View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5397-Insertion-3 (Length: 610)

Name: NF5397-Insertion-3
Description: NF5397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5397-Insertion-3
NF5397-Insertion-3
[»] chr2 (11 HSPs)
chr2 (8-471)||(41700597-41701065)
chr2 (477-610)||(41701169-41701301)
chr2 (327-400)||(24450600-24450673)
chr2 (292-374)||(30930185-30930269)
chr2 (308-400)||(24548450-24548543)
chr2 (308-389)||(28143928-28144012)
chr2 (326-384)||(45002376-45002433)
chr2 (349-389)||(3912528-3912568)
chr2 (308-400)||(24450980-24451074)
chr2 (330-383)||(630171-630224)
chr2 (349-389)||(30930058-30930098)
[»] chr7 (32 HSPs)
chr7 (308-400)||(33536670-33536764)
chr7 (292-389)||(20561579-20561678)
chr7 (295-389)||(2486377-2486473)
chr7 (292-400)||(21665628-21665737)
chr7 (329-389)||(8237847-8237907)
chr7 (326-398)||(44603916-44603988)
chr7 (326-389)||(1502224-1502287)
chr7 (330-389)||(2739815-2739874)
chr7 (319-389)||(25480486-25480556)
chr7 (329-389)||(18869528-18869588)
chr7 (326-374)||(44606952-44607000)
chr7 (333-400)||(18869739-18869806)
chr7 (331-389)||(8669610-8669668)
chr7 (310-389)||(9669436-9669517)
chr7 (331-400)||(8669738-8669807)
chr7 (331-400)||(8669877-8669946)
chr7 (308-389)||(29529633-29529714)
chr7 (332-400)||(24865204-24865272)
chr7 (295-400)||(33536854-33536961)
chr7 (326-389)||(3743122-3743185)
chr7 (308-400)||(9669649-9669742)
chr7 (327-398)||(9677059-9677130)
chr7 (330-389)||(21666244-21666303)
chr7 (316-400)||(28644942-28645028)
chr7 (343-400)||(21666075-21666132)
chr7 (310-400)||(24718992-24719084)
chr7 (330-383)||(24719213-24719266)
chr7 (330-387)||(28645295-28645352)
chr7 (356-400)||(14657334-14657378)
chr7 (308-389)||(29239370-29239453)
chr7 (329-400)||(35144569-35144643)
chr7 (329-389)||(42586214-42586274)
[»] chr4 (15 HSPs)
chr4 (326-400)||(25051198-25051272)
chr4 (292-400)||(25051331-25051440)
chr4 (326-400)||(25051038-25051112)
chr4 (295-389)||(37996671-37996767)
chr4 (330-398)||(11132268-11132336)
chr4 (326-389)||(32668835-32668898)
chr4 (310-389)||(13540460-13540541)
chr4 (293-383)||(19583368-19583457)
chr4 (308-381)||(16177287-16177362)
chr4 (308-400)||(34852996-34853088)
chr4 (308-400)||(13540673-13540766)
chr4 (327-398)||(13542003-13542074)
chr4 (333-383)||(19585334-19585384)
chr4 (295-400)||(25446942-25447047)
chr4 (341-389)||(10326111-10326159)
[»] chr1 (22 HSPs)
chr1 (316-400)||(43761347-43761433)
chr1 (327-400)||(3592626-3592699)
chr1 (295-389)||(34903612-34903708)
chr1 (333-389)||(39313088-39313144)
chr1 (349-414)||(3591774-3591840)
chr1 (326-388)||(11080645-11080707)
chr1 (292-383)||(15198750-15198843)
chr1 (295-400)||(16682063-16682169)
chr1 (327-400)||(15913300-15913373)
chr1 (316-398)||(32034942-32035026)
chr1 (333-400)||(16086900-16086967)
chr1 (349-400)||(39157547-39157598)
chr1 (296-389)||(39312935-39313032)
chr1 (326-388)||(15121826-15121887)
chr1 (326-388)||(15146014-15146075)
chr1 (330-400)||(46022945-46023015)
chr1 (310-372)||(3591906-3591970)
chr1 (330-383)||(48994897-48994950)
chr1 (307-400)||(15114838-15114933)
chr1 (307-400)||(15123048-15123143)
chr1 (307-400)||(15139354-15139449)
chr1 (307-400)||(15147236-15147331)
[»] chr6 (17 HSPs)
chr6 (296-389)||(31794944-31795038)
chr6 (332-400)||(11959866-11959934)
chr6 (295-383)||(5089615-5089705)
chr6 (326-413)||(11854208-11854295)
chr6 (316-372)||(15555445-15555501)
chr6 (333-400)||(2999472-2999539)
chr6 (326-389)||(15554430-15554493)
chr6 (295-408)||(15556434-15556547)
chr6 (335-394)||(15554776-15554836)
chr6 (326-374)||(15555126-15555174)
chr6 (292-379)||(31794770-31794860)
chr6 (332-387)||(15555933-15555988)
chr6 (333-379)||(15556292-15556338)
chr6 (326-400)||(15558795-15558868)
chr6 (294-389)||(4979870-4979964)
chr6 (330-400)||(7566121-7566188)
chr6 (308-389)||(31480956-31481039)
[»] chr5 (23 HSPs)
chr5 (350-400)||(40373650-40373700)
chr5 (292-379)||(41912815-41912904)
chr5 (292-375)||(26657521-26657605)
chr5 (292-375)||(26929109-26929193)
chr5 (292-387)||(3419995-3420091)
chr5 (333-400)||(17762113-17762180)
chr5 (308-389)||(1832902-1832982)
chr5 (338-400)||(37447741-37447803)
chr5 (308-389)||(40318368-40318448)
chr5 (308-389)||(41409092-41409172)
chr5 (308-389)||(17762794-17762875)
chr5 (349-414)||(41912704-41912768)
chr5 (327-399)||(17694034-17694106)
chr5 (316-389)||(22554745-22554820)
chr5 (294-362)||(12048740-12048810)
chr5 (330-389)||(21118353-21118412)
chr5 (331-385)||(54194-54248)
chr5 (308-362)||(17694197-17694253)
chr5 (292-398)||(21117522-21117630)
chr5 (333-370)||(22554269-22554306)
chr5 (315-388)||(3419811-3419886)
chr5 (330-374)||(22555121-22555165)
chr5 (326-398)||(40373794-40373866)
[»] chr3 (21 HSPs)
chr3 (330-400)||(1102328-1102398)
chr3 (349-431)||(3142476-3142558)
chr3 (295-400)||(30081519-30081626)
chr3 (329-391)||(7165500-7165562)
chr3 (332-400)||(8494242-8494310)
chr3 (329-389)||(20126209-20126269)
chr3 (316-400)||(4144981-4145067)
chr3 (310-389)||(31720862-31720941)
chr3 (308-400)||(37834445-37834538)
chr3 (335-400)||(4160961-4161026)
chr3 (292-372)||(495180-495262)
chr3 (316-400)||(4161146-4161232)
chr3 (292-400)||(12946498-12946607)
chr3 (316-388)||(13698423-13698497)
chr3 (342-401)||(27532317-27532376)
chr3 (308-383)||(494645-494722)
chr3 (308-400)||(20105992-20106083)
chr3 (315-368)||(20126414-20126467)
chr3 (325-400)||(3142158-3142234)
chr3 (326-358)||(3142380-3142412)
chr3 (333-389)||(25810419-25810475)
[»] chr8 (12 HSPs)
chr8 (327-400)||(34913635-34913708)
chr8 (318-362)||(25699301-25699345)
chr8 (326-400)||(13004036-13004108)
chr8 (294-400)||(42498982-42499089)
chr8 (292-400)||(36648068-36648177)
chr8 (320-384)||(6128112-6128176)
chr8 (333-431)||(25699650-25699748)
chr8 (332-389)||(34913778-34913835)
chr8 (12-48)||(12521009-12521045)
chr8 (295-400)||(25721726-25721833)
chr8 (308-389)||(36647432-36647515)
chr8 (349-401)||(36647938-36647990)
[»] scaffold1609 (3 HSPs)
scaffold1609 (315-383)||(584-654)
scaffold1609 (330-400)||(251-320)
scaffold1609 (316-374)||(406-466)
[»] scaffold0028 (1 HSPs)
scaffold0028 (295-389)||(77439-77534)
[»] scaffold0636 (1 HSPs)
scaffold0636 (292-400)||(1121-1231)
[»] scaffold0013 (1 HSPs)
scaffold0013 (294-389)||(51160-51256)


Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-175; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 8 - 471
Target Start/End: Original strand, 41700597 - 41701065
Alignment:
Q  8 aaaaagagaatttcaaaggtttgtaacaaccaatttggttcgatacaaggcacacgagccgtgtgcctcaacgcacagattgtgctagtccttgaccttc 107  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  41700597 aaaaagagaatttcaaagatttgtaacaaccaatttggttcgatacaaggcacacgagtcgtgtgcctcaacgcacagattgtgctagtccttgacctta 41700696  T
Q  108 aaaattatgattcgtagttaggcacacataccaggtactaggatgcacgggtcgtgagccggccactgcccttttggaattgtttcaaattagtgttttt 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||      
T  41700697 aaaattatgattcgtagttaggcacacataccaggtactaggatgcacgggtcgtgagccagccactgcccttttgaaattgttttaaattagtgttt-- 41700794  T
Q  208 tatcatagaatttctagcctatcaatttgtagttattcgattttgtttac-ggttgtgtattcaagagatgaatgtgaatttctttgcaaatatttgacg 306  Q
     ||| || ||||| |||| |   ||||| ||| |||||||||||| |||  |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  41700795 -atcgtaaaatttttagcttggtaatttataggtattcgattttgcttattggttgtatattcaagagatgaatgtgaatttctttgcaaatatttgacg 41700893  T
Q  307 ttgttttccatataaaatcaaaatatttaatagaaacactaaattaatgttgatatg-ttgaaaatagttatgagttttcaaaactttctcatatggata 405  Q
    ||||||| |||||||||| ||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||     
T  41700894 ttgttttgcatataaaataaaaatatttaataaaaacactaaattaat-ttgatatgtttgaaaatagttatgagttttcaaaactttctcacatggatg 41700992  T
Q  406 tatgaaaaattgattcttc------atatatataagcacattagagtgtgacac-aatattgatcgaaacaaa 471  Q
    |||||||||||||||||||      ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41700993 tatgaaaaattgattcttcatatatatatatataagcacattagagtgtgacacaaatattgatcgaaacaaa 41701065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 477 - 610
Target Start/End: Original strand, 41701169 - 41701301
Alignment:
Q  477 ttctcatataaattatcannnnnnnccaatttcatttatccggtttctgcatgttatccttcgggtaattacctccattcctttttggaattgtttcaaa 576  Q
    ||||||||||||||||||       ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  41701169 ttctcatataaattatcatttttttccaatttcatttatccgatttctgcatgttatccttcgg-taattacctccattcctttttggaattgtttcaaa 41701267  T
Q  577 tcagcgtttttctgtttaccatctcttgtgttgt 610  Q
    ||||||||| ||||||||||||||||||||||||    
T  41701268 tcagcgtttctctgtttaccatctcttgtgttgt 41701301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 327 - 400
Target Start/End: Original strand, 24450600 - 24450673
Alignment:
Q  327 aaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    ||||||||||||||||||||| ||| |||||||||| || |||||||| |||||||||||||| ||| ||||||    
T  24450600 aaatatttaatagaaacactacattgatgttgatattttaaaaatagtcatgagttttcaaaattttatcatat 24450673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 374
