View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5397-Insertion-5 (Length: 480)

Name: NF5397-Insertion-5
Description: NF5397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5397-Insertion-5
NF5397-Insertion-5
[»] chr1 (5 HSPs)
chr1 (8-480)||(30696733-30697206)
chr1 (122-286)||(30687860-30688023)
chr1 (8-117)||(30687720-30687822)
chr1 (400-480)||(46191456-46191535)
chr1 (394-477)||(4130313-4130396)
[»] chr6 (10 HSPs)
chr6 (384-480)||(26976126-26976223)
chr6 (394-480)||(1234926-1235013)
chr6 (394-480)||(27878714-27878801)
chr6 (394-480)||(18968102-18968189)
chr6 (400-477)||(30986741-30986818)
chr6 (394-480)||(27873995-27874082)
chr6 (394-436)||(30967678-30967720)
chr6 (392-480)||(21966775-21966862)
chr6 (408-478)||(23012520-23012591)
chr6 (438-480)||(30966878-30966920)
[»] chr8 (2 HSPs)
chr8 (394-480)||(9439377-9439464)
chr8 (394-480)||(9444097-9444184)
[»] chr7 (5 HSPs)
chr7 (394-480)||(16183636-16183723)
chr7 (391-480)||(8139966-8140055)
chr7 (385-480)||(30235248-30235343)
chr7 (391-480)||(8138462-8138551)
chr7 (391-480)||(36528417-36528506)
[»] chr5 (5 HSPs)
chr5 (394-480)||(41718635-41718722)
chr5 (394-480)||(41723361-41723448)
chr5 (394-480)||(34360181-34360268)
chr5 (400-480)||(29585311-29585392)
chr5 (408-480)||(34352473-34352546)
[»] chr4 (10 HSPs)
chr4 (394-480)||(48701826-48701913)
chr4 (400-480)||(42266128-42266209)
chr4 (400-480)||(42270847-42270928)
chr4 (394-480)||(48697136-48697223)
chr4 (395-480)||(24520031-24520117)
chr4 (400-480)||(30945488-30945569)
chr4 (394-480)||(30950188-30950275)
chr4 (394-480)||(10427505-10427592)
chr4 (402-477)||(48782956-48783031)
chr4 (391-473)||(30165895-30165977)
[»] chr3 (7 HSPs)
chr3 (394-480)||(5823280-5823367)
chr3 (394-480)||(54546109-54546195)
chr3 (394-480)||(2817268-2817355)
chr3 (394-480)||(5818518-5818605)
chr3 (400-480)||(4579276-4579357)
chr3 (394-480)||(24659141-24659228)
chr3 (403-480)||(31204781-31204857)
[»] chr2 (7 HSPs)
chr2 (394-479)||(825705-825791)
chr2 (400-480)||(5198666-5198747)
chr2 (394-480)||(830360-830447)
chr2 (391-480)||(28715986-28716075)
chr2 (400-480)||(15603102-15603183)
chr2 (391-460)||(30396913-30396982)
chr2 (402-477)||(31592923-31592999)
[»] scaffold0074 (1 HSPs)
scaffold0074 (394-480)||(27231-27318)


Alignment Details
Target: chr1 (Bit Score: 430; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 8 - 480
Target Start/End: Original strand, 30696733 - 30697206
Alignment:
Q  8 gtttgtgatatgtatggtttcatcaggcaacatgttagatttctactgccactatcatagaaagtagaaactgatgtaaaattgattatcacttttatat 107  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30696733 gtttgtgatatgtatagtttcatcaggcaacatgttagatttctactgccactatcatagaaagtagaaactgatgtaaaattgattatcacttttatat 30696832  T
Q  108 atagatgcatagcttgtgcaatgaatgtcaattaaactgtgtatgtgaaggtgtaacagataacataaagaattaatggattccagtagaaatcatcttt 207  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  30696833 gtagatgcatagcttgtgcaatgaatgtcaattaaactgtgtatgtgaaggtgtaacagataacatgaagaattaatggattccagtagaaatcatcttt 30696932  T
Q  208 tctttcttttgattagtagtattagatattttatcagtgtgaatcaaagaaaaaatataaagttaggcaaactagcatctgtttacttcatgaaacca-t 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |    
T  30696933 tctttcttttgattagtagtattagatattttatcagtgtgaatcaaagaaaaaatataaagttaggcaaactagcatctgtttactttatgaaaccatt 30697032  T
Q  307 ttctatcgaagggagattattgaagtgaacgttatgatggaaagaatatgaaatcctagctaaggatgatacatacatttaattttgggtactagagtaa 406  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30697033 ttctatcgaagggagactattgaagtgaacgttatgatggaaagaatgtgaaatcctagctaaggatgatacatacatttaattttgggtactagagtaa 30697132  T
Q  407 caaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaatatttacgtggaaaccc 480  Q
    |||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  30697133 caaaatattatcacgcagctaacataagagacgagaaaagaggaacttaacacaaaatatttacgtggaaaccc 30697206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 122 - 286
Target Start/End: Original strand, 30687860 - 30688023
Alignment:
Q  122 tgtgcaatgaatgtcaattaaactgtgtatgtgaaggtgtaacagataacataaagaattaatggattccagtagaaatcatcttttctttcttttgatt 221  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||| | |||    
T  30687860 tgtgcaatgaatgtcaattaaattgtgtatgtgaaggtgtaacagataacatgaagaattaatggattccaatagaaatcatctattctttcttgttatt 30687959  T
