View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5397_low_1 (Length: 559)
Name: NF5397_low_1
Description: NF5397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5397_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 1 - 541
Target Start/End: Original strand, 34247862 - 34248402
Alignment:
| Q |
1 |
ctttggtttatgatcacttagtttcaatgttgcatttttgtcatcaaatgaggatggtccaatttgttctttttctttgtcaattaagccaccactatga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34247862 |
ctttggtttatgatcacttagtttcaatgttgcatttttgtcatcaaatgaggatggtccaatttgttctttttctttgtcaattaagccaccactatga |
34247961 |
T |
|
| Q |
101 |
catgaatccgagagaattgttaagcttgctccttttggaatccgatttactagttgtctgaagtccaaatctatacagtatacgacaatgatagaaataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34247962 |
catgaatccgagagaattgttaagcttgctccttttggaatccgatttactagttgtctgaagtccaaatctatacagtatacgacaatgatagaaataa |
34248061 |
T |
|
| Q |
201 |
aagtattagttttatacatagtttctaaatggcatttgggttgtcacatagttcaaatatctaagaaaattctatagttcacatagactactctgcaatt |
300 |
Q |
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| T |
34248062 |
aagtattagttttatacatagtttctaaatggcatttgggttgtcacatagttcaaatatctaagaaaattctatagttcacatagactactctgcaatt |
34248161 |
T |
|
| Q |
301 |
ttaaatgtgannnnnnnncatatgaacttgagctagtaacatcataaacaattttgtaactaaatcgcgacataagttttatcacgagagaagttgatac |
400 |
Q |
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|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34248162 |
ttaaatgtgattttttttcatatgaactcgagctagtaacatcataaacaattttgtaactaaatcgcgacataagttttatcaagagagaagttgatac |
34248261 |
T |
|
| Q |
401 |
aaaccagtgataagattgaagtcacaaggcacaatagcttcttcatgtcgaaaaggatgtccatgtatcttggaaggaatcctagttccatgtccactat |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34248262 |
aaaccagtgataagattgaagtcacaaggcacaatagcttcttcatgtcgaaaaggatgtccatgtatcttggaaggaatcctagttccatgtccactat |
34248361 |
T |
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| Q |
501 |
aatgaaaataaagcacatcccctgcttcagctttatcaacc |
541 |
Q |
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| T |
34248362 |
aatgaaaataaagcacatcccctgcttcagctttatcaacc |
34248402 |
T |
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