View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5397-Insertion-4 (Length: 560)

Name: NF5397-Insertion-4
Description: NF5397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5397-Insertion-4
NF5397-Insertion-4
[»] chr3 (18 HSPs)
chr3 (7-408)||(7419166-7419569)
chr3 (215-408)||(32240521-32240718)
chr3 (82-174)||(14236044-14236136)
chr3 (86-174)||(20791321-20791409)
chr3 (83-151)||(41607459-41607527)
chr3 (82-161)||(18427213-18427292)
chr3 (85-164)||(46160982-46161061)
chr3 (85-157)||(48351478-48351550)
chr3 (126-177)||(28529275-28529326)
chr3 (89-160)||(55452085-55452156)
chr3 (89-177)||(26310516-26310604)
chr3 (90-173)||(37600201-37600284)
chr3 (90-173)||(46237117-46237200)
chr3 (82-164)||(46450100-46450183)
chr3 (114-164)||(138798-138848)
chr3 (90-164)||(43657067-43657141)
chr3 (82-164)||(52124019-52124101)
chr3 (82-118)||(752473-752509)
[»] chr8 (15 HSPs)
chr8 (82-177)||(32072119-32072214)
chr8 (82-176)||(17499296-17499390)
chr8 (87-174)||(45246459-45246546)
chr8 (88-163)||(23685167-23685242)
chr8 (87-162)||(31301152-31301227)
chr8 (82-175)||(1977236-1977329)
chr8 (91-164)||(31711657-31711730)
chr8 (82-175)||(35151792-35151885)
chr8 (94-178)||(28211961-28212045)
chr8 (82-177)||(9952820-9952915)
chr8 (82-161)||(17716889-17716968)
chr8 (126-164)||(34861294-34861332)
chr8 (91-173)||(35689506-35689588)
chr8 (82-164)||(35797430-35797512)
chr8 (101-177)||(28413951-28414027)
[»] chr4 (16 HSPs)
chr4 (82-158)||(5044603-5044679)
chr4 (82-177)||(722179-722274)
chr4 (82-177)||(8108978-8109073)
chr4 (82-177)||(47009211-47009306)
chr4 (82-177)||(49077271-49077366)
chr4 (126-175)||(47237848-47237897)
chr4 (91-160)||(52671869-52671938)
chr4 (100-164)||(29699524-29699588)
chr4 (82-161)||(38636375-38636454)
chr4 (126-177)||(40991696-40991747)
chr4 (100-162)||(22592341-22592403)
chr4 (82-160)||(43771165-43771243)
chr4 (111-164)||(46287476-46287529)
chr4 (89-161)||(24938485-24938557)
chr4 (131-175)||(40812061-40812105)
chr4 (89-161)||(50481615-50481687)
[»] chr1 (17 HSPs)
chr1 (86-174)||(15523235-15523323)
chr1 (86-174)||(15531229-15531317)
chr1 (86-174)||(22540393-22540481)
chr1 (82-176)||(32211847-32211941)
chr1 (86-158)||(29418522-29418594)
chr1 (87-174)||(19101669-19101756)
chr1 (82-177)||(49730886-49730981)
chr1 (101-175)||(15928579-15928653)
chr1 (83-177)||(28218112-28218206)
chr1 (90-158)||(5848086-5848154)
chr1 (101-177)||(6133706-6133782)
chr1 (101-177)||(26980344-26980420)
chr1 (137-177)||(39039473-39039513)
chr1 (83-163)||(41958119-41958199)
chr1 (90-173)||(11430467-11430550)
chr1 (101-158)||(8741305-8741362)
chr1 (90-175)||(44739142-44739227)
[»] chr5 (13 HSPs)
chr5 (87-174)||(27592520-27592607)
chr5 (86-174)||(30325941-30326029)
chr5 (83-153)||(17434913-17434983)
chr5 (82-161)||(43405431-43405510)
chr5 (179-299)||(9624508-9624628)
chr5 (101-161)||(34384773-34384833)
chr5 (89-160)||(5413807-5413878)
chr5 (207-262)||(9620138-9620193)
chr5 (91-161)||(25564018-25564088)
chr5 (89-177)||(10142046-10142132)
chr5 (100-161)||(10253163-10253224)
chr5 (82-147)||(34480014-34480079)
chr5 (124-176)||(32050330-32050382)
[»] chr7 (16 HSPs)
chr7 (92-177)||(7775022-7775107)
chr7 (90-164)||(26703511-26703585)
chr7 (82-164)||(33008139-33008221)
chr7 (89-177)||(22189961-22190049)
chr7 (81-177)||(44510998-44511094)
chr7 (112-177)||(11824093-11824158)
chr7 (90-175)||(32212940-32213025)
chr7 (89-161)||(31502534-31502606)
chr7 (90-161)||(17354598-17354669)
chr7 (28-79)||(43235112-43235163)
chr7 (94-160)||(32205115-32205181)
chr7 (82-175)||(27949297-27949390)
chr7 (126-174)||(17749719-17749767)
chr7 (126-174)||(24539230-24539278)
chr7 (133-173)||(26703463-26703503)
chr7 (101-161)||(28713054-28713114)
[»] scaffold0018 (1 HSPs)
scaffold0018 (82-164)||(27847-27929)
[»] chr2 (16 HSPs)
chr2 (85-175)||(11539447-11539539)
chr2 (126-177)||(45554589-45554640)
chr2 (91-164)||(4877317-4877390)
chr2 (86-175)||(15508938-15509027)
chr2 (137-177)||(6980238-6980278)
chr2 (82-161)||(9470119-9470198)
chr2 (86-173)||(28898104-28898191)
chr2 (90-173)||(42182915-42182998)
chr2 (127-160)||(4602975-4603008)
chr2 (85-162)||(32856201-32856278)
chr2 (89-158)||(34142209-34142278)
chr2 (124-161)||(42579762-42579799)
chr2 (101-161)||(18511291-18511351)
chr2 (91-175)||(25730511-25730595)
chr2 (137-173)||(37719860-37719896)
chr2 (230-334)||(40879047-40879149)
[»] chr6 (9 HSPs)
chr6 (86-174)||(21987317-21987405)
chr6 (82-161)||(32122833-32122912)
chr6 (82-177)||(34905358-34905453)
chr6 (90-163)||(6531369-6531442)
chr6 (82-175)||(31116187-31116280)
chr6 (82-157)||(32599011-32599086)
chr6 (82-152)||(32112780-32112850)
chr6 (101-177)||(445840-445916)
chr6 (100-176)||(12327286-12327362)
[»] scaffold0543 (1 HSPs)
scaffold0543 (89-176)||(9687-9774)
[»] scaffold0492 (1 HSPs)
scaffold0492 (89-176)||(11233-11320)


Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 7 - 408
Target Start/End: Original strand, 7419166 - 7419569
Alignment:
Q  7 aaaaattgcaaatacatgtccaagtgtctcttttatttgtaattttatggtcaaaattgactaacgaaaaatatcttgtggatctacactttagaaatag 106  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7419166 aaaaattgcaaatacatttccaagtgtctcttttatttgtaattttatggtcaaaattgactaacgaaaaatatcttgtggatctacactttggaaatag 7419265  T
Q  107 aactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgttgatcaatgttacattagcagctcaatttgcg 206  Q
    |||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  7419266 aactcacacaaaatagagggacatatatttattttatctaataaaagagtgagtgctacatagagtgtt-atcaatgttacattagcagctcaatttgtg 7419364  T
Q  207 atatccatatttatgtagaaggctgttttaattaccaataaatggtatcaagagccaaagttaaactaagatgcaagccatttcaagcacatgtgtaacc 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||    
T  7419365 atatccatatttatgtagaaggctgttttaattaccaataaatggtatcaagagcc-aagttaaactaagatgctagcaatttcaagcacatgtgtaacc 7419463  T
Q  307 taaacttcagtaagtcgaatcaacaa-ttataag-ttaacgggactatgtgaatcaacataagaag-aaaatcaaagggaacca--taaaacaggtagaa 401  Q
    | |||||||||||||| ||||||||| ||||||| ||||||| ||||||||||||||||||||||| ||||||||||  || ||   |||||||||||||    
T  7419464 t-aacttcagtaagtctaatcaacaatttataagtttaacggaactatgtgaatcaacataagaagaaaaatcaaagaaaatcaataaaaacaggtagaa 7419562  T
Q  402 aaaagat 408  Q
    |||||||    
T  7419563 aaaagat 7419569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 215 - 408
Target Start/End: Original strand, 32240521 - 32240718
Alignment:
Q  215 atttatgtagaaggctgttttaattaccaataaatggtatcaagagccaaagttaaactaagatgcaagccatttcaagcacatgtgtaacctaaacttc 314  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||  |||| ||||||||||| ||| |||||||||||||| ||||||| |||||     
T  32240521 atttatctagaaggctgttttaattaccaagaaatggtatcaagagcc-tagttgaactaagatgccagcaatttcaagcacatgagtaacct-aacttg 32240618  T
