View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5397_low_14 (Length: 233)
Name: NF5397_low_14
Description: NF5397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5397_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 85 - 221
Target Start/End: Complemental strand, 11321131 - 11320995
Alignment:
| Q |
85 |
gtgattaccgccatatcgaaatattcgatctcgaaacgaaaacgtttcagaaaataacatattcagtaaatcctgattttcatcactataatccatttgt |
184 |
Q |
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| T |
11321131 |
gtgattaccgccatatcgaaatattcgatctcgaaacgaaaacgtttcagaaaataacatattcagtaaatcctgattttcatcactataatccatttgt |
11321032 |
T |
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| Q |
185 |
ttcacctgattcttgttacattggttaccacaggttc |
221 |
Q |
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| T |
11321031 |
ttcacctgattcttgttacattggttaccaccggttc |
11320995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 85 - 221
Target Start/End: Complemental strand, 11479152 - 11479016
Alignment:
| Q |
85 |
gtgattaccgccatatcgaaatattcgatctcgaaacgaaaacgtttcagaaaataacatattcagtaaatcctgattttcatcactataatccatttgt |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11479152 |
gtgattaccgccatatcgaaatattcgatctcgaaacgaaaacgtttcagaaaataacatattcagtaaatcctgattttcatcactataatccatttgt |
11479053 |
T |
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| Q |
185 |
ttcacctgattcttgttacattggttaccacaggttc |
221 |
Q |
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| T |
11479052 |
ttcacctgattcttgttacattggttaccaccggttc |
11479016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 215
Target Start/End: Complemental strand, 11459734 - 11459604
Alignment:
| Q |
85 |
gtgattaccgccatatcgaaatattcgatctcgaaacgaaaacgtttcagaaaataacatattcagtaaatcctgattttcatcactataatccatttgt |
184 |
Q |
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|||||| ||| || ||||| || ||| ||||||| || |||| || || ||||||||| | || |||| ||| ||||||| ||||||||||||||| | |
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| T |
11459734 |
gtgatttccgtcacatcgagattttcaatctcgagacacaaacattccaaaaaataacagaaacaataaaccctaattttcaccactataatccatttat |
11459635 |
T |
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| Q |
185 |
ttcacctgattcttgttacattggttaccac |
215 |
Q |
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| T |
11459634 |
ctcccgtgattcttgttacctcggttaccac |
11459604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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