgtggacatagttgaaatcagcagaggtcaggtatttgctcaattttgaaatgtccatgaaatcatcattggttaagta |
207 |
Q |
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| T |
40894010 |
atagaagagtagtaatactttcgtggacatagttgaaatcagcagaggtcaggtatttgctcaattttgaaatctccatgaaatcatcatcggttaagta |
40893911 |
T |
|
| Q |
208 |
ttttctcaagtatgaaatgtccgtgtactcgtaatcttatccttttactgcatcataaatcaatcaatgaataaataccaacaacaacaacacattcaaa |
307 |
Q |
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| T |
40893910 |
ttttctcaagtatgaaatgtccgtgtactcgtaatcttatccttttactgcatcataaatcaatcaatgaataaataccaacaacaacaacacattcaaa |
40893811 |
T |
|
| Q |
308 |
aatcataattaaaccatctaaactaaaacaaatgaaatcagaaacaacaataatacccctggccctggggatatactcgagcatggagcagtcctcgaat |
407 |
Q |
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| T |
40893810 |
aatcataattaaaccatctaaactaaaacaaatgaaatcagaaacaacaataatacccctggccctggggatatactcgagcatggagcagtcctcgaat |
40893711 |
T |
|
| Q |
408 |
tcatcctctaa |
418 |
Q |
| |
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||||||||||| |
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| T |
40893710 |
tcatcctctaa |
40893700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 934 - 1060
Target Start/End: Complemental strand, 40893176 - 40893057
Alignment:
| Q |
934 |
aacaataggatcaagatttacggttccttttttgaagagttaccactacctccaccttactcttgtatttaaggtggttttgtaccatttttcatttcat |
1033 |
Q |
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|||||||||||||||||| ||| |||||||||||||||| ||| |||||| ||||||||||||||||||| ||||| ||||||||| |||||||||||| |
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| T |
40893176 |
aacaataggatcaagatt-acg-ttccttttttgaagaggtac-actaccaccaccttactcttgtattt-aggtg--tttgtacca-ttttcatttcat |
40893084 |
T |
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| Q |
1034 |
tgta-gatgagttcaacagaaatcatat |
1060 |
Q |
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|||| |||||| |||||||||| ||||| |
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| T |
40893083 |
tgtaggatgag-tcaacagaaaccatat |
40893057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 289 - 356
Target Start/End: Original strand, 40899158 - 40899225
Alignment:
| Q |
289 |
caacaacaacacattcaaaaatcataattaaaccatctaaactaaaacaaatgaaatcagaaacaaca |
356 |
Q |
| |
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|||||||||||||||||||||||||||| |||| |||||| | ||||||||||||||||||| |||| |
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| T |
40899158 |
caacaacaacacattcaaaaatcataatgaaacattctaaattcaaacaaatgaaatcagaaagaaca |
40899225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 289 - 356
Target Start/End: Original strand, 44154441 - 44154508
Alignment:
| Q |
289 |
caacaacaacacattcaaaaatcataattaaaccatctaaactaaaacaaatgaaatcagaaacaaca |
356 |
Q |
| |
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|||||||||||||||||||||||||||| |||| |||||| | ||||||||||||||||||| |||| |
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| T |
44154441 |
caacaacaacacattcaaaaatcataatgaaacattctaaattcaaacaaatgaaatcagaaagaaca |
44154508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 333 - 366
Target Start/End: Original strand, 40898367 - 40898400
Alignment:
| Q |
333 |
aaacaaatgaaatcagaaacaacaataatacccc |
366 |
Q |
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| T |
40898367 |
aaacaaatgaaatcagaaagaacaataatacccc |
40898400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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