Q  315 agtaagtcgaatcaacaa-ttataag-ttaacgggactatgtgaatcaacataagaag-aaaatcaaagg--gaaccat-aaaacaggtagaaaaaagat 408  Q
    |||||||| ||||||||| ||||||| ||||||| |||||||||| ||| | |||||| |||||||||||  || | || ||||||||||||||||||||    
T  32240619 agtaagtctaatcaacaatttataagtttaacggaactatgtgaaccaatagaagaagaaaaatcaaaggttgatcaataaaaacaggtagaaaaaagat 32240718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 82 - 174
Target Start/End: Complemental strand, 14236136 - 14236044
Alignment:
Q  82 ttgtggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgt 174  Q
    ||||||||||||||||| |||||||||||| || ||| | | | |||||||||| |||||||||||||||| ||||||||||| | |||||||    
T  14236136 ttgtggatctacactttggaaatagaactcgcataaagtggtgggacatatattgatttcatccaataaaatagtgagtgctaaagagagtgt 14236044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 86 - 174
Target Start/End: Complemental strand, 20791409 - 20791321
Alignment:
Q  86 ggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgt 174  Q
    ||||||||||||| |||||||||||| || ||| | | | |||||| ||| |||||||||||||||| ||||||||||| | |||||||    
T  20791409 ggatctacactttggaaatagaactcgcataaagtggtgggacatacattgatttcatccaataaaatagtgagtgctaaagagagtgt 20791321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 41607527 - 41607459
Alignment:
Q  83 tgtggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaa 151  Q
    ||||||||||||||||  ||||  |||||||||||||||| |||||||||||| ||| |||||||||||    
T  41607527 tgtggatctacactttgaaaattaaactcacacaaaatagtgagacatatattgattacatccaataaa 41607459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 82 - 161
Target Start/End: Original strand, 18427213 - 18427292
Alignment:
Q  82 ttgtggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtg 161  Q
    |||||| ||||||||||  ||||||||| |||||||||| | | |||||| ||| ||||||||||||||| |||||||||    
T  18427213 ttgtgggtctacactttgaaaatagaacccacacaaaatggtgggacatacattgatttcatccaataaatgagtgagtg 18427292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 85 - 164
Target Start/End: Complemental strand, 46161061 - 46160982
Alignment:
Q  85 tggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgcta 164  Q
    |||||||||||||| ||||||||||  ||||||| | |   ||||| |||| ||||||||||||||||||||||||||||    
T  46161061 tggatctacactttggaaatagaaccaacacaaagtggtcggacatgtattgatttcatccaataaaagagtgagtgcta 46160982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 157
Target Start/End: Complemental strand, 48351550 - 48351478
Alignment:
Q  85 tggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtg 157  Q
    ||||| ||||||||  |||| |||| |||||||| ||| |||||||||||| |||| ||||||||||||||||    
T  48351550 tggatatacactttgaaaattgaacccacacaaagtagtgagacatatattgattttatccaataaaagagtg 48351478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 126 - 177
Target Start/End: Complemental strand, 28529326 - 28529275
Alignment:
Q  126 gacatatatttatttcatccaataaaagagtgagtgctacatagagtgttga 177  Q
    |||||| ||| |||||||||||||||||||||||||||| | ||||||||||    
T  28529326 gacatacattgatttcatccaataaaagagtgagtgctagagagagtgttga 28529275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 89 - 160
Target Start/End: Original strand, 55452085 - 55452156
Alignment:
Q  89 tctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagt 160  Q
    |||||||||| |||||||||| |||||||| | | | |||||| || |||| ||||||||||||||||||||    
T  55452085 tctacactttggaaatagaacccacacaaagtggtgggacatacatgtattccatccaataaaagagtgagt 55452156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 177
Target Start/End: Original strand, 26310516 - 26310604
Alignment:
Q  89 tctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgttga 177  Q
    ||||||||||  |||| ||||  ||| ||||| | | |||||| ||| |||||||||||||||||||| ||||||| | ||||||||||    
T  26310516 tctacactttgaaaattgaaccaacaaaaaatggtgggacatacattgatttcatccaataaaagagtaagtgctagagagagtgttga 26310604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 173
Target Start/End: Original strand, 37600201 - 37600284
Alignment:
Q  90 ctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtg 173  Q
    ||||||||||||||| |||| |||| ||| | | | |||||| ||| |||||| |||||||||||||| |||||| | ||||||    
T  37600201 ctacactttagaaatggaacccacataaagtggtgggacatacattgatttcacccaataaaagagtgggtgctagagagagtg 37600284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 173
Target Start/End: Original strand, 46237117 - 46237200
Alignment:
Q  90 ctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtg 173  Q
    ||||| ||||||||| |||| |||| ||| | | | |||||| ||| |||||||||||||||||||||| ||||| | ||||||    
T  46237117 ctacattttagaaatggaacccacataaagtggtgggacatacattgatttcatccaataaaagagtgattgctagagagagtg 46237200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 46450183 - 46450100
Alignment:
Q  82 ttgtggatctacactttagaaatagaactcacacaaaa-tagagagacatatatttatttcatccaataaaagagtgagtgcta 164  Q
    |||||| ||||||||||  ||||||||| ||||||||| | | | |||||| ||| ||| |||| |||||||||||||||||||    
T  46450183 ttgtgggtctacactttgcaaatagaacccacacaaaagtggtgggacatacattgattccatctaataaaagagtgagtgcta 46450100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 114 - 164
Target Start/End: Complemental strand, 138848 - 138798
Alignment:
Q  114 acaaaatagagagacatatatttatttcatccaataaaagagtgagtgcta 164  Q
    ||||||| | |||||||| ||| ||||||| ||||||||||||||||||||    
T  138848 acaaaatggtgagacatacattgatttcattcaataaaagagtgagtgcta 138798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 90 - 164
Target Start/End: Original strand, 43657067 - 43657141
Alignment:
Q  90 ctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgcta 164  Q
    ||||||||| ||||| ||||||||| ||| | | | |||||| ||| |||||||| ||||||| |||||||||||    
T  43657067 ctacactttggaaatggaactcacataaagtggtgggacatacattgatttcatcaaataaaatagtgagtgcta 43657141  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 52124019 - 52124101
Alignment:
Q  82 ttgtggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgcta 164  Q
    |||||| ||||||||||  |||| |||| | |||||||||| | |||||| ||| ||||||||||| |||  |||||||||||    
T  52124019 ttgtgggtctacactttgaaaattgaacccccacaaaatagtgggacatacattaatttcatccaacaaataagtgagtgcta 52124101  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 82 - 118
Target Start/End: Complemental strand, 752509 - 752473
Alignment:
Q  82 ttgtggatctacactttagaaatagaactcacacaaa 118  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  752509 ttgtgggtctacactttagaaatagaacccacacaaa 752473  T

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Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 82 - 177
Target Start/End: Complemental strand, 32072214 - 32072119
Alignment:
Q  82 ttgtggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgttga 177  Q
    |||||| ||||||||||| |||| |||| |||||||| | | | |||||| ||| |||||||||||||||||||||||||||| | ||||||||||    
T  32072214 ttgtgggtctacactttaaaaattgaacccacacaaagtggtgggacatacattcatttcatccaataaaagagtgagtgctagagagagtgttga 32072119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 82 - 176
Target Start/End: Original strand, 17499296 - 17499390
Alignment:
Q  82 ttgtggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgttg 176  Q
    |||||||||||||||||  |||| ||||  ||||||||| | | |||||||||| ||||||||||||||||||  |||||||| | |||||||||    
T  17499296 ttgtggatctacactttgaaaattgaaccaacacaaaatggtgggacatatattgatttcatccaataaaagatagagtgctagagagagtgttg 17499390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 87 - 174
Target Start/End: Complemental strand, 45246546 - 45246459
Alignment:
Q  87 gatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgt 174  Q
    |||||||||||| |||||||||||| || ||| | | |||||||| ||| |||| ||||||||||| ||||||||||| | |||||||    
T  45246546 gatctacactttggaaatagaactcgcataaagtggtgagacatacattgattttatccaataaaatagtgagtgctaaagagagtgt 45246459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 88 - 163
Target Start/End: Complemental strand, 23685242 - 23685167
Alignment:
Q  88 atctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgct 163  Q
    ||||||||||| |||||||||||| || ||| | | | |||||| ||| |||||||||||||||| ||||||||||    
T  23685242 atctacactttggaaatagaactcgcataaagtggtgggacatacattgatttcatccaataaaatagtgagtgct 23685167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 87 - 162
Target Start/End: Complemental strand, 31301227 - 31301152
Alignment:
Q  87 gatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgc 162  Q
    ||||||||| ||  |||||||||||||||||| | | |  ||||| ||| ||||||||||||||||||||||||||    
T  31301227 gatctacacattgaaaatagaactcacacaaagtggtggaacatacattgatttcatccaataaaagagtgagtgc 31301152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 82 - 175
Target Start/End: Original strand, 1977236 - 1977329
Alignment:
Q  82 ttgtggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgtt 175  Q
    |||||||||||||||||  |||| |||| |||||||| | |   |||||| ||| ||||||||||| | |||||||||||||| | ||||||||    
T  1977236 ttgtggatctacactttgaaaattgaacccacacaaagtggttggacatacattgatttcatccaacagaagagtgagtgctagagagagtgtt 1977329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 164
Target Start/End: Complemental strand, 31711730 - 31711657
Alignment:
Q  91 tacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgcta 164  Q
    |||||||||||||||||||||||||||| |   |||||||  ||  ||| |||| |||||||||||||||||||    
T  31711730 tacactttagaaatagaactcacacaaagtgatgagacatgcatgaattccatcaaataaaagagtgagtgcta 31711657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 82 - 175
Target Start/End: Original strand, 35151792 - 35151885
Alignment:
Q  82 ttgtggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgtt 175  Q
    |||||| ||||||||||| |||| |||  | |||||||| | | |||||| ||| |||||||||||||||||||| | ||||| | ||||||||    
T  35151792 ttgtgggtctacactttaaaaattgaatccccacaaaatggtgggacatacattgatttcatccaataaaagagtaaatgctaaaaagagtgtt 35151885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 94 - 178
Target Start/End: Original strand, 28211961 - 28212045
Alignment:
Q  94 actttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgttgat 178  Q
    |||||| |||| |||| |||| ||||| | |||||||||||| |||||| ||||||||  ||||||||||| | |||| ||||||    
T  28211961 actttaaaaatggaacccacataaaatggtgagacatatattgatttcacccaataaataagtgagtgctagagagagcgttgat 28212045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 177
Target Start/End: Original strand, 9952820 - 9952915
Alignment:
Q  82 ttgtggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgttga 177  Q
    |||||| | ||||||||  |||| ||||||||||||| | | | |||||  ||| |||||||||||||||| | ||||||||| | ||||||||||    
T  9952820 ttgtgggtttacactttgaaaattgaactcacacaaagtggtgggacatgcattgatttcatccaataaaaaaatgagtgctagagagagtgttga 9952915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 161
Target Start/End: Complemental strand, 17716968 - 17716889
Alignment:
Q  82 ttgtggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtg 161  Q
    |||||| ||||||||||  ||||  ||| |||| ||||||| | |||||||||| ||||||||||||||||  |||||||    
T  17716968 ttgtgggtctacactttgaaaattaaacccacataaaatagtgggacatatattgatttcatccaataaaactgtgagtg 17716889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 164
Target Start/End: Original strand, 34861294 - 34861332
Alignment:
Q  126 gacatatatttatttcatccaataaaagagtgagtgcta 164  Q
    |||||| ||| ||||||||||||||||||||||||||||    
T  34861294 gacatacattgatttcatccaataaaagagtgagtgcta 34861332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 173
Target Start/End: Complemental strand, 35689588 - 35689506
Alignment:
Q  91 tacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtg 173  Q
    ||||||||  |||| ||||||||| ||| | | | |||||| ||| |||||||||||||||| ||||||||||| | ||||||    
T  35689588 tacactttgaaaatggaactcacataaagtggtgggacatacattgatttcatccaataaaaaagtgagtgctagagagagtg 35689506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 35797512 - 35797430
Alignment:
Q  82 ttgtggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgcta 164  Q
    |||||||| ||||||||| |||| |||||| |||||| | | |  ||||| ||| |||| ||||||||||||||||| |||||    
T  35797512 ttgtggatttacactttaaaaattgaactcgcacaaagtggtggaacatacattgattttatccaataaaagagtgaatgcta 35797430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 28413951 - 28414027
Alignment:
Q  101 aaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgttga 177  Q
    |||| ||||||||||||| | | | |||||| ||| |||||||| ||||||| |||||| |||| | ||||||||||    
T  28413951 aaattgaactcacacaaagtggtgggacatacattgatttcatcgaataaaaaagtgagcgctagagagagtgttga 28414027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 82 - 158
Target Start/End: Original strand, 5044603 - 5044679
Alignment:
Q  82 ttgtggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtga 158  Q
    |||||| |||||| |||| |||| ||||||||||||||||| | |||||||||| |||||||||||||||| |||||    
T  5044603 ttgtgggtctacattttaaaaattgaactcacacaaaatagtgtgacatatattgatttcatccaataaaaaagtga 5044679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 82 - 177
Target Start/End: Complemental strand, 722274 - 722179
Alignment:
Q  82 ttgtggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgttga 177  Q
    |||||| ||||||||||| |||| ||||| ||||||| | | | ||||||  || |||||||||||||||| ||||||||||| | ||||||||||    
T  722274 ttgtgggtctacactttaaaaattgaacttacacaaagtggtgggacatactttgatttcatccaataaaaaagtgagtgctagagagagtgttga 722179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 82 - 177