Target Start/End: Original strand, 30930185 - 30930269
Alignment:
Q  292 tgcaaatatttgacgttgttttccatataaaatca--aaatatttaatagaaacactaaattaatgttgatatgttgaaaatagt 374  Q
    ||||||||||| | | |||||| |||||||||| |  ||||||||||||||||||||| |||||||||||||| || ||||||||    
T  30930185 tgcaaatatttaatggtgttttgcatataaaataataaaatatttaatagaaacactatattaatgttgatattttaaaaatagt 30930269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 308 - 400
Target Start/End: Complemental strand, 24548543 - 24548450
Alignment:
Q  308 tgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    |||||| |||||||||| ||||  ||||||||| |||||||| |||||| ||| ||| || ||||||||||||||||||||||| ||| ||||||    
T  24548543 tgttttgcatataaaataaaaagttatttaatataaacactacattaattttgttat-ttaaaaatagttatgagttttcaaaattttatcatat 24548450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 308 - 389
Target Start/End: Complemental strand, 28144012 - 28143928
Alignment:
Q  308 tgttttccatataaaatcaaaa---tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 389  Q
    |||||| |||||||||| ||||   ||||||||||||| |||| |||||||||||| | ||||||||||| |||||||| |||||    
T  28144012 tgttttacatataaaataaaaaagatatttaatagaaaaactacattaatgttgattttttgaaaatagtgatgagtttccaaaa 28143928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 384
Target Start/End: Original strand, 45002376 - 45002433
Alignment:
Q  326 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagtttt 384  Q
    |||||||||||| |||||||||||||||||||| ||| ||  |||||||||||||||||    
T  45002376 aaaatatttaattgaaacactaaattaatgttggtat-tttcaaatagttatgagtttt 45002433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 349 - 389
Target Start/End: Original strand, 3912528 - 3912568
Alignment:
Q  349 attaatgttgatatgttgaaaatagttatgagttttcaaaa 389  Q
    |||||||||||||| ||||||||||| ||||||||||||||    
T  3912528 attaatgttgatattttgaaaatagtaatgagttttcaaaa 3912568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 400
Target Start/End: Original strand, 24450980 - 24451074
Alignment:
Q  308 tgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    |||||| |||||||||| ||||  ||||||||||| | |||| |||  |||||| || |||||||||||||||| ||| ||||| ||| ||||||    
T  24450980 tgttttgcatataaaataaaaagttatttaatagacaaactacattggtgttgaaattttgaaaatagttatgactttccaaaattttatcatat 24451074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 383
Target Start/End: Original strand, 630171 - 630224
Alignment:
Q  330 tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttt 383  Q
    ||||||| |||||||||| |||||||||||||  ||||||||||| | ||||||    
T  630171 tatttaagagaaacactatattaatgttgataatttgaaaatagtcacgagttt 630224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 349 - 389
Target Start/End: Original strand, 30930058 - 30930098
Alignment:
Q  349 attaatgttgatatgttgaaaatagttatgagttttcaaaa 389  Q
    |||||||||||||||||||||||||| || | |||||||||    
T  30930058 attaatgttgatatgttgaaaatagtcataaattttcaaaa 30930098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 308 - 400
Target Start/End: Complemental strand, 33536764 - 33536670
Alignment:
Q  308 tgttttccatataaaatcaaaatat--ttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    |||||| |||||||||| ||||| |  ||||||||||||||| |||||||||||||| ||||||||||| | |||||||||||| ||| ||||||    
T  33536764 tgttttgcatataaaataaaaatttaattaatagaaacactatattaatgttgatattttgaaaatagtcacgagttttcaaaattttatcatat 33536670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 292 - 389
Target Start/End: Original strand, 20561579 - 20561678
Alignment:
Q  292 tgcaaatatttgacgttgttttccatataaaatcaaa--atatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 389  Q
    ||||||||||| ||| |||||| |||||||||| | |  |||||||  ||||||||||||||||| ||||||| ||||||||||| ||||||||| ||||    
T  20561579 tgcaaatatttaacggtgttttgcatataaaataatagaatatttataagaaacactaaattaatattgatattttgaaaatagtcatgagtttttaaaa 20561678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 389
Target Start/End: Complemental strand, 2486473 - 2486377
Alignment:
Q  295 aaatatttgacgttgttttccatataaaatcaaaat--atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 389  Q
    |||||||| ||||| |||| ||| |||||| |||||  || |||||||||||||| |||||| || |||| || |||||||||||||||||||||||    
T  2486473 aaatatttaacgttattttgcatgtaaaattaaaatttatctaatagaaacactacattaattttaatattttaaaaatagttatgagttttcaaaa 2486377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 400
Target Start/End: Original strand, 21665628 - 21665737
Alignment:
Q  292 tgcaaatatttgacgttgttttccatataaaatcaaaa-tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaac 390  Q
    ||||||||||| | | ||||||  ||||||||| |||| |||||||||||||||||| ||| |||||||||| || |||||||| | ||||||| ||||     
T  21665628 tgcaaatatttaatggtgttttgtatataaaataaaaaatatttaatagaaacactatatttatgttgatattttaaaaatagtcacgagtttttaaaag 21665727  T
Q  391 tttctcatat 400  Q
    ||| ||||||    
T  21665728 tttatcatat 21665737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 329 - 389
Target Start/End: Complemental strand, 8237907 - 8237847
Alignment:
Q  329 atatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 389  Q
    |||||||| ||||||| || |||||||||||||| ||||||||||| ||||||||||||||    
T  8237907 atatttaagagaaacattatattaatgttgatattttgaaaatagtcatgagttttcaaaa 8237847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 326 - 398
Target Start/End: Original strand, 44603916 - 44603988
Alignment:
Q  326 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcat 398  Q
    ||||||| ||||||||||||||||||||||||||||| || |||||||| | || ||||||||| ||| ||||    
T  44603916 aaaatatataatagaaacactaaattaatgttgatatttttaaaatagtcacgatttttcaaaattttatcat 44603988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 389
Target Start/End: Original strand, 1502224 - 1502287
Alignment:
Q  326 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 389  Q
    |||||| || ||||||||| |||||||||||| |||| ||||||||||| ||||||||||||||    
T  1502224 aaaataattgatagaaacaataaattaatgtttatattttgaaaatagtgatgagttttcaaaa 1502287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 389
Target Start/End: Complemental strand, 2739874 - 2739815
Alignment:
Q  330 tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 389  Q
    ||||||||||| |||||| |||||||||||||| ||||||||||| || |||||||||||    
T  2739874 tatttaatagacacactacattaatgttgatattttgaaaatagtcataagttttcaaaa 2739815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 319 - 389
Target Start/End: Complemental strand, 25480556 - 25480486
Alignment:
Q  319 taaaatcaaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 389  Q
    |||||| | |||||||||||||||||||| |||||||||||||| || |||||| | ||||||||| ||||    
T  25480556 taaaataataatatttaatagaaacactacattaatgttgatattttaaaaataatcatgagtttttaaaa 25480486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 389
Target Start/End: Original strand, 18869528 - 18869588
Alignment:
Q  329 atatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 389  Q
    |||||||||||||||| || |||||||||||||| ||||||||| | | ||||||||||||    
T  18869528 atatttaatagaaacagtatattaatgttgatattttgaaaataatcacgagttttcaaaa 18869588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 374
Target Start/End: Original strand, 44606952 - 44607000
Alignment:
Q  326 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagt 374  Q
    ||||||| ||||||||||||||||||||||||||||| || ||||||||    
T  44606952 aaaatatctaatagaaacactaaattaatgttgatattttaaaaatagt 44607000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 333 - 400
Target Start/End: Original strand, 18869739 - 18869806
Alignment:
Q  333 ttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    |||||| |||||| | ||||||||||||| |||||||| | |||||||||||||||| ||| ||||||    
T  18869739 ttaatacaaacacaacattaatgttgataggttgaaaacaattatgagttttcaaaattttatcatat 18869806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 389
Target Start/End: Complemental strand, 8669668 - 8669610
Alignment:
Q  331 atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 389  Q
    ||||||||||||||||| ||||||||| |||| ||||||| |||  |||||||||||||    
T  8669668 atttaatagaaacactacattaatgttcatattttgaaaacagtcgtgagttttcaaaa 8669610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 389
Target Start/End: Complemental strand, 9669517 - 9669436
Alignment:
Q  310 ttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 389  Q
    |||| |||||||||| ||||  |||||||||||| ||||| || ||| ||||||| ||||||||||| ||||||||| ||||    
T  9669517 ttttacatataaaataaaaagttatttaatagaagcactacataaattttgatattttgaaaatagtcatgagtttttaaaa 9669436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 331 - 400
Target Start/End: Complemental strand, 8669807 - 8669738
Alignment:
Q  331 atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    ||||||||||||||||| ||||||||| |||| ||||||| |||   |||||||||||| ||| ||||||    
T  8669807 atttaatagaaacactacattaatgttcatattttgaaaacagtcgcgagttttcaaaattttatcatat 8669738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 331 - 400
