View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5397_low_3 (Length: 414)
Name: NF5397_low_3
Description: NF5397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5397_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 53843627 - 53843231
Alignment:
| Q |
1 |
gtggaagagcttatatcaaccatgaggaatgaggagaagtcaccagattttcttctatgtctaggagatgatcgttcagatgaagatatgtttgaaagca |
100 |
Q |
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| T |
53843627 |
gtggaagagcttatatcaaccatgaggaatgaggagaagtcaccagattttcttctatgtctaggagatgatcgttcagatgaagatatgtttgaaagca |
53843528 |
T |
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| Q |
101 |
ttgcaaatttagcgttaccaacctcatcacaagtgtttgcatgcactattggttataaaccaagtagggctaaatactatttggatgatactggtcatgt |
200 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
53843527 |
ttgcaaatttagccttaccaacctcatcacaagtgtttgcatgcactattggttataaaccaagtagggctaaatactatttggatgatactggtcacgt |
53843428 |
T |
|
| Q |
201 |
tatcagactgctggaaggacttgctgctgcatcagcgcaaaatttaagcacaaaatagaaagaaatatctatacagtaaaactaatgttgttgtacagaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53843427 |
tatcagactgctggaaggacttgctgctgcatcagcgcaaaatttaagcacaaaatagaaagaaatatctatacagtaaaactaatgttgttgtacagaa |
53843328 |
T |
|
| Q |
301 |
tgatagataccttcttcataggttgtttcatttgggaaggnnnnnnngtcaatcaatacttttagaattttacaaattagctagttagcttgcttat |
397 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53843327 |
tgatagatgccttcttcataggttgtttcatttgggaaggaaaaaaagtcaatcaatacttttagaattttacaaattagctagttagcttgcttat |
53843231 |
T |
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