Target Start/End: Complemental strand, 8109073 - 8108978
Alignment:
Q  82 ttgtggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgttga 177  Q
    |||||| ||||||||||  |||| ||||  ||||||| ||| | |||||| ||| |||||| ||||||||||||||||||||| | ||||||||||    
T  8109073 ttgtgggtctacactttgaaaattgaacaaacacaaattagtgggacatacattgatttcacccaataaaagagtgagtgctagagagagtgttga 8108978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 82 - 177
Target Start/End: Complemental strand, 47009306 - 47009211
Alignment:
Q  82 ttgtggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgttga 177  Q
    ||||| |||||||||||  |||| |||||||||||||   | |||||| | ||| |||| ||||||||||||||||||||||| | ||||||||||    
T  47009306 ttgtgtatctacactttgaaaattgaactcacacaaagcggtgagacaaacattaattttatccaataaaagagtgagtgctagaaagagtgttga 47009211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 82 - 177
Target Start/End: Complemental strand, 49077366 - 49077271
Alignment:
Q  82 ttgtggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgttga 177  Q
    |||||| ||||||||||| |||| |||| |||||||| | | | |||||||||| |||| ||| ||||||||| ||||||||| | ||| ||||||    
T  49077366 ttgtgggtctacactttaaaaattgaacccacacaaagtggtgggacatatattaattttatctaataaaagaatgagtgctaaagagaatgttga 49077271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 47237848 - 47237897
Alignment:
Q  126 gacatatatttatttcatccaataaaagagtgagtgctacatagagtgtt 175  Q
    |||||||||| |||||||||||||||||||||| ||||| | ||||||||    
T  47237848 gacatatattgatttcatccaataaaagagtgaatgctagagagagtgtt 47237897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 160
Target Start/End: Complemental strand, 52671938 - 52671869
Alignment:
Q  91 tacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagt 160  Q
    ||||||||| |||| ||||| ||| ||||| | | |||||| |||||||||||||||||||| |||||||    
T  52671938 tacactttaaaaattgaacttacataaaatggtgggacatacatttatttcatccaataaaaaagtgagt 52671869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 29699588 - 29699524
Alignment:
Q  100 gaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgcta 164  Q
    ||||||||||  ||||||| | | | ||||| |||| ||||||||||||||||||||||||||||    
T  29699588 gaaatagaaccaacacaaagtggtgggacatgtattgatttcatccaataaaagagtgagtgcta 29699524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 161
Target Start/End: Complemental strand, 38636454 - 38636375
Alignment:
Q  82 ttgtggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtg 161  Q
    |||||||||||||||||| ||||   || |||| ||| ||| |||||||| ||| |||| ||| ||||||||||||||||    
T  38636454 ttgtggatctacactttaaaaattagacccacataaagtagtgagacatacattgattttatcaaataaaagagtgagtg 38636375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 177
Target Start/End: Original strand, 40991696 - 40991747
Alignment:
Q  126 gacatatatttatttcatccaataaaagagtgagtgctacatagagtgttga 177  Q
    |||||||||| |||||||||||| |||||||||||| || | ||||||||||    
T  40991696 gacatatattgatttcatccaatgaaagagtgagtgatagagagagtgttga 40991747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 162
Target Start/End: Complemental strand, 22592403 - 22592341
Alignment:
Q  100 gaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgc 162  Q
    ||||||||||  ||||||| | | | |||| | ||||||||||||||||||||||||||||||    
T  22592403 gaaatagaacctacacaaagtggtgggacaaacatttatttcatccaataaaagagtgagtgc 22592341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 82 - 160
Target Start/End: Complemental strand, 43771243 - 43771165
Alignment:
Q  82 ttgtggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagt 160  Q
    |||||| ||||||||||  |||| |||| |||||| | | | | |||||| ||| ||||||||||||||||||||||||    
T  43771243 ttgtgggtctacactttgaaaattgaacccacacagagtggtgggacatacattgatttcatccaataaaagagtgagt 43771165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 164
Target Start/End: Complemental strand, 46287529 - 46287476
Alignment:
Q  111 cacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgcta 164  Q
    |||||||| |||  ||||||||||| |||||||||||||||| ||| |||||||    
T  46287529 cacacaaagtagtaagacatatattaatttcatccaataaaatagtaagtgcta 46287476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 89 - 161
Target Start/End: Original strand, 24938485 - 24938557
Alignment:
Q  89 tctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtg 161  Q
    ||||||||||| |||| |||  || ||||||| | | |||||| ||| ||| |||||||||||||||||||||    
T  24938485 tctacactttaaaaattgaatccaaacaaaatggtgggacatacattgattacatccaataaaagagtgagtg 24938557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 131 - 175
Target Start/End: Complemental strand, 40812105 - 40812061
Alignment:
Q  131 atatttatttcatccaataaaagagtgagtgctacatagagtgtt 175  Q
    ||||| |||||| ||||||||||||||||||||| | ||||||||    
T  40812105 atattgatttcacccaataaaagagtgagtgctagagagagtgtt 40812061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 89 - 161
Target Start/End: Original strand, 50481615 - 50481687
Alignment:
Q  89 tctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtg 161  Q
    ||||||||||  ||||||||  || ||||| | | ||||||||  || |||||||||||||||||||||||||    
T  50481615 tctacactttgaaaatagaaaccatacaaagtggtgagacatactttgatttcatccaataaaagagtgagtg 50481687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 86 - 174
Target Start/End: Complemental strand, 15523323 - 15523235
Alignment:
Q  86 ggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgt 174  Q
    |||||||||||||||||||||||||| || ||| | | | |||||| ||| |||||||||||||||| ||||||||||| | |||||||    
T  15523323 ggatctacactttagaaatagaactcgcataaagtggtgggacatacattgatttcatccaataaaatagtgagtgctaaagagagtgt 15523235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 86 - 174
Target Start/End: Complemental strand, 15531317 - 15531229
Alignment:
Q  86 ggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgt 174  Q
    |||||||||||||||||||||||||| || ||| | | | |||||| ||| |||||||||||||||| ||||||||||| | |||||||    
T  15531317 ggatctacactttagaaatagaactcgcataaagtggtgggacatacattgatttcatccaataaaatagtgagtgctaaagagagtgt 15531229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 86 - 174
Target Start/End: Complemental strand, 22540481 - 22540393
Alignment:
Q  86 ggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgt 174  Q
    ||||||||||||| |||||||||||| || ||| | | | |||||| ||| |||||||||||||||| ||||||||||| | |||||||    
T  22540481 ggatctacactttggaaatagaactcgcataaagtggtgggacatacattgatttcatccaataaaatagtgagtgctaaagagagtgt 22540393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 82 - 176
Target Start/End: Original strand, 32211847 - 32211941
Alignment:
Q  82 ttgtggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgttg 176  Q