Target Start/End: Complemental strand, 8669946 - 8669877
Alignment:
Q  331 atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    ||||||||||||||||| ||||||||| |||| ||||||| |||   |||||||||||| ||| ||||||    
T  8669946 atttaatagaaacactacattaatgttcatattttgaaaacagtcgcgagttttcaaaattttatcatat 8669877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 308 - 389
Target Start/End: Complemental strand, 29529714 - 29529633
Alignment:
Q  308 tgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 389  Q
    |||||| |||||||||| ||||  |||||||||||||||||| |||||| |||  || ||||||||||| ||||||||| ||||    
T  29529714 tgttttgcatataaaataaaaagttatttaatagaaacactacattaattttg--attttgaaaatagtgatgagtttttaaaa 29529633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 332 - 400
Target Start/End: Complemental strand, 24865272 - 24865204
Alignment:
Q  332 tttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    ||||||| |||||||| |||||| ||||||| ||||||||||| |||| |||| |||| ||| ||||||    
T  24865272 tttaataaaaacactacattaattttgatattttgaaaatagtcatgaatttttaaaattttatcatat 24865204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 295 - 400
Target Start/End: Complemental strand, 33536961 - 33536854
Alignment:
Q  295 aaatatttgacgttgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactt 392  Q
    |||||||| ||  ||||||  ||||||||| ||||  ||||||||||| ||| || ||| |||||||||| ||||||||||| | | |||||||||| ||    
T  33536961 aaatatttaacaatgttttaaatataaaataaaaaattatttaatagacacaatacattcatgttgatattttgaaaatagtcacgtgttttcaaaattt 33536862  T
Q  393 tctcatat 400  Q
    | ||||||    
T  33536861 tatcatat 33536854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 389
Target Start/End: Complemental strand, 3743185 - 3743122
Alignment:
Q  326 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 389  Q
    ||||||||||||||||||| || ||| ||||| |||| || |||||||| | ||||||||||||    
T  3743185 aaaatatttaatagaaacattatattgatgtttatattttaaaaatagtcacgagttttcaaaa 3743122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 400
Target Start/End: Complemental strand, 9669742 - 9669649
Alignment:
Q  308 tgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    |||||| |||||||||| |||   ||||||||||||||||||  ||||| || |||| ||||||||||| |||||||||||| | ||| ||||||    
T  9669742 tgttttgcatataaaataaaacgttatttaatagaaacactaccttaatttt-atattttgaaaatagtcatgagttttcaatattttatcatat 9669649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 398
Target Start/End: Complemental strand, 9677130 - 9677059
Alignment:
Q  327 aaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcat 398  Q
    ||||||||| |||||||| || |||||||||||||| || ||||||||||| || ||| |||| ||| ||||    
T  9677130 aaatatttattagaaacattatattaatgttgatatttttaaaatagttattaggttttaaaattttatcat 9677059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 389
Target Start/End: Original strand, 21666244 - 21666303
Alignment:
Q  330 tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 389  Q
    ||||||||||||| |||| |||||| || |||| ||||||||||| |||| |||||||||    
T  21666244 tatttaatagaaatactacattaattttaatattttgaaaatagtcatgaattttcaaaa 21666303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 400
Target Start/End: Complemental strand, 28645028 - 28644942
Alignment:
Q  316 atataaaatcaaaat--atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    ||||||||| |||||  |||||||||| |||||| ||||||||| |||| ||||||||||| | ||||||  |||| ||| ||||||    
T  28645028 atataaaataaaaatttatttaatagacacactacattaatgttaatattttgaaaatagtcacgagtttctaaaattttatcatat 28644942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 400
Target Start/End: Original strand, 21666075 - 21666132
Alignment:
Q  343 cactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    ||||| ||||| ||| |||| ||||||||||| |||||||||||||| ||| ||||||    
T  21666075 cactacattaaggtttatattttgaaaatagtcatgagttttcaaaattttatcatat 21666132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 400
Target Start/End: Original strand, 24718992 - 24719084
Alignment:
Q  310 ttttccatataaaatcaaaatat--ttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    |||| |||||||||| ||||| |  |||||||||||||||  ||||||||||||| || |||||| | || | ||||||||| ||| ||||||    
T  24718992 ttttacatataaaataaaaatttaattaatagaaacactacgttaatgttgatattttaaaaatactcataaattttcaaaattttatcatat 24719084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 383
Target Start/End: Original strand, 24719213 - 24719266
Alignment:
Q  330 tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttt 383  Q
    ||||||||||| |||||| |||||| ||||||| ||||||||||| | ||||||    
T  24719213 tatttaatagacacactacattaatattgatattttgaaaatagtgacgagttt 24719266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 387
Target Start/End: Complemental strand, 28645352 - 28645295
Alignment:
Q  330 tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaa 387  Q
    |||||||||||||||||| ||| ||||| |||| || |||||| | ||||||||||||    
T  28645352 tatttaatagaaacactacattgatgtttatatattaaaaataatcatgagttttcaa 28645295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 356 - 400
Target Start/End: Complemental strand, 14657378 - 14657334
Alignment:
Q  356 ttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    |||| |||||||||||||| ||||||||||||||| || ||||||    
T  14657378 ttgacatgttgaaaatagtcatgagttttcaaaacattatcatat 14657334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 308 - 389
Target Start/End: Original strand, 29239370 - 29239453
Alignment:
Q  308 tgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 389  Q
    |||||| ||| |||||| ||||  ||||||||| |||||||| ||| ||||||||   ||||||||||| ||| ||||||||||    
T  29239370 tgttttgcatgtaaaataaaaagttatttaataaaaacactacattgatgttgattatttgaaaatagtcatgcgttttcaaaa 29239453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 329 - 400
Target Start/End: Original strand, 35144569 - 35144643
Alignment:
Q  329 atatttaatagaaacactaaattaatgttg---atatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    |||||||||| |||| ||| ||||||||||   |||| || ||||| || |||||||||||||| ||||||||||    
T  35144569 atatttaatataaacgctatattaatgttgttgatattttaaaaattgtcatgagttttcaaaattttctcatat 35144643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 329 - 389
Target Start/End: Complemental strand, 42586274 - 42586214
Alignment:
Q  329 atatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 389  Q
    ||||||||||| ||||||| ||| |||||||||| ||||||||| | | |||||| |||||    
T  42586274 atatttaatagtaacactacattgatgttgatattttgaaaataatcacgagtttccaaaa 42586214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 326 - 400
Target Start/End: Original strand, 25051198 - 25051272
Alignment:
Q  326 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    |||||||||||||||||||||| |||||| ||||||| |||||||||||||| ||||||| ||| ||| ||||||    
T  25051198 aaaatatttaatagaaacactatattaatattgatattttgaaaatagttataagttttccaaattttatcatat 25051272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 400
Target Start/End: Original strand, 25051331 - 25051440
Alignment:
Q  292 tgcaaatatttgacgttgttttccatataaaatca-aaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaac 390  Q
    |||||| |||| ||| |||| | |||||||||| | |||||||||||||||| | || |||||||||||||| || |||||| | ||||||||||||||     
T  25051331 tgcaaacatttaacggtgttatacatataaaataacaaatatttaatagaaataatatattaatgttgatattttaaaaataatcatgagttttcaaaat 25051430  T
Q  391 tttctcatat 400  Q
    ||| ||||||    
T  25051431 tttatcatat 25051440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 326 - 400
Target Start/End: Original strand, 25051038 - 25051112
Alignment:
Q  326 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    ||||||||| ||||||||| || ||||||  |||||| |||||||| ||||||||||||||||| ||| ||||||    
T  25051038 aaaatatttgatagaaacattacattaatactgatattttgaaaatcgttatgagttttcaaaattttatcatat 25051112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 295 - 389
Target Start/End: Complemental strand, 37996767 - 37996671
Alignment:
Q  295 aaatatttgacgttgttttccatataaaatcaaaat--atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 389  Q
    |||||||| | | ||||||  ||||||||| |||||  |||||| | |||||||| |||||||||||||| || |||||||| ||||||||||||||    
T  37996767 aaatatttaatggtgttttaaatataaaatgaaaatttatttaacaaaaacactacattaatgttgatattttaaaaatagtcatgagttttcaaaa 37996671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 398
Target Start/End: Original strand, 11132268 - 11132336
Alignment:
Q  330 tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcat 398  Q
    ||||||| ||||||||||  || |||||||||| ||||||||||| |||||||||||||| ||| ||||    
T  11132268 tatttaaaagaaacactaccttgatgttgatattttgaaaatagtcatgagttttcaaaattttatcat 11132336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 326 - 389
Target Start/End: Original strand, 32668835 - 32668898
Alignment:
Q  326 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 389  Q
