View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5397_low_4 (Length: 409)
Name: NF5397_low_4
Description: NF5397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5397_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 19 - 400
Target Start/End: Complemental strand, 11321591 - 11321210
Alignment:
| Q |
19 |
aacgtgcttttcaaaagcgcttctgctgtttactccaccgccgtcgatgacaccggaactttaactaggctgacacctcacggtgttgttgattatagtc |
118 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11321591 |
aacgcgcttttcaaaagcgcttctgctgtttactccaccgccgtcgatggcaccggaactttaactaggctgacacctcacggtgttgttgattatagtc |
11321492 |
T |
|
| Q |
119 |
ctgctgtttctgtaaccggaaacttaatcgctgttgcttcctacggttctcgaaactgggatggcgattttcgtgaactcaaaacggatatcgttgtgtt |
218 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11321491 |
ctgctgtttctctaaccggaaacttaatcgctgttgcttcctacggttctcgaaactgggatggcgattttcgtgaactcaaaacggatatcgttgtgtt |
11321392 |
T |
|
| Q |
219 |
tgaagagtctgtgccggagaatcgtgttgtggttgctgaacgcggtggctggccgacgtggttgggagattcaacggtgttcttccacagaatcgccgat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11321391 |
tgaagagtctgtgccggagaatcgtgttgtggttgctgaacgcggtggctggccgacgtggttgggagattcaacggtgttcttccacagaatcgccgat |
11321292 |
T |
|
| Q |
319 |
gacggttggtggagcattttccgagccgatttaaaggattctaatcttaccggaattcaatcatcacctattcatctcactc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||| |
|
|
| T |
11321291 |
gacggttggtggagcattttccgagccgatttaaaggattctaatcttaccggaattcaatcctcacctattcgtatcactc |
11321210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 19 - 400
Target Start/End: Complemental strand, 11479612 - 11479231
Alignment:
| Q |
19 |
aacgtgcttttcaaaagcgcttctgctgtttactccaccgccgtcgatgacaccggaactttaactaggctgacacctcacggtgttgttgattatagtc |
118 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11479612 |
aacgcgcttttcaaaagcgcttctgctgtttactccaccgccgtcgatggcaccggaactttaactaggctgacacctcacggtgttgttgattatagtc |
11479513 |
T |
|
| Q |
119 |
ctgctgtttctgtaaccggaaacttaatcgctgttgcttcctacggttctcgaaactgggatggcgattttcgtgaactcaaaacggatatcgttgtgtt |
218 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11479512 |
ctgctgtttctctaaccggaaacttaatcgctgttgcttcctacggttctcgaaactgggatggcgattttcgtgaactcaaaacggatatcgttgtgtt |
11479413 |
T |
|
| Q |
219 |
tgaagagtctgtgccggagaatcgtgttgtggttgctgaacgcggtggctggccgacgtggttgggagattcaacggtgttcttccacagaatcgccgat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11479412 |
tgaagagtctgtgccggagaatcgtgttgtggttgctgaacgcggtggctggccgacgtggttgggagattcaacggtgttcttccacagaatcgccgat |
11479313 |
T |
|
| Q |
319 |
gacggttggtggagcattttccgagccgatttaaaggattctaatcttaccggaattcaatcatcacctattcatctcactc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||| |
|
|
| T |
11479312 |
gacggttggtggagcattttccgagccgatttaaaggattctaatcttaccggaattcaatcctcacctattcgtatcactc |
11479231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 76 - 335
Target Start/End: Complemental strand, 11460137 - 11459878
Alignment:
| Q |
76 |
actttaactaggctgacacctcacggtgttgttgattatagtcctgctgtttctgtaaccggaaacttaatcgctgttgcttcctacggttctcgaaact |
175 |
Q |
| |
|
||||| |||||||| |||||| |||||||||||||||||||||| || |||||| | ||||||| |||||||| |||||||||||||| |||| | |
|
|
| T |
11460137 |
actttcactaggcttacaccttacggtgttgttgattatagtccagccgtttctctcaccggaagtttaatcgcggttgcttcctacggaactcgtcgat |
11460038 |
T |
|
| Q |
176 |
gggatggcgattttcgtgaactcaaaacggatatcgttgtgtttgaagagtctgtgccggagaatcgtgttgtggttgctgaacgcggtggctggccgac |
275 |
Q |
| |
|
|| | ||||| || | || || ||||||| || || |||||||| || ||||| |||||||| ||||||||||| ||||||||||| |||||||| |
|
|
| T |
11460037 |
ggaacggcgaaattagagagcttgaaacggagatagtagtgtttgaggaatctgtcccggagaaccgtgttgtggtgagcgaacgcggtggttggccgac |
11459938 |
T |
|
| Q |
276 |
gtggttgggagattcaacggtgttcttccacagaatcgccgatgacggttggtggagcat |
335 |
Q |
| |
|
||||||||| |||||||| |||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
11459937 |
gtggttgggtgattcaacattgttcttccacaaaatcgccgaagacggttggtggagcat |
11459878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 236 - 391
Target Start/End: Complemental strand, 30441900 - 30441745
Alignment:
| Q |
236 |
agaatcgtgttgtggttgctgaacgcggtggctggccgacgtggttgggagattcaacggtgttcttccacagaatcgccgatgacggttggtggagcat |
335 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
30441900 |
agaatcgtgttgtggttgctgaatgcggtggctggccgacgtggttaggcaattcaacggtgttctttcacagaatcgccgatgatggttggtggagcat |
30441801 |
T |
|
| Q |
336 |
tttccgagccgatttaaaggattctaatcttaccggaattcaatcatcacctattc |
391 |
Q |
| |
|
|||||||| ||||||| ||||||| |||||||||||||||||||| ||||| |||| |
|
|
| T |
30441800 |
tttccgagtcgatttacaggattcgaatcttaccggaattcaatcctcaccaattc |
30441745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 318 - 386
Target Start/End: Original strand, 13040504 - 13040572
Alignment:
| Q |
318 |
tgacggttggtggagcattttccgagccgatttaaaggattctaatcttaccggaattcaatcatcacc |
386 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||| ||||| |
|
|
| T |
13040504 |
tgacggttggtggagcattttccgagttgatttacaggattcgaatcttaccggaattcaatcgtcacc |
13040572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 318 - 385
Target Start/End: Original strand, 13057926 - 13057993
Alignment:
| Q |
318 |
tgacggttggtggagcattttccgagccgatttaaaggattctaatcttaccggaattcaatcatcac |
385 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||| ||||||| |||||||||||||||||||| |||| |
|
|
| T |
13057926 |
tgacggttggtggagcattttctgagttgatttacaggattcgaatcttaccggaattcaatcctcac |
13057993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University