    |||||| ||||||| ||| |||| ||||||||||||| |||   |||||| ||| |||||||| ||||||||||||||||||  | |||||||||    
T  32211847 ttgtgggtctacaccttaaaaattgaactcacacaaagtagttggacatacattgatttcatctaataaaagagtgagtgctggagagagtgttg 32211941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 158
Target Start/End: Complemental strand, 29418594 - 29418522
Alignment:
Q  86 ggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtga 158  Q
    ||||||||||||| ||||||||||||||| ||| | | |||| ||| ||| |||| |||||||||||||||||    
T  29418594 ggatctacactttggaaatagaactcacataaagtggtgagatatacattaattttatccaataaaagagtga 29418522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 87 - 174
Target Start/End: Original strand, 19101669 - 19101756
Alignment:
Q  87 gatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgt 174  Q
    ||||||||||||  ||||||||||| || ||| | | | |||||| ||| |||||||||||||||| ||||||||||| | |||||||    
T  19101669 gatctacactttgaaaatagaactcgcataaagtggtgggacatacattgatttcatccaataaaatagtgagtgctaaagagagtgt 19101756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 82 - 177
Target Start/End: Complemental strand, 49730981 - 49730886
Alignment:
Q  82 ttgtggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgttga 177  Q
    |||||| ||||||||||  |||| |||| |||||||| ||| | ||||||||||  ||| ||| |||||||||||||||| || | ||||||||||    
T  49730981 ttgtgggtctacactttgaaaattgaacccacacaaagtagtgtgacatatattagtttaatctaataaaagagtgagtgttatagagagtgttga 49730886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 175
Target Start/End: Complemental strand, 15928653 - 15928579
Alignment:
Q  101 aaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgtt 175  Q
    |||||||||||||||||||| | |||||||| ||  ||| |||| |||||||||||| |||||| | ||||||||    
T  15928653 aaatagaactcacacaaaatggtgagacatacatgaattccatcaaataaaagagtgggtgctagagagagtgtt 15928579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 177
Target Start/End: Original strand, 28218112 - 28218206
Alignment:
Q  83 tgtggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgttga 177  Q
    ||||| ||||||||||  |||| |||  |||||||| | | |||||||| ||| |||||||||||||||||||||| ||||| | |||| |||||    
T  28218112 tgtggttctacactttgaaaattgaatccacacaaagtggtgagacatacattgatttcatccaataaaagagtgaatgctaaagagagggttga 28218206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 158
Target Start/End: Complemental strand, 5848154 - 5848086
Alignment:
Q  90 ctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtga 158  Q
    |||||||||| |||| |||| |||| ||||||| |||||||| ||| |||||| || ||||||||||||    
T  5848154 ctacactttaaaaatggaacccacataaaatagtgagacatacattaatttcaccccataaaagagtga 5848086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 6133706 - 6133782
Alignment:
Q  101 aaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgttga 177  Q
    |||| |||| ||||||| || | | |||||||||| ||||||||||||||||| |||||||||| | ||| ||||||    
T  6133706 aaattgaacccacacaatatggtgggacatatattgatttcatccaataaaagggtgagtgctagagagattgttga 6133782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 26980344 - 26980420
Alignment:
Q  101 aaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgttga 177  Q
    |||| ||||||||||||||| | | |||||| ||| |||||||||||||| |||||||||  || | ||||||||||    
T  26980344 aaattgaactcacacaaaatggtgggacatacattgatttcatccaataatagagtgagtattagagagagtgttga 26980420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 39039473 - 39039513
Alignment:
Q  137 atttcatccaataaaagagtgagtgctacatagagtgttga 177  Q
    |||||||||||||||||||||||||||| | ||||||||||    
T  39039473 atttcatccaataaaagagtgagtgctaaaaagagtgttga 39039513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 83 - 163
Target Start/End: Complemental strand, 41958199 - 41958119
Alignment:
Q  83 tgtggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgct 163  Q
    ||||| ||||||||||  |||| |||| | |||||||| | | |||||| ||| ||||||||||||||| |||||||||||    
T  41958199 tgtgggtctacactttgaaaattgaacccccacaaaatggtgggacatacattgatttcatccaataaatgagtgagtgct 41958119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 173
Target Start/End: Complemental strand, 11430550 - 11430467
Alignment:
Q  90 ctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtg 173  Q
    ||||||||| ||||| |||| |||| ||| | | | |||||| ||| |||||| ||||||||||||||||||||| | ||||||    
T  11430550 ctacactttggaaatggaacccacataaagtggtgggacatacattgatttcacccaataaaagagtgagtgctagaaagagtg 11430467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 8741305 - 8741362
Alignment:
Q  101 aaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtga 158  Q
    |||| |||| |||||||| ||| |||||||| ||| |||||||||||||||| |||||    
T  8741305 aaattgaacccacacaaattagtgagacatacattgatttcatccaataaaaaagtga 8741362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 175
Target Start/End: Complemental strand, 44739227 - 44739142
Alignment:
Q  90 ctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgtt 175  Q
    ||||||||| |||||| |||||||| ||| | | | |||||| ||| ||||||  ||| |||||||||||||||| | ||||||||    
T  44739227 ctacactttggaaatacaactcacataaagtggtgggacatacattaatttcactcaagaaaagagtgagtgctagagagagtgtt 44739142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 87 - 174
Target Start/End: Original strand, 27592520 - 27592607
Alignment:
Q  87 gatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgt 174  Q
    |||||||||||| |||||||||||| || ||| | | |||||||| ||| |||||||||||||||| ||||||||||| | |||||||    
T  27592520 gatctacactttggaaatagaactcgcataaagtggtgagacatacattgatttcatccaataaaatagtgagtgctaaagagagtgt 27592607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 86 - 174
Target Start/End: Original strand, 30325941 - 30326029
Alignment:
Q  86 ggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgt 174  Q
    ||||||||||||| || ||||||||| || ||| | | |||||||| ||| |||||||||||||||| ||||||||||| | |||||||    
T  30325941 ggatctacactttggagatagaactcgcataaagtggtgagacatacattgatttcatccaataaaatagtgagtgctaaagagagtgt 30326029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 83 - 153
Target Start/End: Original strand, 17434913 - 17434983
Alignment:
Q  83 tgtggatctacactttagaaatagaactcacacaaaatag-agagacatatatttatttcatccaataaaag 153  Q
    ||||| |||||||||||||||||||||||| ||||||||| ||| |||||||||| ||| ||||||||||||    
T  17434913 tgtgggtctacactttagaaatagaactcatacaaaatagtaga-acatatatttgtttaatccaataaaag 17434983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 82 - 161
Target Start/End: Complemental strand, 43405510 - 43405431
Alignment:
Q  82 ttgtggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtg 161  Q
    |||||| |||||||||| ||||||||||  | ||||| | | |||||||| ||| ||||||| |||||||||||||||||    