Q  222 agtagtattagatattttatcagtgtgaatcaaagaaaaaatataaagttaggcaaactagcatc 286  Q
     |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  30687960 cgtagtattagatattttatctgtgtgaatcaaag-aaaaatataaagttaggcaaactagcatc 30688023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 30687720 - 30687822
Alignment:
Q  8 gtttgtgatatgtatggtttcatcaggcaacatgttagatttctactgccactatcatagaaagtagaaactgatgtaaaattgattatcacttttatat 107  Q
    ||||||||||||||| |||||||||||||||||||||||| |||| |||||||||        |||||||||||||||||||||||||||||||||||||    
T  30687720 gtttgtgatatgtatagtttcatcaggcaacatgttagatatctattgccactatg-------gtagaaactgatgtaaaattgattatcacttttatat 30687812  T
Q  108 atagatgcat 117  Q
    ||||||||||    
T  30687813 atagatgcat 30687822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 400 - 480
Target Start/End: Complemental strand, 46191535 - 46191456
Alignment:
Q  400 agagtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaatatttacgtggaaaccc 480  Q
    |||||||||||||||||||| |||||||||||||||| |||| ||||||||||| ||||||| || |||||||||||||||    
T  46191535 agagtaacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaacacaatat-tttacgtggaaaccc 46191456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 394 - 477
Target Start/End: Complemental strand, 4130396 - 4130313
Alignment:
Q  394 ggtactagagtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaatatttacgtggaaa 477  Q
    |||||| ||||||||||||||||||||||| |||||||||| | |||| ||||||||||| |||||| || |||||||||||||    
T  4130396 ggtacttgagtaacaaaatattatcacgcaactaaaataagtgacgagaaaagaggaactgaacacacaaaatttacgtggaaa 4130313  T

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Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 384 - 480
Target Start/End: Original strand, 26976126 - 26976223
Alignment:
Q  384 tttaattttgggtactagagtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaata-tttacgtggaaaccc 480  Q
    |||||| || ||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||| |||| |||||||||||||||    
T  26976126 tttaatgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaaccc 26976223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 394 - 480
Target Start/End: Complemental strand, 1235013 - 1234926
Alignment:
Q  394 ggtactagagtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaata-tttacgtggaaaccc 480  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||| |||| |||||||||||||||    
T  1235013 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaaccc 1234926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 394 - 480
Target Start/End: Original strand, 27878714 - 27878801
Alignment:
Q  394 ggtactagagtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaata-tttacgtggaaaccc 480  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||| |||| |||||||||||||||    
T  27878714 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaaccc 27878801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 394 - 480
Target Start/End: Complemental strand, 18968189 - 18968102
Alignment:
Q  394 ggtactagagtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaata-tttacgtggaaaccc 480  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||| || ||| |||| |||||||||||||||    
T  18968189 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaatacataatattttacgtggaaaccc 18968102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 400 - 477
Target Start/End: Complemental strand, 30986818 - 30986741
Alignment:
Q  400 agagtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaatatttacgtggaaa 477  Q
    |||||||||||||||||||||| |||||||||||||| |||| ||||||||||| ||| || ||||||||||||||||    
T  30986818 agagtaacaaaatattatcacgtagctaaaataagagacgagaaaagaggaactgaacgcacaatatttacgtggaaa 30986741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 394 - 480
Target Start/End: Original strand, 27873995 - 27874082
Alignment:
Q  394 ggtactagagtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaata-tttacgtggaaaccc 480  Q
    ||||| |||||||||||||||||||||||| ||||||||||||  ||| ||||||||||| |||||| |||| |||||||||||||||    
T  27873995 ggtaccagagtaacaaaatattatcacgcatctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaaccc 27874082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 436