    ||||||||||||||||| |||| ||||||||||| || ||||||||||| |  |||||||||||    
T  32668835 aaaatatttaatagaaaaactacattaatgttgaaattttgaaaatagtcaatagttttcaaaa 32668898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 389
Target Start/End: Complemental strand, 13540541 - 13540460
Alignment:
Q  310 ttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 389  Q
    |||| |||||||||| ||||  |||||||||||| ||||| || ||| ||||||| ||||||||||| ||||||||| ||||    
T  13540541 ttttacatataaaataaaaagttatttaatagaagcactacataaattttgatattttgaaaatagtcatgagtttttaaaa 13540460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 293 - 383
Target Start/End: Original strand, 19583368 - 19583457
Alignment:
Q  293 gcaaatatttgacgttgttttccatataaaatcaaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttt 383  Q
    |||||||||||||| |||||| ||| |||||  | | |||| ||||||||||||| |||| ||| ||||| || |||||||||||||||||    
T  19583368 gcaaatatttgacggtgttttgcatgtaaaaagata-tattcaatagaaacactacattactgtcgatattttaaaaatagttatgagttt 19583457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 308 - 381
Target Start/End: Complemental strand, 16177362 - 16177287
Alignment:
Q  308 tgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagt 381  Q
    |||||| | |||||||||||||  ||||||||| |||||||| |||||||||  ||| ||||||||||| ||||||    
T  16177362 tgttttgcttataaaatcaaaaattatttaataaaaacactacattaatgtttttattttgaaaatagtcatgagt 16177287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 308 - 400
Target Start/End: Original strand, 34852996 - 34853088
Alignment:
Q  308 tgttttccatataaaatcaaaat--atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    |||||| |||||||||| |||||  |||||||||||||||||||||||| |||  || |||||| |||| || |||||| |||| ||| ||||||    
T  34852996 tgttttgcatataaaataaaaatttatttaatagaaacactaaattaattttg--attttgaaagtagtcataagtttttaaaattttatcatat 34853088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 400
Target Start/End: Complemental strand, 13540766 - 13540673
Alignment:
Q  308 tgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    |||||| |||||||||| |||   ||||||||||||||||||  ||||| || |||| ||||||||||| |||||||||||| | ||| ||||||    
T  13540766 tgttttgcatataaaataaaacgttatttaatagaaacactaccttaatttt-atattttgaaaatagtcatgagttttcaatattttatcatat 13540673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 398
Target Start/End: Complemental strand, 13542074 - 13542003
Alignment:
Q  327 aaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcat 398  Q
    ||||||||| |||||||| || |||||||||||||| || ||||||||||| || ||| |||| ||| ||||    
T  13542074 aaatatttattagaaacattatattaatgttgatatttttaaaatagttattaggttttaaaattttatcat 13542003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 333 - 383
Target Start/End: Original strand, 19585334 - 19585384
Alignment:
Q  333 ttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttt 383  Q
    |||| |||||||||| |||||||||||||| ||||||||||| || |||||    
T  19585334 ttaacagaaacactacattaatgttgatattttgaaaatagtcattagttt 19585384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 400
Target Start/End: Complemental strand, 25447047 - 25446942
Alignment:
Q  295 aaatatttgacgttgttttccatataaaatcaaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttc 394  Q
    |||||||| ||| ||||||  ||||||  | ||||||||||||| | |||||| ||| |||||||||| || |||||| | ||||||||  |||| |||     
T  25447047 aaatatttaacggtgttttaaatataacttaaaaatatttaataaacacactatatttatgttgatattttaaaaataatcatgagtttctaaaatttta 25446948  T
Q  395 tcatat 400  Q
    ||||||    
T  25446947 tcatat 25446942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 341 - 389
Target Start/End: Original strand, 10326111 - 10326159
Alignment:
Q  341 aacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 389  Q
    |||| ||||||||||||||||| || |||||||| | ||||||||||||    
T  10326111 aacattaaattaatgttgatatttttaaaatagtcaagagttttcaaaa 10326159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 316 - 400
Target Start/End: Complemental strand, 43761433 - 43761347
Alignment:
Q  316 atataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    ||||||||| ||||  |||||||||||||||||| ||| |||||||||| ||||||||||||||||||||  |||| ||| ||||||    
T  43761433 atataaaataaaaagttatttaatagaaacactacattgatgttgatattttgaaaatagttatgagtttctaaaattttatcatat 43761347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 327 - 400
Target Start/End: Original strand, 3592626 - 3592699
Alignment:
Q  327 aaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    |||||||||||| |||||||| ||||||||| |||| ||||||||||| | |||||||||||| ||| ||||||    
T  3592626 aaatatttaataaaaacactacattaatgttaatattttgaaaatagtcacgagttttcaaaattttatcatat 3592699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 295 - 389
Target Start/End: Original strand, 34903612 - 34903708
Alignment:
Q  295 aaatatttgacgttgttttccatataaaatcaaaat--atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 389  Q
    |||||||| ||| ||||||  ||||||||| |||||  |||||||||| |||||| |||||||||||||| || ||||||| || |||||| |||||    
T  34903612 aaatatttaacggtgttttaaatataaaataaaaatttatttaatagacacactacattaatgttgatattttaaaaataggtaagagtttccaaaa 34903708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 389
Target Start/End: Complemental strand, 39313144 - 39313088
Alignment:
Q  333 ttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 389  Q
    ||||||||||||||  |||||| ||||||| ||||||||||||| ||||||||||||    
T  39313144 ttaatagaaacactgcattaatcttgatattttgaaaatagttacgagttttcaaaa 39313088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 414
Target Start/End: Original strand, 3591774 - 3591840
Alignment:
Q  349 attaatgttgatatgttgaaaatagtt-atgagttttcaaaactttctcatatggatatatgaaaaa 414  Q
    ||||| |||||||| |||||||||||  ||||||||||||||||||||||||| || |||| |||||    
T  3591774 attaacgttgatatcttgaaaatagtccatgagttttcaaaactttctcatattgaaatattaaaaa 3591840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 388
Target Start/End: Original strand, 11080645 - 11080707
Alignment:
Q  326 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaa 388  Q
    ||||||||||| |||||||||  |||||||||||||  ||||||||||| |||| ||||||||    
T  11080645 aaaatatttaaaagaaacactgtattaatgttgataatttgaaaatagtgatgatttttcaaa 11080707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 383
Target Start/End: Original strand, 15198750 - 15198843
Alignment:
Q  292 tgcaaatatttgacgttgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttt 383  Q
    ||||||||||  ||| |||||| |||||||||| ||||  |||||||||||||||||| ||||||||  |||| |||| |||| | ||||||||    
T  15198750 tgcaaatattgaacggtgttttgcatataaaataaaaagttatttaatagaaacactatattaatgtatatattttgacaatattaatgagttt 15198843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 400
Target Start/End: Complemental strand, 16682169 - 16682063
Alignment:
Q  295 aaatatttgacgttgttttccatataaaat-caaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaacttt 393  Q
    |||||||| ||| ||||||  |||| |||| |||||||||| |||||||||||| |||| |||  |||| ||||||||||| ||||  |||||||| |||    
T  16682169 aaatatttaacggtgttttgaatattaaatacaaaatatttgatagaaacactacattactgtacatattttgaaaatagtcatgaactttcaaaatttt 16682070  T
Q  394 ctcatat 400  Q
     ||||||    
T  16682069 atcatat 16682063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 327 - 400
Target Start/End: Complemental strand, 15913373 - 15913300
Alignment:
Q  327 aaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    |||||||||||| || ||||| |||||||||||||| |||||| || || |||||||| |||| ||| ||||||    
T  15913373 aaatatttaataaaatcactatattaatgttgatattttgaaagtaattttgagtttttaaaattttatcatat 15913300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 316 - 398
Target Start/End: Complemental strand, 32035026 - 32034942
Alignment:
Q  316 atataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcat 398  Q
    ||||||||| ||||  |||||||||||| ||||| |||||| ||||||| || |||||||| | |||||||||||| ||| ||||    
T  32035026 atataaaatgaaaagttatttaatagaagcactacattaattttgatattttaaaaatagtcacgagttttcaaaattttatcat 32034942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 400
Target Start/End: Complemental strand, 16086967 - 16086900
Alignment:
Q  333 ttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    |||||||||||||||   |  ||||||||||||||||||||| | ||| |||||||||| ||||||||    
T  16086967 ttaatagaaacactaccattgtgttgatatgttgaaaatagtcacgagctttcaaaactatctcatat 16086900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 400
Target Start/End: Original strand, 39157547 - 39157598
Alignment:
Q  349 attaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    |||||| ||||||| |||||||||||||| ||||||||||| ||| ||||||    
T  39157547 attaattttgatattttgaaaatagttataagttttcaaaattttatcatat 39157598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 389
Target Start/End: Complemental strand, 39313032 - 39312935
Alignment:
Q  296 aatatttgacgttgttttccatataaaatcaaaat--atttaatagaaacactaaattaatgttg--atatgttgaaaatagttatgagttttcaaaa 389  Q
    ||||||| ||| ||||||  ||||||||| |||||  |||||||||| |||||| ||||||||||  || | ||||||||||| |||||||| |||||    