T  43405510 ttgtgggtctacactttggaaatagaacatatacaaagtggtgagacatacattgatttcattcaataaaagagtgagtg 43405431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 179 - 299
Target Start/End: Complemental strand, 9624628 - 9624508
Alignment:
Q  179 caatgttacattagcagctcaatttgcg-atatccatatttatgtagaaggctgttttaattaccaataaatggtatcaagagccaaagttaaactaaga 277  Q
    ||||||||||||| |||||||||||    |||||||||||||| | ||||| | |||||||| | || |||||||||||||||||   ||| ||||||||    
T  9624628 caatgttacattaacagctcaattttattatatccatatttatcttgaaggttattttaattgctaacaaatggtatcaagagcc-gggttgaactaaga 9624530  T
Q  278 tgcaagccatttcaagcacatg 299  Q
    ||   || ||||||||||||||    
T  9624529 tggctgcaatttcaagcacatg 9624508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 34384773 - 34384833
Alignment:
Q  101 aaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtg 161  Q
    |||| ||||||||||||||||| | |||||| ||| |||||| ||||||||||| ||||||    
T  34384773 aaattgaactcacacaaaatagtgggacatacattgatttcacccaataaaagaatgagtg 34384833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 160
Target Start/End: Original strand, 5413807 - 5413878
Alignment:
Q  89 tctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagt 160  Q
    ||||||||||  |||| |||| |||||||| | | | |||||| ||| ||||||||||||||||||||||||    
T  5413807 tctacactttgtaaattgaacccacacaaagtggtgggacatacattgatttcatccaataaaagagtgagt 5413878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 262
Target Start/End: Complemental strand, 9620193 - 9620138
Alignment:
Q  207 atatccatatttatgtagaaggctgttttaattaccaataaatggtatcaagagcc 262  Q
    ||||| |||||||| ||||||| ||| |||||| ||| ||||||||||||||||||    
T  9620193 atatctatatttatctagaaggttgtattaattgccagtaaatggtatcaagagcc 9620138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 161
Target Start/End: Original strand, 25564018 - 25564088
Alignment:
Q  91 tacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtg 161  Q
    ||||| ||||| ||||||| |||||||| | | |  ||||| ||||||||||||||||||||| |||||||    
T  25564018 tacacattagatatagaacccacacaaagtggtggaacatacatttatttcatccaataaaagggtgagtg 25564088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 177
Target Start/End: Original strand, 10142046 - 10142132
Alignment:
Q  89 tctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgttga 177  Q
    ||||||||||  |||| ||||  ||||||| | | | |||||| ||| |||| ||||||||||||||||||||||  ||||||||||||    
T  10142046 tctacactttgaaaatggaaccaacacaaagtggtgggacatacattgattttatccaataaaagagtgagtgct--atagagtgttga 10142132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 161
Target Start/End: Original strand, 10253163 - 10253224
Alignment:
Q  100 gaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtg 161  Q
    ||||||||||||||| ||| | | | |||||| ||| ||||||||||||| |||||||||||    
T  10253163 gaaatagaactcacataaagtggtgggacatacattaatttcatccaatagaagagtgagtg 10253224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 147
Target Start/End: Original strand, 34480014 - 34480079
Alignment:
Q  82 ttgtggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaa 147  Q
    |||||| ||| ||||||| |||| ||| ||||||||||| | |||| ||||||| |||||||||||    
T  34480014 ttgtgggtctgcactttaaaaattgaattcacacaaaatggtgagatatatattgatttcatccaa 34480079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 32050382 - 32050330
Alignment:
Q  124 gagacatatatttatttcatccaataaaagagtgagtgctacatagagtgttg 176  Q
    |||||||||||| |||||| ||||||||||| ||| ||||| | |||||||||    
T  32050382 gagacatatattaatttcacccaataaaagaatgaatgctagagagagtgttg 32050330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 177
Target Start/End: Complemental strand, 7775107 - 7775022
Alignment:
Q  92 acactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgttga 177  Q
    |||||||  |||| ||||||||||||| | | | |||||| ||| |||||||||||||||||||||||||||| | ||||||||||    
T  7775107 acactttgaaaattgaactcacacaaagtggtgggacatacattgatttcatccaataaaagagtgagtgctatagagagtgttga 7775022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 90 - 164
Target Start/End: Original strand, 26703511 - 26703585
Alignment:
Q  90 ctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgcta 164  Q
    ||||||||||||||| |||| |||| ||| | | |||||||| ||| |||||| |||||||||||||||||||||    
T  26703511 ctacactttagaaatggaacccacataaagtggtgagacatacattgatttcacccaataaaagagtgagtgcta 26703585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 33008221 - 33008139
Alignment:
Q  82 ttgtggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgcta 164  Q
    |||||| ||||||| || |||||||||| |||||||| | | | |||||| | | ||||||||||||||||||||||||||||    
T  33008221 ttgtgggtctacacattggaaatagaacccacacaaagtggtgggacatacaatgatttcatccaataaaagagtgagtgcta 33008139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 177
Target Start/End: Complemental strand, 22190049 - 22189961
Alignment:
Q  89 tctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgttga 177  Q
    ||||||||||  |||| |||| |||||||| | | | | |||| ||| |||||||||||||||||||||||||||| | ||||||||||    
T  22190049 tctacactttgaaaattgaacccacacaaagtggtgggccatacattgatttcatccaataaaagagtgagtgctagagagagtgttga 22189961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 177
Target Start/End: Original strand, 44510998 - 44511094
Alignment:
Q  81 cttgtggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgttga 177  Q
    ||||||||||||||| ||  |||| |||| || ||||| |   |||||||| ||| |||||||||||||||| ||||||||||| | ||||||||||    
T  44510998 cttgtggatctacacattgaaaattgaacacagacaaagtgatgagacatacattgatttcatccaataaaaaagtgagtgctagagagagtgttga 44511094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 112 - 177
Target Start/End: Complemental strand, 11824158 - 11824093
Alignment:
Q  112 acacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgttga 177  Q
    ||||||||| | | |||||| ||| |||||||||||||||||||||||||||| | |||| |||||    
T  11824158 acacaaaatggtgggacatacattgatttcatccaataaaagagtgagtgctagagagagcgttga 11824093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 90 - 175
Target Start/End: Original strand, 32212940 - 32213025
Alignment:
Q  90 ctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgtt 175  Q
    ||||| |||| |||| |||| || ||||| ||| |||||||| ||| ||||||||||||||||||  |||||||| | ||||||||    
T  32212940 ctacattttaaaaattgaacacatacaaagtagtgagacatacattgatttcatccaataaaagatagagtgctagagagagtgtt 32213025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 161
Target Start/End: Original strand, 31502534 - 31502606
Alignment:
Q  89 tctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtg 161  Q
    ||||||||||  |||| |||| |||||||||| | | ||||||  || |||||||||||||||||||||||||    
T  31502534 tctacactttgaaaattgaacgcacacaaaatggtgggacataccttgatttcatccaataaaagagtgagtg 31502606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 17354598 - 17354669
