View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5397_low_12 (Length: 241)
Name: NF5397_low_12
Description: NF5397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5397_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 40894622 - 40894855
Alignment:
| Q |
1 |
attgttctttctgattttatttgtttcagatttaacaatgtttcatcatgattagttcaattcaattgtgtgcttgtttagaatttgaatgtgtcgtgtg |
100 |
Q |
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| T |
40894622 |
attgttctttctgattttatttgtttcagatttaacaatgtttcatcatgattagttcaattcaattgtgtgcttgtttagaatttgaatgtgtcgtgtg |
40894721 |
T |
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| Q |
101 |
attattgattcttgtaggaggaaaagacaaagaatctgaggacatttcaaccttggaggagcttagctctgatgagcagaagtggaaatcaacagatgca |
200 |
Q |
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| T |
40894722 |
attattgattcttgtaggaggaaaagacaaagaatctgaggacatttcaaccttggaggagcttagctctgatgagcagaagtggaaatcaacagatgca |
40894821 |
T |
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| Q |
201 |
aatgatgattctgaagatgattagtttgatgatg |
234 |
Q |
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| T |
40894822 |
aatgatgattctgaagatgattagtttgatgatg |
40894855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 2 - 233
Target Start/End: Complemental strand, 44153672 - 44153441
Alignment:
| Q |
2 |
ttgttctttctgattttatttgtttcagatttaacaatgtttcatcatgattagttcaattcaattgtgtgcttgtttagaatttgaatgtgtcgtgtga |
101 |
Q |
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| T |
44153672 |
ttgttttttctgatttcatttgtttcagatttaagattgtttcattatgattagttaaattcaattgagtgcttgtttagaatttgaatgtgccgcatga |
44153573 |
T |
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| Q |
102 |
ttattgattcttgtaggaggaaaagacaaagaatctgaggacatttcaaccttggaggagcttagctctgatgagcagaagtggaaatcaacagatgcaa |
201 |
Q |
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| T |
44153572 |
ttattgattcatgcaggaggaaaaggcaaagaatctgaggacatttcaaccttggaggagctgagctctgatgtgccgaagtggaaatcagcagatgcga |
44153473 |
T |
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| Q |
202 |
atgatgattctgaagatgattagtttgatgat |
233 |
Q |
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| T |
44153472 |
atgatgattctgaagacgattagtttgatgat |
44153441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 40898392 - 40898187
Alignment:
| Q |
1 |
attgttctttctgattttatttgtttcagatttaacaatgtttcatcatgattagttcaattcaattgtgtgcttgtttagaatttgaatgtgtcgtgtg |
100 |
Q |
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| T |
40898392 |
attgttctttctgatttcatttgtttcggatttaagattgtttcattttgattagttcaattcaattgtgtgcttgtttagaattttaatgt-------- |
40898301 |
T |
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| Q |
101 |
attattgattcttgtaggaggaaaagacaaagaatctgaggacatttcaaccttggaggagcttagc---tctgatgagcagaagtggaaatcaacagat |
197 |
Q |
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| T |
40898300 |
--tattgattcatgcaggaggaaaaggcaaagaatctgaggacatttcaaccttggaggagctgagctcttctgatgtgcagaagtggaaatcagcagat |
40898203 |
T |
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| Q |
198 |
gcaaatgatgattctg |
213 |
Q |
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| T |
40898202 |
gcaaatgatgattctg |
40898187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 44153997 - 44153937
Alignment:
| Q |
30 |
atttaacaatgtttcatcatgattagttcaattcaattgtgtgcttgtttagaatttgaat |
90 |
Q |
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| T |
44153997 |
atttgacaatgtttcatcatgattagttcaattcaactgtgtgcatgtctttaatttgaat |
44153937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 40898722 - 40898662
Alignment:
| Q |
30 |
atttaacaatgtttcatcatgattagttcaattcaattgtgtgcttgtttagaatttgaat |
90 |
Q |
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| T |
40898722 |
atttgacaatgtttcatcatgattagttcaattcaaccgtgtgcatgtctttaatttgaat |
40898662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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