T  39313032 aatatttaacggtgttttaaatataaaataaaaatttatttaatagacacactacattaatgttgaaattttttgaaaatagtcatgagtttccaaaa 39312935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 388
Target Start/End: Original strand, 15121826 - 15121887
Alignment:
Q  326 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaa 388  Q
    ||||||||||| |||||||||| |||| ||||||||| |||||||  |||| |||||||||||    
T  15121826 aaaatatttaacagaaacactatattattgttgatat-ttgaaaaatgttacgagttttcaaa 15121887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 388
Target Start/End: Original strand, 15146014 - 15146075
Alignment:
Q  326 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaa 388  Q
    ||||||||||| |||||||||| |||| ||||||||| |||||||  |||| |||||||||||    
T  15146014 aaaatatttaacagaaacactatattattgttgatat-ttgaaaaatgttacgagttttcaaa 15146075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 330 - 400
Target Start/End: Original strand, 46022945 - 46023015
Alignment:
Q  330 tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    ||||||| |||||||||| |||||||||||||  ||||||||||| | |||||| || || ||| ||||||    
T  46022945 tatttaagagaaacactacattaatgttgataatttgaaaatagtcacgagtttccacaattttatcatat 46023015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 372
Target Start/End: Original strand, 3591906 - 3591970
Alignment:
Q  310 ttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaata 372  Q
    |||| |||||||||| ||||  |||||||||||||||| | |||||||||||||| || ||||||    
T  3591906 ttttgcatataaaatgaaaaattatttaatagaaacacaacattaatgttgatatcttaaaaata 3591970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 383
Target Start/End: Complemental strand, 48994950 - 48994897
Alignment:
Q  330 tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttt 383  Q
    ||||||| |||||||||| |||||||||||||  ||||||||||| | ||||||    
T  48994950 tatttaagagaaacactacattaatgttgataatttgaaaatagtcacgagttt 48994897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 307 - 400
Target Start/End: Original strand, 15114838 - 15114933
Alignment:
Q  307 ttgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    ||||||| |||||||||| ||||  |||||| ||||||||||| | | ||||| | || |||||||||||  ||||||||||| | ||| ||||||    
T  15114838 ttgttttgcatataaaataaaaagttatttattagaaacactacaatgatgtttacattttgaaaatagtcttgagttttcaataatttatcatat 15114933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 307 - 400
Target Start/End: Original strand, 15123048 - 15123143
Alignment:
Q  307 ttgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    ||||||| |||||||||| || |  |||||| ||||||||||| | | ||||| | || ||||||||||| |||||||||||| | ||| ||||||    
T  15123048 ttgttttgcatataaaataaacagttatttattagaaacactacaatgatgtttacatcttgaaaatagtcatgagttttcaataatttatcatat 15123143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 307 - 400
Target Start/End: Original strand, 15139354 - 15139449
Alignment:
Q  307 ttgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    ||||||| |||||||||| ||||  |||||| ||||||||||| | | ||||| | || |||||||||||  ||||||||||| | ||| ||||||    
T  15139354 ttgttttgcatataaaataaaaagttatttattagaaacactacaatgatgtttacattttgaaaatagtcttgagttttcaataatttatcatat 15139449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 307 - 400
Target Start/End: Original strand, 15147236 - 15147331
Alignment:
Q  307 ttgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    ||||||| |||||||||| || |  |||||| ||||||||||| | | ||||| | || ||||||||||| |||||||||||| | ||| ||||||    
T  15147236 ttgttttgcatataaaataaacagttatttattagaaacactacaatgatgtttacatcttgaaaatagtcatgagttttcaataatttatcatat 15147331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 296 - 389
Target Start/End: Complemental strand, 31795038 - 31794944
Alignment:
Q  296 aatatttgacgttgttttccatataaaatcaaaa-tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 389  Q
    ||||||| ||| |||||| |||||||||| |||| ||||||||| || ||||| |||||||||||||| ||||||||||| | ||||||| ||||    
T  31795038 aatatttaacggtgttttacatataaaataaaaaatatttaataaaagcactacattaatgttgatatattgaaaatagtcacgagtttttaaaa 31794944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 332 - 400
Target Start/End: Complemental strand, 11959934 - 11959866
Alignment:
Q  332 tttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    |||||||||||||||| |||||||||||||| || |||||| | |||||||||||||| ||| ||||||    
T  11959934 tttaatagaaacactacattaatgttgatattttaaaaataataatgagttttcaaaaatttatcatat 11959866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 295 - 383
Target Start/End: Original strand, 5089615 - 5089705
Alignment:
Q  295 aaatatttgacgttgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttt 383  Q
    |||||||  ||| |||||| |||||||| | ||||  |||||||||||||||||| |||||||||||||| ||||||||| | ||||||||    
T  5089615 aaatattgaacggtgttttgcatataaagtaaaaagttatttaatagaaacactacattaatgttgatattttgaaaataatcatgagttt 5089705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 413
Target Start/End: Complemental strand, 11854295 - 11854208
Alignment:
Q  326 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatatggatatatgaaaa 413  Q
    ||||||||||| |||||||||| ||||| |||||| | || |||||| | |||||||||||||| ||| |||||| |||| |||||||    
T  11854295 aaaatatttaacagaaacactacattaaagttgatcttttaaaaataataatgagttttcaaaattttatcatatcgatacatgaaaa 11854208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 372
Target Start/End: Original strand, 15555445 - 15555501
Alignment:
Q  316 atataaaatcaaaatatttaatagaaacactaaattaatgttgatatgttgaaaata 372  Q
    ||||||||| |||  ||||||||||||||||| |||||||||||||| |||||||||    
T  15555445 atataaaataaaataatttaatagaaacactatattaatgttgatattttgaaaata 15555501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 333 - 400
Target Start/End: Original strand, 2999472 - 2999539
Alignment:
Q  333 ttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    ||||||||||||||| ||| |||||||||| ||||||||||| |||| |||| |||| ||| ||||||    
T  2999472 ttaatagaaacactacattgatgttgatattttgaaaatagtcatgactttttaaaattttatcatat 2999539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 326 - 389
Target Start/End: Original strand, 15554430 - 15554493
Alignment:
Q  326 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 389  Q
    ||||||||||||||||| |||| |||||||||||||| ||||||||  | ||||||||| ||||    
T  15554430 aaaatatttaatagaaatactatattaatgttgatattttgaaaatgatcatgagtttttaaaa 15554493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 295 - 408
Target Start/End: Original strand, 15556434 - 15556547
Alignment:
Q  295 aaatatttgacgttgttttccatataaaatcaaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttc 394  Q
    |||||||| ||| | |||| | |||||||| |||| ||||   ||||| |||| ||||||||||||||||| |||| | | ||||||||| |||| |||     
T  15556434 aaatatttaacggtattttacttataaaataaaaaaatttctcagaaaaactacattaatgttgatatgttaaaaacaatcatgagttttaaaaaattta 15556533  T
Q  395 tcatatggatatat 408  Q
    |||||| |||||||    
T  15556534 tcatatcgatatat 15556547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 335 - 394
Target Start/End: Original strand, 15554776 - 15554836
Alignment:
Q  335 aatagaaacactaaattaatgttgatatgtt-gaaaatagttatgagttttcaaaactttc 394  Q
    ||||||||||||| |||||||||||||||||  |||||| | |||| ||||||||||||||    
T  15554776 aatagaaacactacattaatgttgatatgttaaaaaataataatgacttttcaaaactttc 15554836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 326 - 374
Target Start/End: Original strand, 15555126 - 15555174
Alignment:
Q  326 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagt 374  Q
    |||||| |||||| |||||||| |||||||||||||| |||||||||||    
T  15555126 aaaatacttaataaaaacactacattaatgttgatattttgaaaatagt 15555174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 292 - 379
Target Start/End: Complemental strand, 31794860 - 31794770
Alignment:
Q  292 tgcaaatatttgacgttgttttccatataaaatca---aaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatga 379  Q
    |||||||| || ||||||||||||||||||||| |   ||| | ||||| ||||||||| |||||||| ||||| ||||| ||||| ||||    
T  31794860 tgcaaatagttaacgttgttttccatataaaataaaataaaaaattaattgaaacactacattaatgtcgatattttgaatatagtcatga 31794770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 387
Target Start/End: Original strand, 15555933 - 15555988
Alignment:
Q  332 tttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaa 387  Q
    |||||||||||||||| |||| ||||||||| || |||||||||| ||||| ||||    
T  15555933 tttaatagaaacactacattagtgttgatattttcaaaatagttacgagttctcaa 15555988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 333 - 379
Target Start/End: Original strand, 15556292 - 15556338
Alignment:
Q  333 ttaatagaaacactaaattaatgttgatatgttgaaaatagttatga 379  Q
    ||||||||||||| | |||||||||||||| ||||||||||| ||||    
T  15556292 ttaatagaaacacaacattaatgttgatattttgaaaatagtcatga 15556338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 400
Target Start/End: Original strand, 15558795 - 15558868
Alignment:
