View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5397-Insertion-7 (Length: 128)
Name: NF5397-Insertion-7
Description: NF5397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5397-Insertion-7 |
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| [»] scaffold0200 (1 HSPs) |
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Alignment Details
Target: scaffold0200 (Bit Score: 119; Significance: 3e-61; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 119; E-Value: 3e-61
Query Start/End: Original strand, 6 - 128
Target Start/End: Original strand, 28830 - 28952
Alignment:
| Q |
6 |
cagaaacatcatagaacacaatgtttgcatctgttctagtcaattgaacagacatgaaaccttgtccatcatagaagaaatttacaccgtttccggtagt |
105 |
Q |
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| T |
28830 |
cagaaacatcatagaacacaatgtttgcatctgttctagtcaattgaacagacatgaaaccttgtccatcatagaagaaatttacaccgtttccggtagt |
28929 |
T |
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| Q |
106 |
ttctcgaacatctcctctccatg |
128 |
Q |
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||||||||| ||||||||||||| |
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| T |
28930 |
ttctcgaacgtctcctctccatg |
28952 |
T |
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