View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5397_high_13 (Length: 236)
Name: NF5397_high_13
Description: NF5397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5397_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 15 - 220
Target Start/End: Original strand, 22166820 - 22167025
Alignment:
| Q |
15 |
agatgaacacggcatattaattaaaaacatttaatattaatttcaatttcataaatgacnnnnnnnaaaaagaaattttaaatgaattcttgtaactcct |
114 |
Q |
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| T |
22166820 |
agatgaacacgatatattaattaaaaacatttaatattaatttcaattttataaatgacttttttttaaaagaaattttaaatgacttcttgtaactcct |
22166919 |
T |
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| Q |
115 |
aaatgctaaataaaatttaattgaagctatttcagaacattaaatttttagttataaaagggatcaaacttttgtttatttataacatgcaaaggatgga |
214 |
Q |
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| T |
22166920 |
aaatgctaaataaaatttaattgaagctatttcagaacattaaatttttagttataaaagggatcaaacttttgtttatttataacatgcaaaggatgga |
22167019 |
T |
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| Q |
215 |
acatat |
220 |
Q |
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|||||| |
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| T |
22167020 |
acatat |
22167025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 36 - 219
Target Start/End: Original strand, 22185001 - 22185184
Alignment:
| Q |
36 |
taaaaacatttaatattaatttcaatttcataaatgacnnnnnnnaaaaagaaatttta--aatgaattcttgtaactcctaaatgctaaataaaattta |
133 |
Q |
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| T |
22185001 |
taaaaaaatttaatatttatttgaatttcataaatgacttttttttgaaagaaattttataaatgacttcttgtaactactaaatgctaaataaaattta |
22185100 |
T |
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| Q |
134 |
attgaagctatttcagaacattaaatttttagttataaaagggatcaaacttttgtttatttataacatgcaaaggatggaacata |
219 |
Q |
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| T |
22185101 |
gttgaagctatttaa--acattaaatttttagttataaaagggatcaagcttttgtttatttataacatgcaaaggatggaacata |
22185184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 108 - 210
Target Start/End: Original strand, 22200124 - 22200221
Alignment:
| Q |
108 |
aactcctaaatgctaaataaaatttaattgaagctatttcagaacattaaatttttagttataaaagggatcaaacttttgtttatttataacatgcaaa |
207 |
Q |
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|||||||||||| ||||||||||||||||||||||| || | |||||||||||||||||||||| ||||||||||| ||| ||||||||||||||| |
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| T |
22200124 |
aactcctaaatgttaaataaaatttaattgaagctagtt--aaccattaaatttttagttataaaatggatcaaactt---tttttttataacatgcaaa |
22200218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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