Q  326 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    |||||||||| || ||||||||||||||||||||||| || |||| ||| |||| ||||| ||| ||| ||||||    
T  15558795 aaaatattta-tataaacactaaattaatgttgatattttaaaaacagtcatgaattttctaaattttatcatat 15558868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 294 - 389
Target Start/End: Original strand, 4979870 - 4979964
Alignment:
Q  294 caaatatttgacgttgttttccatataaaatcaaaa-tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 389  Q
    ||||||||| |||| |||||  ||||||||| |||| ||||||||| ||| | || |||||||| ||||| ||||||||||| | ||||||||||||    
T  4979870 caaatatttaacgt-gttttgtatataaaataaaaaatatttaataaaaaaa-tacattaatgtcgatattttgaaaatagtcacgagttttcaaaa 4979964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 330 - 400
Target Start/End: Complemental strand, 7566188 - 7566121
Alignment:
Q  330 tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    |||||||||||||||||| |||||| ||   || ||||||||||| ||||||||| |||| ||| ||||||    
T  7566188 tatttaatagaaacactacattaatttt---attttgaaaatagtcatgagtttttaaaattttatcatat 7566121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 308 - 389
Target Start/End: Original strand, 31480956 - 31481039
Alignment:
Q  308 tgttttccatataaaat--caaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 389  Q
    |||||| ||||||||||  |||| ||||||||||||||| || || ||| || |||| | ||||||||| | ||||||||||||    
T  31480956 tgttttgcatataaaataacaaagtatttaatagaaacattacatcaatattaatatttagaaaatagtaacgagttttcaaaa 31481039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 350 - 400
Target Start/End: Original strand, 40373650 - 40373700
Alignment:
Q  350 ttaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  40373650 ttaatgttgatatgttgaaaatagtcataagttttcaaaactttctcatat 40373700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 292 - 379
Target Start/End: Original strand, 41912815 - 41912904
Alignment:
Q  292 tgcaaatatttgacgttgttttccatataaaat--caaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatga 379  Q
    ||||||||||| ||| |||||| ||||||||||  ||| ||||||| || |||||||| |||||||||||||| ||||||||||| ||||    
T  41912815 tgcaaatatttaacggtgttttgcatataaaatgacaacatatttattaaaaacactatattaatgttgatattttgaaaatagtcatga 41912904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 292 - 375
Target Start/End: Original strand, 26657521 - 26657605
Alignment:
Q  292 tgcaaatatttgacgttgttttccatataaaatcaaaat-atttaatagaaacactaaattaatgttgatatgttgaaaatagtt 375  Q
    ||||||||||| ||| ||||||  ||||||||| ||||| ||||||||||||||||| || |||||||||||  |||||||||||    
T  26657521 tgcaaatatttaacggtgttttaaatataaaataaaaattatttaatagaaacactacatgaatgttgatattctgaaaatagtt 26657605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 292 - 375
Target Start/End: Original strand, 26929109 - 26929193
Alignment:
Q  292 tgcaaatatttgacgttgttttccatataaaatcaaaat-atttaatagaaacactaaattaatgttgatatgttgaaaatagtt 375  Q
    ||||||||||| ||| ||||||  ||||||||| ||||| ||||||||||||||||| || |||||||||||  |||||||||||    
T  26929109 tgcaaatatttaacggtgttttaaatataaaataaaaattatttaatagaaacactacatgaatgttgatattctgaaaatagtt 26929193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 387
Target Start/End: Original strand, 3419995 - 3420091
Alignment:
Q  292 tgcaaatatttgacgttgttttccatataaa-atcaaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaa 387  Q
    ||||||||||| ||| |||||| |||| ||| | |||||||||||||| ||||| || | |||||||||||| ||||||||||| || | |||||||    
T  3419995 tgcaaatatttaacggtgttttgcatacaaataacaaaatatttaatacaaacattatactaatgttgatattttgaaaatagtcataaattttcaa 3420091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 333 - 400
Target Start/End: Original strand, 17762113 - 17762180
Alignment:
Q  333 ttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    |||||||||| || | |||||||||||||| ||||||||||| | |||||||||||| ||| ||||||    
T  17762113 ttaatagaaagacaacattaatgttgatattttgaaaatagtcacgagttttcaaaattttatcatat 17762180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 389
Target Start/End: Original strand, 1832902 - 1832982
Alignment:
Q  308 tgttttccatataaaatcaaaa-tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 389  Q
    ||||||||||||||||| |||| |||||||||  |||||| | ||| ||||||||| || |||||||||||||||||||||||    
T  1832902 tgttttccatataaaataaaaaatatttaataagaacactta-ttagtgttgatatttt-aaaatagttatgagttttcaaaa 1832982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 400
Target Start/End: Complemental strand, 37447803 - 37447741
Alignment:
Q  338 agaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    |||||||||| |||||||||||||| |||||||| || |||||| ||||||| ||| ||||||    
T  37447803 agaaacactacattaatgttgatattttgaaaatggtcatgagtgttcaaaattttatcatat 37447741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 389
Target Start/End: Original strand, 40318368 - 40318448
Alignment:
Q  308 tgttttccatataaaatcaaaa-tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 389  Q
    ||||||||||||||||| |||| |||||||||  |||||| | ||| ||||||||| || |||||||||||||||||||||||    
T  40318368 tgttttccatataaaataaaaaatatttaataagaacactta-ttagtgttgatatttt-aaaatagttatgagttttcaaaa 40318448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 389
Target Start/End: Complemental strand, 41409172 - 41409092
Alignment:
Q  308 tgttttccatataaaatcaaaa-tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 389  Q
    ||||||||||||||||| |||| |||||||||  |||||| | ||| ||||||||| || |||||||||||||||||||||||    
T  41409172 tgttttccatataaaataaaaaatatttaataagaacactta-ttagtgttgatatttt-aaaatagttatgagttttcaaaa 41409092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 308 - 389
Target Start/End: Original strand, 17762794 - 17762875
Alignment:
Q  308 tgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 389  Q
    |||||| |||||||||| ||||  |||||||||||||||||| |||||| |||  || ||||||||| | ||||||||||||||    
T  17762794 tgttttgcatataaaataaaaagttatttaatagaaacactacattaattttg--attttgaaaatactcatgagttttcaaaa 17762875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 349 - 414
Target Start/End: Original strand, 41912704 - 41912768
Alignment:
Q  349 attaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatatggatatatgaaaaa 414  Q
    ||||||||| |||||||||||||||| |  |||||||||||||||||||||| |||| || |||||    
T  41912704 attaatgtt-atatgttgaaaatagtcacaagttttcaaaactttctcatatcgatacattaaaaa 41912768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 327 - 399
Target Start/End: Original strand, 17694034 - 17694106
Alignment:
Q  327 aaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcata 399  Q
    ||||||||||||| ||||||| | |||||||||||| || |||||| ||| ||||||| |||| ||| |||||    
T  17694034 aaatatttaatagcaacactatactaatgttgatattttaaaaataattacgagtttttaaaattttatcata 17694106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 316 - 389
Target Start/End: Original strand, 22554745 - 22554820
Alignment:
Q  316 atataaaatcaaaat--atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 389  Q
    ||||||||| |||||  |||||||||| |||||| |||||||||||||| || |||||||| | |||||| |||||    
T  22554745 atataaaataaaaatttatttaatagacacactacattaatgttgatattttaaaaatagtcacgagtttccaaaa 22554820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 362
Target Start/End: Complemental strand, 12048810 - 12048740
Alignment:
Q  294 caaatatttgacgttgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatat 362  Q
    ||||||||| ||| ||||||  ||||||||| ||||  |||||||||||||||||| ||| ||||||||||    
T  12048810 caaatatttaacggtgttttaaatataaaataaaaagttatttaatagaaacactacattgatgttgatat 12048740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 389
Target Start/End: Original strand, 21118353 - 21118412
Alignment:
Q  330 tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 389  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||| | || |||||| ||||    
T  21118353 tatttaatagaaacattaaattaattttgatattttgaaaataatcattagttttaaaaa 21118412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 331 - 385
Target Start/End: Original strand, 54194 - 54248
Alignment:
Q  331 atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttc 385  Q
    ||||||||||||||||||||||||||| |||| || ||||||  ||| |||||||    
T  54194 atttaatagaaacactaaattaatgttaatattttaaaaatatctataagttttc 54248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 362
Target Start/End: Original strand, 17694197 - 17694253
Alignment:
Q  308 tgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatat 362  Q
    |||||| |||||||||| ||||  ||||||||| |||||||| ||||||||||||||    
T  17694197 tgttttacatataaaataaaaaaatatttaatataaacactacattaatgttgatat 17694253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 398
Target Start/End: Original strand, 21117522 - 21117630
Alignment:
Q  292 tgcaaatatttgacgttgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 389  Q
    |||||||||||  || ||||||  ||||||||| |||   |||||||| |||| |||| ||| |||||||||| |||||||||||  |||||||| ||||    
T  21117522 tgcaaatatttatcggtgttttaaatataaaataaaatgttatttaattgaaatactacattgatgttgatattttgaaaatagtcgtgagtttttaaaa 21117621  T