Target Start/End: Complemental strand, 30967720 - 30967678
Alignment:
Q  394 ggtactagagtaacaaaatattatcacgcagctaaaataagag 436  Q
    ||||| |||||||||||||||||||| ||||||||||||||||    
T  30967720 ggtaccagagtaacaaaatattatcaagcagctaaaataagag 30967678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 480
Target Start/End: Complemental strand, 21966862 - 21966775
Alignment:
Q  392 tgggtactagagtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaatatttacgtggaaaccc 480  Q
    ||||||| | |||||| ||| ||||||||||||||||| ||| |   ||| ||||||||||| |||| |||||||||| ||||||||||    
T  21966862 tgggtaccaaagtaacgaaacattatcacgcagctaaa-taacatatgagaaaagaggaactaaacataaaatatttatgtggaaaccc 21966775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 478
Target Start/End: Original strand, 23012520 - 23012591
Alignment:
Q  408 aaaatattatcacgcagctaaaataagaggcgag-gaaagaggaacttaacacaaaatatttacgtggaaac 478  Q
    |||||||||||||||| |||||||||||| ||||  ||||| ||| | |||||| | |||||||||||||||    
T  23012520 aaaatattatcacgcaactaaaataagagacgagaaaaagaagaattgaacacacattatttacgtggaaac 23012591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 438 - 480
Target Start/End: Complemental strand, 30966920 - 30966878
Alignment:
Q  438 cgaggaaagaggaacttaacacaaaatatttacgtggaaaccc 480  Q
    |||| ||||||||||| |||||| |||||||||||||||||||    
T  30966920 cgagaaaagaggaactgaacacacaatatttacgtggaaaccc 30966878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 394 - 480
Target Start/End: Original strand, 9439377 - 9439464
Alignment:
Q  394 ggtactagagtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaata-tttacgtggaaaccc 480  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||| |||| |||||||||||||||    
T  9439377 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaaccc 9439464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 394 - 480
Target Start/End: Original strand, 9444097 - 9444184
Alignment:
Q  394 ggtactagagtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaata-tttacgtggaaaccc 480  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||| |||| |||||||||||||||    
T  9444097 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaaccc 9444184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 394 - 480
Target Start/End: Original strand, 16183636 - 16183723
Alignment:
Q  394 ggtactagagtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaata-tttacgtggaaaccc 480  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||| |||| |||||||||||||||    
T  16183636 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaaccc 16183723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 391 - 480
Target Start/End: Original strand, 8139966 - 8140055
Alignment:
Q  391 ttgggtactagagtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaatatttacgtggaaaccc 480  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||  ||| |||||| |||| ||| || |||||||| ||||||||||    
T  8139966 ttgggtaccagagtaacaaaatattatcacacagctaaaataagagatgagaaaagagaaactgaacgcacaatatttatgtggaaaccc 8140055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 385 - 480
Target Start/End: Complemental strand, 30235343 - 30235248
Alignment:
Q  385 ttaattttgggtactagagtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaatatttacgtggaaaccc 480  Q
    ||||| |||||||| |||||| ||||||||||| || |||||||||||| |   ||| ||||||||||| |||||| |||||||||||||||||||    
T  30235343 ttaatgttgggtaccagagtagcaaaatattattacacagctaaaataaaaaatgagaaaagaggaactgaacacacaatatttacgtggaaaccc 30235248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 391 - 480
Target Start/End: Original strand, 8138462 - 8138551
Alignment:
Q  391 ttgggtactagagtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaatatttacgtggaaaccc 480  Q
    |||||||  |||||| |||| ||||||||||||||||||||||||| |||| |||||  ||||||||||| | || ||| ||||||||||    
T  8138462 ttgggtagcagagtatcaaagtattatcacgcagctaaaataagagacgagaaaagaaaaacttaacacacagtaattatgtggaaaccc 8138551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 391 - 480
Target Start/End: Original strand, 36528417 - 36528506
Alignment:
Q  391 ttgggtactagagtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaatatttacgtggaaaccc 480  Q
    |||||||  ||||||||||| ||  || ||||| ||||||||||||  ||| | ||||||| | |||||| |||||||||||||||||||    