Alignment:
Q  90 ctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtg 161  Q
    ||||||||| |||||||||| |||| ||| | | | |||||| ||| |||||||||||||||||| ||||||    
T  17354598 ctacactttggaaatagaacccacataaagtggtgggacatacattgatttcatccaataaaagaatgagtg 17354669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 43235163 - 43235112
Alignment:
Q  28 aagtgtctcttttatttgtaattttatggtcaaaattgactaacgaaaaata 79  Q
    |||||| |||||||||| ||||||||||| | ||||||| ||||||||||||    
T  43235163 aagtgtttcttttatttataattttatggactaaattgattaacgaaaaata 43235112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 32205181 - 32205115
Alignment:
Q  94 actttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagt 160  Q
    |||||| |||| |||| |||||||||| |   |||||| ||| ||||||||||||||||||||||||    
T  32205181 actttaaaaattgaacccacacaaaatggtaggacatacattgatttcatccaataaaagagtgagt 32205115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 175
Target Start/End: Complemental strand, 27949390 - 27949297
Alignment:
Q  82 ttgtggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgtt 175  Q
    |||||| ||||||||||  || | ||||||||||||||| |   ||||||  || ||||||||||||| ||||||||||| || | ||||||||    
T  27949390 ttgtgggtctacactttgaaatttgaactcacacaaaatggtaggacataacttgatttcatccaatacaagagtgagtgttagagagagtgtt 27949297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 17749767 - 17749719
Alignment:
Q  126 gacatatatttatttcatccaataaaagagtgagtgctacatagagtgt 174  Q
    |||||||||| |||| |||||||||||||||||||| || | |||||||    
T  17749767 gacatatattgattttatccaataaaagagtgagtgttagagagagtgt 17749719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 24539230 - 24539278
Alignment:
Q  126 gacatatatttatttcatccaataaaagagtgagtgctacatagagtgt 174  Q
    |||||||||| |||| |||||||||||||||||||| || | |||||||    
T  24539230 gacatatattgattttatccaataaaagagtgagtgttagagagagtgt 24539278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 26703503 - 26703463
Alignment:
Q  133 atttatttcatccaataaaagagtgagtgctacatagagtg 173  Q
    |||||||||| ||||||||||||||||||||| | ||||||    
T  26703503 atttatttcacccaataaaagagtgagtgctagagagagtg 26703463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 28713114 - 28713054
Alignment:
Q  101 aaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtg 161  Q
    ||||| |||||| ||||| | | |||||||||||| ||||||| |||||||||||| ||||    
T  28713114 aaataaaactcatacaaagtggtgagacatatattgatttcattcaataaaagagtaagtg 28713054  T

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Target: scaffold0018 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 27929 - 27847
Alignment:
Q  82 ttgtggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgcta 164  Q
    |||||| |||||||||| |||||||||| |||||||| | | | |||||| ||| ||| ||||||||||||| ||||||||||    
T  27929 ttgtgggtctacactttggaaatagaacccacacaaagtggtgggacatacattgattccatccaataaaagcgtgagtgcta 27847  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 85 - 175
Target Start/End: Complemental strand, 11539539 - 11539447
Alignment:
Q  85 tggatctacactttagaaatagaactcacacaaaatagagagacata--tatttatttcatccaataaaagagtgagtgctacatagagtgtt 175  Q
    ||||||||||||||  |||||||||||||||||| |   |  |||||  |||| |||||||||||||||||||||||||||| | ||||||||    
T  11539539 tggatctacactttgaaaatagaactcacacaaagtgatggaacatacatattgatttcatccaataaaagagtgagtgctagaaagagtgtt 11539447  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 126 - 177
Target Start/End: Complemental strand, 45554640 - 45554589
Alignment:
Q  126 gacatatatttatttcatccaataaaagagtgagtgctacatagagtgttga 177  Q
    |||||| ||| |||||||||||||||||||||||||||| | ||||||||||    
T  45554640 gacatacattgatttcatccaataaaagagtgagtgctagagagagtgttga 45554589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 164
Target Start/End: Complemental strand, 4877390 - 4877317
Alignment:
Q  91 tacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgcta 164  Q
    |||||||||||||||||||||||||||| |   |||||||  ||  ||| |||| |||||||||||||||||||    
T  4877390 tacactttagaaatagaactcacacaaagtgatgagacatgcatgaattccatcaaataaaagagtgagtgcta 4877317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 86 - 175
Target Start/End: Complemental strand, 15509027 - 15508938
Alignment:
Q  86 ggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgtt 175  Q
    ||||||||||||| ||||| |||| |||| ||||| | | |||||| ||| ||||||  ||||||||||||||||| || | ||||||||    
T  15509027 ggatctacactttggaaatggaacccacaaaaaatggtgggacatacattgatttcactcaataaaagagtgagtgttagaaagagtgtt 15508938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 6980238 - 6980278
Alignment:
Q  137 atttcatccaataaaagagtgagtgctacatagagtgttga 177  Q
    |||||||||||||||||||||||||||| | ||||||||||    
T  6980238 atttcatccaataaaagagtgagtgctagagagagtgttga 6980278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 161
Target Start/End: Complemental strand, 9470198 - 9470119
Alignment:
Q  82 ttgtggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtg 161  Q
    |||||| ||||||||||  |||| |||| || ||||| | | | |||||| ||| |||||||||||||||||||||||||    
T  9470198 ttgtgggtctacactttgaaaattgaacccaaacaaagtggtgggacatacattgatttcatccaataaaagagtgagtg 9470119  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 173
Target Start/End: Original strand, 28898104 - 28898191
Alignment:
Q  86 ggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtg 173  Q
    ||||||||||||| |||||  ||| |||| ||| | | | |||||| ||| |||||| ||||||||||||||||||||| | ||||||    
T  28898104 ggatctacactttggaaatgaaacccacataaagtggtgggacatacattgatttcacccaataaaagagtgagtgctagagagagtg 28898191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 173
Target Start/End: Complemental strand, 42182998 - 42182915
Alignment:
Q  90 ctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtg 173  Q
    ||||||||| ||||| |||| |||| ||| | | | |||||| ||| |||||| ||||||||||||||||||||| | ||||||    
T  42182998 ctacactttggaaatggaacccacataaagtggtgggacatacattgatttcacccaataaaagagtgagtgctagagagagtg 42182915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 160
Target Start/End: Original strand, 4602975 - 4603008
Alignment:
Q  127 acatatatttatttcatccaataaaagagtgagt 160  Q
    ||||||||| ||||||||||||||||||||||||    
T  4602975 acatatattgatttcatccaataaaagagtgagt 4603008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 162
Target Start/End: Original strand, 32856201 - 32856278
Alignment:
Q  85 tggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgc 162  Q
    ||||||||||||||  ||||  ||| |||||||| | | || ||||||||| ||||||||| |||||||||| |||||    
T  32856201 tggatctacactttgaaaattcaacccacacaaagtggtgaaacatatattaatttcatccgataaaagagtcagtgc 32856278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 158