Q  390 ctttctcat 398  Q
     ||| ||||    
T  21117622 ttttatcat 21117630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 370
Target Start/End: Original strand, 22554269 - 22554306
Alignment:
Q  333 ttaatagaaacactaaattaatgttgatatgttgaaaa 370  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  22554269 ttaatagaaacactacattaatgttgatattttgaaaa 22554306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 315 - 388
Target Start/End: Original strand, 3419811 - 3419886
Alignment:
Q  315 catataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaa 388  Q
    |||||||||| ||||  ||||||||||||||| |  |||||| ||||||| || |||||||| |||| ||||||||    
T  3419811 catataaaataaaaagctatttaatagaaacattgcattaatattgatattttaaaaatagtcatgaattttcaaa 3419886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 330 - 374
Target Start/End: Original strand, 22555121 - 22555165
Alignment:
Q  330 tatttaatagaaacactaaattaatgttgatatgttgaaaatagt 374  Q
    ||||||||||| |||||| |||||||||||||| || ||||||||    
T  22555121 tatttaatagacacactacattaatgttgatattttaaaaatagt 22555165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 326 - 398
Target Start/End: Original strand, 40373794 - 40373866
Alignment:
Q  326 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcat 398  Q
    ||||||||||||| |||| | | |||||| ||||||| |||||||||   | |||||||||||||||| ||||    
T  40373794 aaaatatttaatataaactcgacattaattttgatattttgaaaataacgacgagttttcaaaactttatcat 40373866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 330 - 400
Target Start/End: Complemental strand, 1102398 - 1102328
Alignment:
Q  330 tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    ||||||||||| |||||| |||||||||||||| ||||||||||||||||||||  |||| ||| ||||||    
T  1102398 tatttaatagacacactacattaatgttgatattttgaaaatagttatgagtttctaaaattttatcatat 1102328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 349 - 431
Target Start/End: Complemental strand, 3142558 - 3142476
Alignment:
Q  349 attaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatatggatatatgaaaaattgattcttcatatata 431  Q
    ||||| |||||||||||||||||||| ||||||||||||||| |||||| || |||| || |||||||| |||  ||||||||    
T  3142558 attaacgttgatatgttgaaaatagtcatgagttttcaaaacattctcagatcgatacataaaaaattgcttccccatatata 3142476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 295 - 400
Target Start/End: Original strand, 30081519 - 30081626
Alignment:
Q  295 aaatatttgacgttgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactt 392  Q
    |||||||| ||| ||||||  ||||||||| ||||  ||||||||| |||||| | |||||||||||||| || |||||||| |||||||| ||||| ||    
T  30081519 aaatatttaacggtgttttaaatataaaataaaaagttatttaatataaacacgacattaatgttgatattttcaaaatagtcatgagtttccaaaattt 30081618  T
Q  393 tctcatat 400  Q
    | ||||||    
T  30081619 tatcatat 30081626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 329 - 391
Target Start/End: Original strand, 7165500 - 7165562
Alignment:
Q  329 atatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaact 391  Q
    ||||||||||||||||||| |||||||| |||||  | ||||||||||| |||||||||||||    
T  7165500 atatttaatagaaacactacattaatgtagatattataaaaatagttattagttttcaaaact 7165562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 400
Target Start/End: Complemental strand, 8494310 - 8494242
Alignment:
Q  332 tttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    ||||||||||| |||| ||||||||| |||| || ||||||||||| ||||||| ||||||| ||||||    
T  8494310 tttaatagaaatactacattaatgtttatattttaaaaatagttattagttttcgaaactttatcatat 8494242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 389
Target Start/End: Complemental strand, 20126269 - 20126209
Alignment:
Q  329 atatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 389  Q
    ||||||||||||||||||| ||| |||||||||| ||||||||||| |||| |||| ||||    
T  20126269 atatttaatagaaacactacattgatgttgatattttgaaaatagtcatgaatttttaaaa 20126209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 316 - 400
Target Start/End: Complemental strand, 4145067 - 4144981
Alignment:
Q  316 atataaaatcaaaat--atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    ||||||||| |||||  ||| ||||||||||||| ||||||||| |||| ||||||||| | ||||||||||| || ||| ||||||    
T  4145067 atataaaataaaaatttattcaatagaaacactatattaatgtttatattttgaaaatattaatgagttttcacaattttatcatat 4144981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 310 - 389
Target Start/End: Complemental strand, 31720941 - 31720862
Alignment:
Q  310 ttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 389  Q
    |||| |||||||||| ||||  |||||||||||||||||| |||||| |||  || ||||||||||| ||||||||||||||    
T  31720941 ttttgcatataaaataaaaagttatttaatagaaacactacattaattttg--attttgaaaatagtgatgagttttcaaaa 31720862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 308 - 400
Target Start/End: Complemental strand, 37834538 - 37834445
Alignment:
Q  308 tgttttccatataaaatcaaaat--atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    |||||| || ||||||| |||||  |||||||||||| |||| |||||| ||||||| |||||||||||  ||||||||||||| ||| ||||||    
T  37834538 tgttttgcaaataaaataaaaatttatttaatagaaaaactacattaattttgatat-ttgaaaatagtcttgagttttcaaaattttatcatat 37834445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 335 - 400
Target Start/End: Complemental strand, 4161026 - 4160961
Alignment:
Q  335 aatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    ||||||||||||| ||||||||| |||| ||||||||| | ||||||||||| || ||| ||||||    
T  4161026 aatagaaacactatattaatgtttatattttgaaaatattaatgagttttcacaattttatcatat 4160961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 372
Target Start/End: Complemental strand, 495262 - 495180
Alignment:
Q  292 tgcaaatatttgacgttgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaata 372  Q
    ||||||||||| ||| | ||||  ||||||||| ||||  |||||||||||||||||| ||| ||||||||||  ||||||||    
T  495262 tgcaaatatttaacggtattttaaatataaaataaaaagttatttaatagaaacactacattgatgttgatattctgaaaata 495180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 400
Target Start/End: Complemental strand, 4161232 - 4161146
Alignment:
Q  316 atataaaatcaaaat--atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    ||||||||| |||||  ||| ||||||||||||| ||||||||| || | ||||||||| | ||||||||||| || ||| ||||||    
T  4161232 atataaaataaaaatttattcaatagaaacactatattaatgtttatcttttgaaaatattaatgagttttcacaattttatcatat 4161146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 400
Target Start/End: Complemental strand, 12946607 - 12946498
Alignment:
Q  292 tgcaaatatttgacgttgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 389  Q
    ||||||||||| | | ||||||| ||||||||| ||||  ||||||||||||| |||| | |||| ||||||| ||||||||| | ||| ||||| ||||    
T  12946607 tgcaaatatttaaaggtgttttc-atataaaattaaaacttatttaatagaaatactacaataattttgatattttgaaaataataatgtgtttttaaaa 12946509  T
Q  390 ctttctcatat 400  Q
     ||| ||||||    
T  12946508 ttttatcatat 12946498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 388
Target Start/End: Original strand, 13698423 - 13698497
Alignment:
Q  316 atataaaatcaaaat--atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaa 388  Q
    ||||||||| |||||  |||||||||| | || | |||||||||||||| |||||||| || |||||||||||||    
T  13698423 atataaaatgaaaattaatttaatagacaaacaacattaatgttgatattttgaaaattgtcatgagttttcaaa 13698497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 401
Target Start/End: Original strand, 27532317 - 27532376
Alignment:
Q  342 acactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatatg 401  Q
    |||||| |||||||||||||| || |||||| | |||||||||||||| ||| |||||||    
T  27532317 acactatattaatgttgatattttaaaaataatcatgagttttcaaaattttatcatatg 27532376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 308 - 383
Target Start/End: Complemental strand, 494722 - 494645
Alignment:
Q  308 tgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttt 383  Q
    |||||| |||||||||| ||||  |||| ||||||||||||| ||||||||| |||| |||| |||| | ||||||||    
T  494722 tgttttgcatataaaataaaaagttattcaatagaaacactatattaatgtttatattttgacaatattaatgagttt 494645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 400
Target Start/End: Original strand, 20105992 - 20106083
Alignment:
Q  308 tgttttccatataaaatcaaaat-atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    |||||| |||||||||| ||||| ||||||||  |||||| | ||||||||||||| ||| ||||||| || ||||||||||| ||| ||||||    
T  20105992 tgtttttcatataaaataaaaattatttaataagaacactta-ttaatgttgatattttg-aaatagtcataagttttcaaaattttatcatat 20106083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 368
Target Start/End: Complemental strand, 20126467 - 20126414
Alignment:
Q  315 catataaaatcaaaatatttaatagaaacactaaattaatgttgatatgttgaa 368  Q
    |||||||||| ||||||||||||| |||||||| ||| |||| ||||| |||||    
T  20126467 catataaaataaaaatatttaataaaaacactacattgatgtcgatattttgaa 20126414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 325 - 400