T  36528417 ttgggtatcagagtaacaaagtaaaattacgcaactaaaataagagatgagaatagaggaattgaacacacaatatttacgtggaaaccc 36528506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 394 - 480
Target Start/End: Complemental strand, 41718722 - 41718635
Alignment:
Q  394 ggtactagagtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaata-tttacgtggaaaccc 480  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||| |||| |||||||||||||||    
T  41718722 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaaccc 41718635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 394 - 480
Target Start/End: Complemental strand, 41723448 - 41723361
Alignment:
Q  394 ggtactagagtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaata-tttacgtggaaaccc 480  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||| |||| |||||||||||||||    
T  41723448 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaaccc 41723361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 394 - 480
Target Start/End: Complemental strand, 34360268 - 34360181
Alignment:
Q  394 ggtactagagtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaata-tttacgtggaaaccc 480  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||| |||| ||||||| |||||||    
T  34360268 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtagaaaccc 34360181  T

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Target: chr5; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 400 - 480
Target Start/End: Original strand, 29585311 - 29585392
Alignment:
Q  400 agagtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaata-tttacgtggaaaccc 480  Q
    |||||||||||||||||||| |||||||||||||||| |||| ||||||||||| |||||| |||| |||||||||||||||    
T  29585311 agagtaacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaaccc 29585392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 408 - 480
Target Start/End: Complemental strand, 34352546 - 34352473
Alignment:
Q  408 aaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaata-tttacgtggaaaccc 480  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||| |||||| |||| |||||||||||||||    
T  34352546 aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaaccc 34352473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 394 - 480
Target Start/End: Original strand, 48701826 - 48701913
Alignment:
Q  394 ggtactagagtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaata-tttacgtggaaaccc 480  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||| |||| |||||||||||||||    
T  48701826 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaaccc 48701913  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 400 - 480
Target Start/End: Complemental strand, 42266209 - 42266128
Alignment:
Q  400 agagtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaata-tttacgtggaaaccc 480  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||| |||| |||||||||||||||    
T  42266209 agagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaaccc 42266128  T

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Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 400 - 480
Target Start/End: Complemental strand, 42270928 - 42270847
Alignment:
Q  400 agagtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaata-tttacgtggaaaccc 480  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||| |||| |||||||||||||||    
T  42270928 agagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaaccc 42270847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 394 - 480
Target Start/End: Original strand, 48697136 - 48697223
Alignment:
Q  394 ggtactagagtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaata-tttacgtggaaaccc 480  Q
    ||||| |||||||||||||||||||||||||||||||||||||  ||| ||||||||||| |||||| |||| |||||||||||||||    
T  48697136 ggtaccagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaaccc 48697223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 395 - 480
Target Start/End: Original strand, 24520031 - 24520117
Alignment:
Q  395 gtactagagtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaata-tttacgtggaaaccc 480  Q
    |||| |||||||||||||||||||||||| |||||||||||| |||| ||||||||||| |||||| |||| |||||||||||||||    
T  24520031 gtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaaccc 24520117  T