Target Start/End: Original strand, 34142209 - 34142278
Alignment:
Q  89 tctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtga 158  Q
    ||||||||||  |||| |||| |||||||| ||| |||||||| ||  |||||||||||||||| |||||    
T  34142209 tctacactttgaaaattgaacccacacaaagtagtgagacatacatgaatttcatccaataaaaaagtga 34142278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 42579762 - 42579799
Alignment:
Q  124 gagacatatatttatttcatccaataaaagagtgagtg 161  Q
    |||| ||||||| |||||||||||||||||||||||||    
T  42579762 gagatatatattgatttcatccaataaaagagtgagtg 42579799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 18511291 - 18511351
Alignment:
Q  101 aaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtg 161  Q
    |||| |||| |||| ||||||| | |||||| ||| |||| ||||||||||||||||||||    
T  18511291 aaattgaacccacataaaatagtgggacatacattgattttatccaataaaagagtgagtg 18511351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 175
Target Start/End: Original strand, 25730511 - 25730595
Alignment:
Q  91 tacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgtt 175  Q
    ||||| ||| ||||||||| |||| || || | |||||||| || |||| |||||||||||| |||||||| || | ||||||||    
T  25730511 tacacgttaaaaatagaacccacataatatggtgagacatacatgtattccatccaataaaaaagtgagtgttagaaagagtgtt 25730595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 37719896 - 37719860
Alignment:
Q  137 atttcatccaataaaagagtgagtgctacatagagtg 173  Q
    |||||||||||||||||||||||||||| | ||||||    
T  37719896 atttcatccaataaaagagtgagtgctagaaagagtg 37719860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 334
Target Start/End: Original strand, 40879047 - 40879149
Alignment:
Q  230 tgttttaattaccaataaatggtatcaagagccaaagttaaactaagatgcaagccatttcaagcacatgtgtaacctaaacttcagtaagtcgaatcaa 329  Q
    ||||||||||  ||| ||||||||||||||||| | ||| ||||||||||  | | | |||||||||| | ||||||  |||||||| ||||| ||||||    
T  40879047 tgttttaattgtcaaaaaatggtatcaagagcc-aggttgaactaagatggcaacaaattcaagcacaggagtaacc-caacttcagcaagtctaatcaa 40879144  T
Q  330 caatt 334  Q
    |||||    
T  40879145 caatt 40879149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 174
Target Start/End: Complemental strand, 21987405 - 21987317
Alignment:
Q  86 ggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgt 174  Q
    ||||||||||||| |||||||||||| || ||| | | | || ||| ||| |||||||||||||||| ||||||||||| | |||||||    
T  21987405 ggatctacactttggaaatagaactcgcataaagtggtgggatatacattgatttcatccaataaaatagtgagtgctaaagagagtgt 21987317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 82 - 161
Target Start/End: Complemental strand, 32122912 - 32122833
Alignment:
Q  82 ttgtggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtg 161  Q
    |||||| ||||||||||  |||| |||||| |||||||| | | |||||||||| |||||||||||||||  ||||||||    
T  32122912 ttgtgggtctacactttgaaaattgaactcccacaaaatggtgggacatatattgatttcatccaataaataagtgagtg 32122833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 82 - 177
Target Start/End: Complemental strand, 34905453 - 34905358
Alignment:
Q  82 ttgtggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgttga 177  Q
    |||||| ||||||||||  |||| |||| || ||||| | | | |||||| ||| ||||||||||||||||||||||||| || | ||||||||||    
T  34905453 ttgtgggtctacactttgaaaattgaacccaaacaaagtggtgggacatacattgatttcatccaataaaagagtgagtgttagagagagtgttga 34905358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 90 - 163
Target Start/End: Original strand, 6531369 - 6531442
Alignment:
Q  90 ctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgct 163  Q
    ||||||||  ||||| ||||||||| ||| ||| | |||||| ||| |||||| ||||||||||||||||||||    
T  6531369 ctacacttcggaaatggaactcacataaagtagtgggacatacattgatttcacccaataaaagagtgagtgct 6531442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 82 - 175
Target Start/End: Original strand, 31116187 - 31116280
Alignment:
Q  82 ttgtggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgtt 175  Q
    |||||| | ||||| || |||||||||| |||||||| ||| | |||||| ||| ||||||||||||| |||||||| || || | ||||||||    
T  31116187 ttgtgggtttacacattggaaatagaacacacacaaagtagtgggacatacattgatttcatccaatagaagagtgaatgttagagagagtgtt 31116280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 32599011 - 32599086
Alignment:
Q  82 ttgtggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtg 157  Q
    ||||| ||||||||||| ||||||| || |||||||| | | | |||||| || |||| |||||||||||||||||    
T  32599011 ttgtgaatctacactttggaaatagcacccacacaaagtggcgggacatacatgtattccatccaataaaagagtg 32599086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 82 - 152
Target Start/End: Original strand, 32112780 - 32112850
Alignment:
Q  82 ttgtggatctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaa 152  Q
    |||||||||||||||||  ||||| ||| |||||||||| | | |||||  ||| ||||||||||||||||    
T  32112780 ttgtggatctacactttgaaaataaaacccacacaaaatggtgtgacatgcattgatttcatccaataaaa 32112850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 445916 - 445840
Alignment:
Q  101 aaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgttga 177  Q
    |||| |||| |||||||| | | | |||||| ||| |||||||||||||||| ||||||||||| | | ||||||||    
T  445916 aaattgaacccacacaaagtggtgtgacatacattgatttcatccaataaaaaagtgagtgctagagatagtgttga 445840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 176
Target Start/End: Original strand, 12327286 - 12327362
Alignment:
Q  100 gaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgttg 176  Q
    |||||||||| |||||||||| |   |||||| ||| |||  ||||||||||||||||| ||||| | |||||||||    
T  12327286 gaaatagaacccacacaaaatggtaggacatacattgattctatccaataaaagagtgactgctagagagagtgttg 12327362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0543 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 176
Target Start/End: Complemental strand, 9774 - 9687
Alignment:
Q  89 tctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgttg 176  Q
    ||||||||||  |||| |||| |||||||||| | | || ||| ||| |||||||||||||||| |||||||| || | |||||||||    
T  9774 tctacacttttaaaattgaacccacacaaaatggtgggatatacattgatttcatccaataaaaaagtgagtgttagagagagtgttg 9687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0492 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 176
Target Start/End: Complemental strand, 11320 - 11233
Alignment:
Q  89 tctacactttagaaatagaactcacacaaaatagagagacatatatttatttcatccaataaaagagtgagtgctacatagagtgttg 176  Q
    ||||||||||  |||| |||| |||||||||| | | || ||| ||| |||||||||||||||| |||||||| || | |||||||||    
T  11320 tctacacttttaaaattgaacccacacaaaatggtgggatatacattgatttcatccaataaaaaagtgagtgttagagagagtgttg 11233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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