Target Start/End: Complemental strand, 3142234 - 3142158
Alignment:
Q  325 caaaatatttaatagaaacactaaattaatg-ttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    ||||||||||||||||||  ||| |||||   ||||||| ||||||||||| | |||||||||||| ||| ||||||    
T  3142234 caaaatatttaatagaaatgctacattaaacattgatattttgaaaatagtcacgagttttcaaaattttatcatat 3142158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 326 - 358
Target Start/End: Complemental strand, 3142412 - 3142380
Alignment:
Q  326 aaaatatttaatagaaacactaaattaatgttg 358  Q
    |||||||||||||||||||||| ||||||||||    
T  3142412 aaaatatttaatagaaacactacattaatgttg 3142380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 333 - 389
Target Start/End: Original strand, 25810419 - 25810475
Alignment:
Q  333 ttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 389  Q
    |||||||||||| |  |||||||||||||| ||||||||||| | ||||||| ||||    
T  25810419 ttaatagaaacattgcattaatgttgatattttgaaaatagtaacgagtttttaaaa 25810475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 327 - 400
Target Start/End: Complemental strand, 34913708 - 34913635
Alignment:
Q  327 aaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    |||||||||||||||||| ||||||||||||||||| ||| |||||||  || ||||| |||| ||| ||||||    
T  34913708 aaatatttaatagaaacaataaattaatgttgatattttgtaaatagtcttgggtttttaaaattttatcatat 34913635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 362
Target Start/End: Original strand, 25699301 - 25699345
Alignment:
Q  318 ataaaatcaaaatatttaatagaaacactaaattaatgttgatat 362  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||    
T  25699301 ataaaataaaaatatttaatagaaacactatattaatgttgatat 25699345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 326 - 400
Target Start/End: Original strand, 13004036 - 13004108
Alignment:
Q  326 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    ||||||||||||||||||| || ||||||  ||||||| |||||||| ||||||||||| |||| ||| ||||||    
T  13004036 aaaatatttaatagaaacattatattaat--tgatatgctgaaaatacttatgagtttttaaaattttatcatat 13004108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 294 - 400
Target Start/End: Complemental strand, 42499089 - 42498982
Alignment:
Q  294 caaatatttgacgttgttttccatataaaatcaaaa-tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactt 392  Q
    ||||||||| ||| | ||||  ||||||||| |||| |||||||||||| || || ||||||| |||||| ||||||||||||| || |||| |||| ||    
T  42499089 caaatattttacgatattttgtatataaaataaaaaatatttaatagaatcattatattaatgatgatattttgaaaatagttacgaatttttaaaattt 42498990  T
Q  393 tctcatat 400  Q
    | ||||||    
T  42498989 tatcatat 42498982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 292 - 400
Target Start/End: Complemental strand, 36648177 - 36648068
Alignment:
Q  292 tgcaaatatttgacgttgttttccatataaaatcaa-aatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaac 390  Q
    ||||||||||  ||| |||||| ||| |||||| |  |||||||||||||||  ||| |||||||||||||| |||||||||||  | |||||| ||||     
T  36648177 tgcaaatattcaacggtgttttgcatgtaaaataaggaatatttaatagaaattctatattaatgttgatattttgaaaatagtcgtaagtttttaaaat 36648078  T
Q  391 tttctcatat 400  Q
    ||| ||||||    
T  36648077 tttatcatat 36648068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 320 - 384
Target Start/End: Complemental strand, 6128176 - 6128112
Alignment:
Q  320 aaaatcaaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagtttt 384  Q
    |||| |||||||||||||| |||||||| | | |||||||| | ||||||||||| |||||||||    
T  6128176 aaaaacaaaatatttaataaaaacactacactgatgttgatgttttgaaaatagtcatgagtttt 6128112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 333 - 431
Target Start/End: Original strand, 25699650 - 25699748
Alignment:
Q  333 ttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatatggatatatgaaaaattgattcttcatatata 431  Q
    ||||||||||||||| ||||||| ||  ||| | |||||||| || |||||| |||| ||| |||||| |||| || |||||||| |||| || |||||    
T  25699650 ttaatagaaacactacattaatgatggcatgataaaaatagtcataagtttttaaaattttatcatatcgatacataaaaaattgcttctccagatata 25699748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 389
Target Start/End: Complemental strand, 34913835 - 34913778
Alignment:
Q  332 tttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 389  Q
    ||||||||| ||| ||||||||| |||||||  ||||||||||| ||||| |||||||    
T  34913835 tttaatagagacattaaattaatattgatattctgaaaatagttgtgagtgttcaaaa 34913778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 12521045 - 12521009
Alignment:
Q  12 agagaatttcaaaggtttgtaacaaccaatttggttc 48  Q
    ||||||||||||| |||||||||||||| ||||||||    
T  12521045 agagaatttcaaaagtttgtaacaaccattttggttc 12521009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 295 - 400
Target Start/End: Original strand, 25721726 - 25721833
Alignment:
Q  295 aaatatttgacgttgttttccatataaaat--caaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactt 392  Q
    |||||| | ||| |||||| ||||| ||||  |||||||||||||  |||| ||  |||||||||||||| ||||||||||| || | ||||||| | ||    
T  25721726 aaatatataacggtgttttacatatgaaataacaaaatatttaatgtaaactcttcattaatgttgatattttgaaaatagtaatcaattttcaacattt 25721825  T
Q  393 tctcatat 400  Q
    | ||||||    
T  25721826 tatcatat 25721833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 308 - 389
Target Start/End: Complemental strand, 36647515 - 36647432
Alignment:
Q  308 tgttttccatataaaatcaaaatattt--aatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 389  Q
    |||||| |||||||||| ||||||| |  ||||||||||  | ||||||||| |||| | |||||||||||| |||||| ||||    
T  36647515 tgttttgcatataaaataaaaatatattaaatagaaacatgacattaatgtttatatttcgaaaatagttataagttttaaaaa 36647432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 349 - 401
Target Start/End: Complemental strand, 36647990 - 36647938
Alignment:
Q  349 attaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatatg 401  Q
    |||||||||||||| |||||||||||| | | ||||||||| ||| |||||||    
T  36647990 attaatgttgatattttgaaaatagttgttaattttcaaaattttatcatatg 36647938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1609 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: scaffold1609
Description:

Target: scaffold1609; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 315 - 383
Target Start/End: Original strand, 584 - 654
Alignment:
Q  315 catataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttt 383  Q
    |||||||||| ||||  |||||||||||||||||| ||||||||| |||| ||||||||||| || |||||    
T  584 catataaaataaaaagttatttaatagaaacactacattaatgtttatattttgaaaatagtcattagttt 654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1609; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 400
Target Start/End: Original strand, 251 - 320
Alignment:
Q  330 tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 400  Q
    |||||||||||||||||| ||||||||||| |  ||||||||||| | |||||||||||| ||| ||||||    
T  251 tatttaatagaaacactatattaatgttga-agtttgaaaatagtcacgagttttcaaaattttatcatat 320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1609; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 374
Target Start/End: Original strand, 406 - 466
Alignment:
Q  316 atataaaatcaaaat--atttaatagaaacactaaattaatgttgatatgttgaaaatagt 374  Q
    ||||||||| |||||  ||| |||||| |||||| |||||||||||||| |||||||||||    
T  406 atataaaataaaaatttattcaatagacacactacattaatgttgatattttgaaaatagt 466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 295 - 389
Target Start/End: Complemental strand, 77534 - 77439
Alignment:
Q  295 aaatatttgacgttgttttccatataaaatcaaaa-tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 389  Q
    |||||||| ||  |||||| |||||||||| |||| ||||||||| ||||| || |||||||||||||| || ||| |||| ||||||||| ||||    
T  77534 aaatattttacaatgttttgcatataaaataaaaaatatttaataaaaacattacattaatgttgatattttaaaagtagtcatgagtttttaaaa 77439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0636 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0636
Description:

Target: scaffold0636; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 400
Target Start/End: Complemental strand, 1231 - 1121
Alignment:
Q  292 tgcaaatatttgacgttgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 389  Q
    ||||||||||| ||| | ||||  ||||||||| ||||  |||||||||||||||||| ||||| || ||||| |||||||   | |||||||||||| |    
T  1231 tgcaaatatttaacgatatttttaatataaaataaaaacttatttaatagaaacactagattaaggtagatattttgaaaacgatcatgagttttcaata 1132  T
Q  390 ctttctcatat 400  Q
     ||| ||||||    
T  1131 ttttatcatat 1121  T

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Target: scaffold0013 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 294 - 389
Target Start/End: Complemental strand, 51256 - 51160
Alignment:
Q  294 caaatatttgacgttgttttccatataaaatcaaaa-tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 389  Q
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T  51256 caaatatttaacggcgttttacatataaaataaaaaataattaataaaactactacattaatgttaatattttaaaaatagttatgggtttttaaaa 51160  T

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