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Target: chr4; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 400 - 480
Target Start/End: Original strand, 30945488 - 30945569
Alignment:
Q  400 agagtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaata-tttacgtggaaaccc 480  Q
    |||||||||||||||||||||||||||||||||||||  ||| ||||||||||| |||||| |||| |||||||||||||||    
T  30945488 agagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaaccc 30945569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 394 - 480
Target Start/End: Original strand, 30950188 - 30950275
Alignment:
Q  394 ggtactagagtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaata-tttacgtggaaaccc 480  Q
    ||||| ||||||||||||||||||||||||||||||||||||   ||| ||||||||||| |||||| |||| |||||||||||||||    
T  30950188 ggtaccagagtaacaaaatattatcacgcagctaaaataagataagagaaaagaggaactgaacacacaatattttacgtggaaaccc 30950275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 394 - 480
Target Start/End: Complemental strand, 10427592 - 10427505
Alignment:
Q  394 ggtactagagtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaata-tttacgtggaaaccc 480  Q
    ||||| ||||||||| |||||||||||||| |||||||||||| |||| ||||||||||| |||||| |||| |||||| ||||||||    
T  10427592 ggtaccagagtaacagaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgcggaaaccc 10427505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 402 - 477
Target Start/End: Complemental strand, 48783031 - 48782956
Alignment:
Q  402 agtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaatatttacgtggaaa 477  Q
    |||| ||||||||||||||||   ||||||||||  |||| ||| ||||||| |||||| ||||||||||||||||    
T  48783031 agtatcaaaatattatcacgcgattaaaataagaaacgagaaaacaggaactgaacacacaatatttacgtggaaa 48782956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 473
Target Start/End: Complemental strand, 30165977 - 30165895
Alignment:
Q  391 ttgggtactagagtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaatatttacgtg 473  Q
    |||| |||||||||||||||||| |||||| || |||||||||||   ||| ||| | ||| | |||||| ||||||||||||    
T  30165977 ttggatactagagtaacaaaataatatcacacaactaaaataagatatgagaaaaaatgaattgaacacataatatttacgtg 30165895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 394 - 480
Target Start/End: Original strand, 5823280 - 5823367
Alignment:
Q  394 ggtactagagtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaata-tttacgtggaaaccc 480  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||| |||| |||||||||||||||    
T  5823280 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaaccc 5823367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 394 - 480
Target Start/End: Complemental strand, 54546195 - 54546109
Alignment:
Q  394 ggtactagagtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaatatttacgtggaaaccc 480  Q
    ||||| |||||||||||||||||||||||||||||||||||||  ||| ||||||||||| |||| | |||||||||||||||||||    
T  54546195 ggtaccagagtaacaaaatattatcacgcagctaaaataagagatgagaaaagaggaactgaacatacaatatttacgtggaaaccc 54546109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 394 - 480
Target Start/End: Original strand, 2817268 - 2817355
Alignment:
Q  394 ggtactagagtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaata-tttacgtggaaaccc 480  Q
    ||||| |||||||||||||||||||||||||||||||||||||  ||| ||||||||||| |||||| |||| |||||||||||||||    
T  2817268 ggtaccagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaaccc 2817355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 394 - 480
Target Start/End: Original strand, 5818518 - 5818605
Alignment:
Q  394 ggtactagagtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaata-tttacgtggaaaccc 480  Q
    ||||| |||||||||||||||||||||||| |||||||||||| |||| ||||||||||| |||||| |||| |||||||||||||||    
T  5818518 ggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaaccc 5818605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 400 - 480
Target Start/End: Complemental strand, 4579357 - 4579276
Alignment:
Q  400 agagtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaata-tttacgtggaaaccc 480  Q
    |||||||||||||||||||||||| |||||||||||| |||| ||||||||||| |||||| |||| |||||||||||||||    
T  4579357 agagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaaccc 4579276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 394 - 480
Target Start/End: Original strand, 24659141 - 24659228
Alignment:
Q  394 ggtactagagtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaata-tttacgtggaaaccc 480  Q
    ||||| ||||||| ||||||||||||| |||||||||||||||  ||| ||||||||||| |||||| || | |||||||||||||||    
T  24659141 ggtaccagagtaataaaatattatcacacagctaaaataagagatgagaaaagaggaactgaacacacaacattttacgtggaaaccc 24659228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 403 - 480
Target Start/End: Original strand, 31204781 - 31204857
Alignment:
Q  403 gtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaatatttacgtggaaaccc 480  Q
    |||||||||||||| ||||||| ||||| |||||  ||  ||||||||||| ||| || |||||||||||||||||||    
T  31204781 gtaacaaaatattagcacgcagttaaaagaagagatgaa-aaagaggaactgaactcacaatatttacgtggaaaccc 31204857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 8e-25; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 394 - 479
Target Start/End: Complemental strand, 825791 - 825705
Alignment:
Q  394 ggtactagagtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaata-tttacgtggaaacc 479  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||| |||| ||||||||||||||    
T  825791 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacc 825705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 400 - 480
Target Start/End: Original strand, 5198666 - 5198747
Alignment:
Q  400 agagtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaata-tttacgtggaaaccc 480  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||| |||| |||||||||||||||    
T  5198666 agagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaaccc 5198747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 394 - 480
Target Start/End: Complemental strand, 830447 - 830360
Alignment:
Q  394 ggtactagagtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaata-tttacgtggaaaccc 480  Q
    ||||| ||||||||||||||||||||||||| ||||||||||| |||| ||||||||||| |||||| |||| |||||||||||||||    
T  830447 ggtaccagagtaacaaaatattatcacgcagttaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaaccc 830360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 391 - 480
Target Start/End: Complemental strand, 28716075 - 28715986
Alignment:
Q  391 ttgggtactagagtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaatatttacgtggaaaccc 480  Q
    |||| ||| ||||||||||||||||||||| ||  ||||||||||| |||  ||||||||| | |||||| |||||||||||||||||||    
T  28716075 ttggataccagagtaacaaaatattatcacacatttaaaataagagacgacaaaagaggaattgaacacacaatatttacgtggaaaccc 28715986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 400 - 480
Target Start/End: Complemental strand, 15603183 - 15603102
Alignment:
Q  400 agagtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaata-tttacgtggaaaccc 480  Q
    ||||||| ||||||||||||||||  | ||||||||| |||| ||||||||||| |||||| |||| |||||||||||||||    
T  15603183 agagtaagaaaatattatcacgcaattgaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaaccc 15603102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 391 - 460
Target Start/End: Original strand, 30396913 - 30396982
Alignment:
Q  391 ttgggtactagagtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacaca 460  Q
    |||||| | |||||| |||||||||||||||||||||||||||||| |||| ||||| ||||| ||||||    
T  30396913 ttgggtgccagagtagcaaaatattatcacgcagctaaaataagagacgagaaaagacgaactgaacaca 30396982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 477
Target Start/End: Original strand, 31592923 - 31592999
Alignment:
Q  402 agtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaat-atttacgtggaaa 477  Q
    ||||||| ||||||||||| ||| || |||||||| |||| |||||||||| ||||| | ||| |||||||||||||    
T  31592923 agtaacataatattatcacacagatagaataagagacgagaaaagaggaacataacatacaataatttacgtggaaa 31592999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 394 - 480
Target Start/End: Original strand, 27231 - 27318
Alignment:
Q  394 ggtactagagtaacaaaatattatcacgcagctaaaataagaggcgaggaaagaggaacttaacacaaaata-tttacgtggaaaccc 480  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||| |||||| |||| |||||| |||| |||||||||||||||    
T  27231 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagagaaactgaacacacaatactttacgtggaaaccc 27318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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